TCONS_00050468 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050468
Unique NameTCONS_00050468
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length856

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050468 ID=TCONS_00050468|Name=TCONS_00050468|organism=Clytia hemisphaerica|type=transcript|length=856bp
NTTCCAGTTGAGGTGCATGTCAATCAAAACGCCAAGATATTTGatattta
aactttgaaaaattttcttacctccaattttaagaaaaggaACAAAAGGA
AGAATTTTCGACAgtgtctgaaaattaaaaattcagtttttccagCGTTA
AGGGATATTTTATTAGCTTTGAGCCAAGTTTGGAGGGATCTTAGGTCACG
ATTGACTCTGTTGCAAAGGGAAAGAAGATcatgtcagatagtcccaagtt
agagcagttgacagtagtTCCTGTCTCTAAAAAAGGTCATTCATTTGCAT
GAGGGctatgatgcaagttaccctacTTCAGGATAATCAATAGCCAGACA
TCgcaattgaaccaatcgaacataatcgaacgtgatcgaataattgcaat
tcgattgtcaaacgaaATCTAATcgaatcgaatctcaatcgaacagccGT
GTTTGATTGcattcgagtaaggttagattggttcggtTGATTGTCAATTA
CCTTCGATTTTgtttgattacgattatgttcgatgagtttgattgcgatt
taAATTGAATTGGATCACTCCCGCGTTAGATTTTTTCAGCGTGGGCTGCT
GAGCGCTTAAAGTACCATACGAAAGGGAATAAAACCTACtacaatcgaat
caatcgaatgtaatcgaacataatcgaatacaattgaACGTAATCTAAGC
AATTGTACGGctaattctgggtaatattcgattgcaattcgattgtgtTC
GCCAATCGAATTGCAAACGTATTCGATTGTGttaaattgaattcaattga
ttcggcgtttgATTCGTTCAATTAACACCGTCTGGCAATAGCTAATTGTA
ATTGAG
Run BLAST on NCBI

transcript from alignment at scaffold_172:61295..62150

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050468 ID=TCONS_00050468|Name=TCONS_00050468|organism=Clytia hemisphaerica|type=transcript|length=856bp|location=Sequence derived from alignment at scaffold_172:61295..62150 (Clytia hemisphaerica)
CTCAATTACAATTAGCTATTGCCAGACGGTGTTAATTGAACGAATcaaac
gccgaatcaattgaattcaatttaaCACAATCGAATACGTTTGCAATTCG
ATTGGCGAacacaatcgaattgcaatcgaatattacccagaattagCCGT
ACAATTGCTTAGATTACGTtcaattgtattcgattatgttcgattacatt
cgattgattcgattgtaGTAGGTTTTATTCCCTTTCGTATGGTACTTTAA
GCGCTCAGCAGCCCACGCTGAAAAAATCTAACGCGGGAGTGATCCAATTC
AATTtaaatcgcaatcaaactcatcgaacataatcgtaatcaaacAAAAT
CGAAGGTAATTGACAATCAaccgaaccaatctaaccttactcgaatgCAA
TCAAACACggctgttcgattgagattcgattcgATTAGATttcgtttgac
aatcgaattgcaattattcgatcacgttcgattatgttcgattggttcaa
ttgcGATGTCTGGCTATTGATTATCCTGAAgtagggtaacttgcatcata
gCCCTCATGCAAATGAATGACCTTTTTTAGAGACAGGAactactgtcaac
tgctctaacttgggactatctgacatgATCTTCTTTCCCTTTGCAACAGA
GTCAATCGTGACCTAAGATCCCTCCAAACTTGGCTCAAAGCTAATAAAAT
ATCCCTTAACGctggaaaaactgaatttttaattttcagacacTGTCGAA
AATTCTTCCTTTTGTtccttttcttaaaattggaggtaagaaaatttttc
aaagtttaaatatCAAATATCTTGGCGTTTTGATTGACATGCACCTCAAC
TGGAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031960XLOC_031960Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050468-exon-scaffold_172-1491911889:61295..62150TCONS_00050468-exon-scaffold_172-1491911889:61295..62150Clytia hemisphaericaexon
TCONS_00050468-exon-scaffold_172-1510915933:61295..62150TCONS_00050468-exon-scaffold_172-1510915933:61295..62150Clytia hemisphaericaexon
TCONS_00050468-exon-scaffold_172-1575043694:61295..62150TCONS_00050468-exon-scaffold_172-1575043694:61295..62150Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_172supercontigscaffold_172:61295..62150 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12206	0.779376	1.96866	2.05089	1.21493	1.34928	1.39471	1.3294	1.09607	0.881628	1.38886	0.882317	0.998287	0.955568	1.0044	1.04009	0.914107	0.797419	0.613182	1.52799	1.21954	0.808632	0.131957	0.474991	1.19969	0.812344	1.16745	0.774572	0.839842	0.557423
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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