TCONS_00050471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050471
Unique NameTCONS_00050471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3747

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050471 ID=TCONS_00050471|Name=TCONS_00050471|organism=Clytia hemisphaerica|type=transcript|length=3747bp
cttttagagtttattattgaaaaaaaaaattattgtagATCAATAACACA
TTACAAGTATTGGATGTGCATCaaGTTTAACAAGAGCTTCAGCACCTGCT
GATCTCACAGCTCCTTTAACTTCACCATCGCCACAACAAAAACAACCACA
AGAAGAAAACGAACAGCAACCACCTGTATCTAAAAGCTTCAGACAATTAC
CAAGTACATCAAAACCCAATAGTAACAGCTCAAAATTTATTCAAGACAAT
TCTACTACACTTGAAGATATTAACCAATTTGGAAGTGAATTTGTTTTaca
tatttcaacaccaaaGAAGCTTTTTACTCCACCACCAAAAGACGAATTCA
GTATGGTAAAAGATAAAGAATATGAGAAATGGCTAAAAGGCTTTCTAAAT
CAATGTCAAACAGACTTTAAAGCAAAATGGGAAATCCCAGCAAAGAATAC
TGCAAGTTTAGAGGAATTTGATCGGTTAAAAACACTGGGGACAGGGTCTT
TTGGGCGTGTCATGTTATGTTGTCACAGGGAATCGAAAAAATATTATGCA
ATGAAGATTTTGGATAAACAAAAGGTTGTGAGGCTGAAACAAGTTGAACA
CACACTAAACGAAAAACGTATTTTACAAGCTGTTGATTTTCCCTTTCTAG
TAAACCTTGACTTTCATTTCAAGGATAATTCAAATTTATACATGGTGTTA
GAATTTGTCCCTGGAGGAGAAATGTTCTCTCACTTGCGTCGTATCGGTAG
ATTCagTGAACCACATTCAAGGTTTTATGCTGCTCAAATCGTACTGGCGT
TCGAATATTTACATCATTTAGATCTAATATATAGGGATTTAAAACCAGAA
AATTTATTAATCGACCAGCAAGGATATATCAAGATTACAGATTTTGGGTT
CGCAAAAAAAGTCAAAGGAAGAACTTGGACGTTGTGCGGAACACCAGAAT
ATCTAGCTCCTGAAATTATTCTTAGCAAGGGTTATAATAAAGCAGTCGAT
TGGTGGGCGTTGGGTGTTCTCATTTACGAAATGGCTGCTGGTTACCCACC
ATTCTTTGCAGACCAACCTATTCAAATCTACGAAAAAATTGTCTCAGGAA
AGATGCGATGTCCATCACATTTCAGTCACGATTTAAAAGACTTATTAAAA
GCGCTACTGCAGGTCGATCTAACCAAACGGTATGGTAACCTGAAGAATGG
TGTTGCAGATATCAAAAATTGTAAATGGTTCTCTTCAACTAATTGGCTAC
ATATTTATAATCGAAAGCTCGAAGCACCATTTATTCCACCGTGCCGTGGC
CCCGGAGATCCAAGTAATTTTGACGATTACGAAGAAGAAGCATTGCGTAT
TTCTAATAATGAAAAATGTGTACGAGAGTTTGCTGATTTTTAAAATAGAA
GACACCAATGATTATACTCGACCCGTGGTGTTCTAGTGTAGATTTGATTG
ACCAATGGAAGTTCCTTCCCCACACTTCGTAACACGTAACTAATCACACA
CCACAATAATCTATAGAGACAGTCTCGCCNTGTAACACGTAACTAATCAC
ACACGACAATAATCTATAGAGACAGTCTCACCATGTCTGAATCGATGAGA
ATCGATGGTTTGTGGACTTATCGATAATCGATGGAGGAAATACCCAGACG
AATGGTATCTCAACATTGATTTATCAAATTGGGCGTTGCAGATCTTTTTG
ATGGGCGTTGTTTTGGGCGTTATGATTTCGTCGTAAGATTCAATGGACGA
TTTtagagaaatttgaaaatgatttttgaaataagTTATTTGACCTGACG
GAAGGGATGTGAGTTTGTTTGAAGGGAATGGTTTTTGAATAGTTTTGTTA
TTACAGTCAgctctctcttattcgaacctctataatttgattttttctgt
