TCONS_00050470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050470
Unique NameTCONS_00050470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050470 ID=TCONS_00050470|Name=TCONS_00050470|organism=Clytia hemisphaerica|type=transcript|length=310bp
CCAAAAAAACGAAAGAAGTCTGGAAGCTTATTCACCGAATCCTCCACCCA
aagaaaagtgttatcaatATTCAACCCTCCGAATTAAACGATCACTACAT
TTCAACAGCTCCTAGAATCCTTGGATCACAGCCAACTTCAATCGAAGAAA
TCCAGCTCCTTCTTCAAGATCTTGCTACAAATGAATTCGAATTCCAACCC
GTCACATATGAACAAGTAGTCAAAGAAATCAAGAACCTTCGAACTGACTG
CTCTTCTGGATACGACAATCTTCCAGTTTCACTCATCAAACCTATTGCTG
ATCATCTCGT
Run BLAST on NCBI

protein sequence of TCONS_00050470-protein

>TCONS_00050470-protein ID=TCONS_00050470-protein|Name=TCONS_00050470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
KKTKEVWKLIHRILHPKKSVINIQPSELNDHYISTAPRILGSQPTSIEEI
QLLLQDLATNEFEFQPVTYEQVVKEIKNLRTDCSSGYDNLPVSLIKPIAD
HL
Run BLAST on NCBI

transcript from alignment at scaffold_172:70674..70983

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050470 ID=TCONS_00050470|Name=TCONS_00050470|organism=Clytia hemisphaerica|type=transcript|length=310bp|location=Sequence derived from alignment at scaffold_172:70674..70983 (Clytia hemisphaerica)
ACGAGATGATCAGCAATAGGTTTGATGAGTGAAACTGGAAGATTGTCGTA
TCCAGAAGAGCAGTCAGTTCGAAGGTTCTTGATTTCTTTGACTACTTGTT
CATATGTGACGGGTTGGAATTCGAATTCATTTGTAGCAAGATCTTGAAGA
AGGAGCTGGATTTCTTCGATTGAAGTTGGCTGTGATCCAAGGATTCTAGG
AGCTGTTGAAATGTAGTGATCGTTTAATTCGGAGGGTTGAATattgataa
cacttttcttTGGGTGGAGGATTCGGTGAATAAGCTTCCAGACTTCTTTC
GTTTTTTTGG

Coding sequence (CDS) from alignment at scaffold_172:70674..70983

>TCONS_00050470 ID=TCONS_00050470|Name=TCONS_00050470|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_172:70674..70983 (Clytia hemisphaerica)
GAGATGATCAGCAATAGGTTTGATGAGTGAAACTGGAAGATTGTCGTATC
CAGAAGAGCAGTCAGTTCGAAGGTTCTTGATTTCTTTGACTACTTGTTCA
TATGTGACGGGTTGGAATTCGAATTCATTTGTAGCAAGATCTTGAAGAAG
GAGCTGGATTTCTTCGATTGAAGTTGGCTGTGATCCAAGGATTCTAGGAG
CTGTTGAAATGTAGTGATCGTTTAATTCGGAGGGTTGAATattgataaca
cttttcttTGGGTGGAGGATTCGGTGAATAAGCTTCCAGACTTCTTTCGT
TTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031962XLOC_031962Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050470-proteinTCONS_00050470-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050470-exon-scaffold_172-1491911889:70674..70983TCONS_00050470-exon-scaffold_172-1491911889:70674..70983Clytia hemisphaericaexon
TCONS_00050470-exon-scaffold_172-1510915933:70674..70983TCONS_00050470-exon-scaffold_172-1510915933:70674..70983Clytia hemisphaericaexon
TCONS_00050470-exon-scaffold_172-1575043694:70674..70983TCONS_00050470-exon-scaffold_172-1575043694:70674..70983Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_172supercontigscaffold_172:70674..70983 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.10668	2.39673	4.2677	4.97029	1.42049	1.12249	2.25705	0.422605	0.591752	0.73298	0.355724	1.87071	2.10163	1.69755	1.79436	1.06979	2.89937	2.7016	3.35916	1.17171	1.3579	0.496753	0.805158	1.3197	5.27764	2.69152	0	0.513811	1.16912	1.5882
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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