aattcgaactaaaatattggtcccctcagtgGAAAAGTGgtgtaaaatac
tctctataattcgaatctttctctaaatcgaaaaaaagagaagatcgaat
tagaggaaGGGAACTGTAATTGTTTCTTTAGATTATTAGAACATNGAAGA
TCGAATTGGAGGAAGGGAACTGTAATTGTTTCTTTAGATTATTAGAACAT
TGCTGTTAAAAGGAAATCAAATTGGTTACGAATTTTAAAAACCTTGATTG
AAAGCACTTGCTTTAGGAAATCTAATGGTactgaaaatcagaaaattacc
TTCTATCAGAGCCTCTAAATAAGTCACTTTACCGTGGTCCCAAGAGGGAA
tagaattttcatcaaataagggaacgtgtcgaatagtagagcatCGTTTC
ATTTATGAGAGTTTATTGTTGACGCTAACTTTCAGTATTTACTGGAGCAC
ATCGAATAAAGGATGGACGTCTAATTAGAGATTGTCAACTGTATATTCAC
TGGGGATCTCTTTTGTTTCGATGcaaatcattgagtttcaagcccgaagg
gctagaggcgaaactttaagctttctcggGCAAGAGAAactgaagctact
tatttcccatccaaaacgcgcatagaacgcggttcctttgttttggagga
ctacttttttggaaatctagcgatagattttagtttcgattcggcgtttg
tgtaaaaactacgcgtgggtgttctggatgggaaattagcttcatttccc
atccaggagtctcgcctctagcccttcgggtttgaaactcaatggtgcAA
ATCTCTTTAGCCTCAATTTATCATATTATATAGTTTTTAATAGTTAGTAG
ATGAGAGTATTTTTAGCTTGCTAATTTTCCGCCGTGGGATTTCATACGTA
GTGTGTTCAATTGAAtttaagaaccagtaaattttagCTGAGctgttctt
aatcttttgaaatttttaggcttaaatgttcttacgatattcttagggtt
taaaatctgttaaagcCATTACTTTCTTAGTAGTAtcgaaatctgaggct
cagaatgttctttatttgttcttaggttttggccttAGGTTTCAAGCAAA
GAGAGCTTTATAAGGCCTAGAATTCAGAAAGCTAAAAGGATCACGGCATG
TTTTAGCACCCAAAGTATGTTTTTTATacataatttaatttttgtgtgtt
tttgtGAGCATAACAATTAATGAACTTTTCTGTACGATAattactttttt
gattttcaaccaAAAGACTCTTGAAAAGGATTTGAAAGTTAATCAACGCA
AAATTCAGCTAGATATTTTACTCTATaactaattttaccagttttggGGG
TTTAAACCCGTATTGCTAATATTTTAACATTGTAGGTTCATATCAAGGTA
TCTCTAGTTTTGTATTtcgtgcaaaaaaaaattattttcagtgtattaaa
attaaatgaaaatcaaatgtttgtattgaaaaatTAATTGCGTTTGGCAT
GAAATAATAtggcaaatatattttttatcgtGACTTTCTGTTAAACCAGT
CATAGCGCCAATAAGCGCCTTTACTTTGAAAGGTTAACgtgaaatagaaa
aataatattttgtataCAAAATTCtaatattctaaaaaaaaattataatt
tttgcgACTTTTTAGATTGATCTTTTGTCTgtttttttgttggttttttt
atttttaatatttttgtttttgaaaaattgtataGGTCATATTTTGTTGC
TGTCCAAAATTATAAAACATTATTGTATCATCGTATCACgtccacttttg
aaaaatatgtataATCTTGTagtagaaaagaaaaattgtaatttaat
Run BLAST on NCBI

transcript from alignment at scaffold_173:6307..17199+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050471 ID=TCONS_00050471|Name=TCONS_00050471|organism=Clytia hemisphaerica|type=transcript|length=10893bp|location=Sequence derived from alignment at scaffold_173:6307..17199+ (Clytia hemisphaerica)
cttttagagtttattattgaaaaaaaaaattattgtagATCAATAACACA
TTACAAGTATTGGATGTGCATCGTAAGTGTATAAACATAAACtaataata
caaatttatttcttCAGAATATTTTGATTCCAATCTGATGATTGCATTTT
GTCTGAagtcaaatctttgtttacaatttttggaaattattaTGTGAATA
GAACATTGCCCACAATTTGTACTTATTTAACCCGATTTTATTTCTTATGT
TACCCTTGTTCCTGATCCCCTGTTTGTTAGGCATATAAGATTACTGTTCG
TTTCTGCTGACtggctttcttttttttcacattaCTTACAATTTCAACCT
GACATTTTGACCTATGATTTTTCATCATAACCATTTCTTTTTTGTGTTgc
tttttttgccaaaaccttCGAAAAAGTCTTATAGATTTGGTTGTCATGAA
TATCAGTCTTTCTAAGGTAAAAAATCAATGCACAATgcaaacaaagaaac
aaaaagagagaaaacatgaaaaacaacgTACCAGAGTGGCCAGAAGTGAC
AGCTGGAAGCTGACCAAGATGGCTGAAAGCATTGTGCCTTGCCTTGAATG
AACTTTAGATTAGCCTAGGTTAGAGCCAGTCTGGAAAGGTTAGCCTAGGT
TAGAGACATGTTTGACATGCATCTACTGATTTGCTGAcctatcatttgat
tttttagaaGTTTAACAAGAGCTTCAGCACCTGCTGATCTCACAGCTCCT
TTAACTTCACCATCACCACAACAAAAACAACCACAAGAAGAAAANCAAGC
ATCTACTGATTTGCTGActtatcatttgattttttagaaGTTTAACAAGA
GCTTCAGCACCTGCTGATCTCACAGCTCCTTTAACTTCACCATCGCCACA
ACAAAAACAACCACAAGAAGAAAACGAACAGCAACCACCTGTATCTAAAA
GCTTCAGACAATTACCAAGTACATCAAAACCCAATAGTAACAGCTCAAAA
TTTATTCAAGACAATTCTACTACACTTGAAGATATTAACCAATTTGGAAG
TGAATTTGTTTTacatatttcaacaccaaaGAAGCTTTTTACTCCACCAC
CAAAAGACGAATTCAGTATGGTAAAAGATAAAGAATATGAGAAATGGCGT
AAGCtggttttcaaataaaaacttacatatATTTCTTCAAATTTGCCAAT
GAGTGACAGAATTTAATCAATTATTTGCATACTCTATcttttaaaacaag
aaaaaaccCTTATTTTGTCCTATCACTCCAACAATGCACACAATTATGAT
ATGATTATTCATAGTTAATTCTACTATAAAATTTAGTTCGGCTCTTTCAT
AATGTCCATGAAAATAATGCTCCTACTTACCTTTATGTATGCATGAGTAT
GCAAAACCTGGATAGTCAAAGCCTAGCATAACCTATATAACTTTATCATA
AAACTCGGACATTTTTATTGGAGCAAAATTCTATGGATGCTTCAAcatat
ttttacgtttttggaggatctgatttgaaaataaattcctTTTGTTTTTC
AGTAAAAGGCTTTCTAAATCAATGTCAAACAGACTTTAAAGCAAAATGGG
AAATCCCAGCAAAGGTTTGTTTACtagattctatgtttggtgattgGATT
ATAAGCAGCCTACCAGACCATAGGTTGGCACTTATTTATGTTGTATTTAT
TGAGGTCATGCTGCAAAAAAAAACTATGTTGAAGACCTCTTAGTTACTTA
GGCTTCTGATCTGGGTTCCCTTCAGGGGTTCCAGAGAAGACACCATTAAT
AAGTTGTTAGAAATCGTGATCATGACTTTCTCAGCATTTTCTTGTCTGAA
AGCATTGTACAATTTGTAGGCTAGAAAGTCTTTCTAAGGTTGCACTGAAG
AAGGTTAACTGGTAATCAAAACTCAAACttcgttcttcttttttaaCAGA
ATACTGCAAGTTTAGAGGAATTTGATCGGTTAAAAACACTGGGGACAGGG
TCTTTTGGGCGTGTCATGTTATGTTGTCACAGGGAATCGAAAAAATATTA
TGCAATGAAGATTTTGGATAAACAAAAGGTAAGATGCAAGATCCAAATTG
CATTTTTTATGGTTTACAAAATAACTACCAGGACGTCTAAAAAAATCAGG
GGCTCCAGGTTTTAATTCCAAACGCCTCCATGctctgttcaatcaataga
caACCAAGTCGCCTGGCTGTGGACttataaaaattatcaaaataatgtca
aaaaaatttttccatgTAAAATATTGACATTTGCCTAGGCTAGAATGTTT
CCTTTCAAATCAGTTATTTCTGAACTAAATTTATTtctctttattttgtt
ttttagatAGTTCTTCTATGGTTTTCATTTTGAACATGATACGCTCCTAA
AAATATACTgcgaaaataattcttttttatgGCACACAAAACCAATTAAT
TCTGATTGATTTGCAACTTTGCTaggttttgattttcttgattAATTTTC
AAGAACAAGCCAAGTggattttaagtcaaaaaaacTTCAGGCTTATTGTA
CTATTTCTCTTAATTTCAGGTTGTGAGGCTGAAACAAGTTGAACACACAC
TAAACGAAAAACGTATTTTACAAGCTGTTGATTTTCCCTTTCTAGTAAAC
CTTGACTTTCATTTCAAGGTGAGTAACACAGTCAACTGTCTCTGACTCGA
ACCTCTATGATTTGAAcccttctgtaattcgaactaaaatattagtCCTT
TCAGCTGGAAAAGTAGTGTAAAATACTCCCTATAATCCGAattattttct
aattcgaacttttctttaattcgaacctctatgaTTCAAACCTTTCTGTA
AATCGAGCTGAAATATTGGTCCCTTCAGCTGAAAAGTAGTGTAAAATACT
CCCTATAATCCGAattattttctaattcgaacttttctttaattcaaacc
tctatgattcgaatctttctgtaattcgagctGAAATATTGGTCCCTTCA
GCTGAAAAGTAGTGTAAAATACTCCCTATTATTCGAATCCTTCTCATATT
CGAAGAAAAGTCTTTATTCCGCCAAATTTTAAACCCCCTATTATTAAAAG
CAATGAGATATTTTATGAAAGTGAAATGATTTCCAAATGTTTAAACTGGA
ACTTTAGATTGAATCTCAACCCAATGCTCTTTTCTAATATATGTCTGGTG
AAATCTTAATTTGATTCTTGGTctgttaaaatctttgaaaatctagaatc
tcaaaatttaaaatgttcttgaataTAGACCATTTTACGGGTGAAAGAAA
TTATAGGTAATCAGAATCACCACACTATTATAATGACAACTGTAGGGCCA
ACATTTTCCATGTTTTTCTAACCAGCAGGAAGCTGATATGGGGGCGTGAT
CAGTTCTGCTTACCCATGATTGATTTCGACATTGAAATGGCTTATGTAAC
AAAAATATAGAGGGTTTTTCAGGActaatttaatatttttcacaTAAATC
TTCTTATCTTTTTCTTGTATCGACCTTAATCACTTACATTTACTTTACAT
TCGTTATATTTTTCAGGATAATTCAAATTTATACATGGTGTTAGAATTTG
TCCCTGGAGGAGAAATGTTCTCTCACTTGCGTCGTATCGGTAGATTCagg
taagaacatttttttgtttaaaatttaaatttaaattaaaaaatgaccCC
GTATAAATCAGTTTTATTTATGGGAGCTATCCCCCTTCTCTTCGTCTTAC
TTCTTGTTAGGATATTCTAAGTTCTGCTTTCACAGCGAGGTTCAAATTTA
AGCCAAATTGAAGAATCGGAACTAGATTGTGGAAAATATTTCCATGACAC
AAAAAATTCAGTAgtcaaattaaaacttttttgtgtCAAACGAGAAATAA
TGACGTTAAACAAGAATATCTTGAACAAACCCTTATTATTAGCCCTTTTT
ATAATAATACTCAACCTAACATTGTATATGTTATTGTTTATTGTTCAATT
TCTTGattgaacaaaaaatgttttcaattattttatcTTACTTTTTAGTG
AACCACATTCAAGGTTTTATGCTGCTCAAATCGTACTGGCGTTCGAATAT
TTACATCATTTAGATCTAATATATAGGTAATGCCTAGAGTTTATTTCATC
GTCATATTGGAGTCATACAGATAGTATAATTGGCGCTCTCTAGTTCGACA
TAGAACTATTCGATATGCTTCATTATTCGATAATGTTGAAAGtcgccgtc
aacaagaaactctcataaacgatggTTTACTATTTAacacgctcccttat
tcgatgaaaatacaATCCCTTTGAAATTAGGGAGCATCAACTGTATAAGG
ATtcttaccgtaagttggtctaatNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttagtct
atcagtgatttcgaccttcttattattcctatctataaagaaggatgtcg
aaattagaagacggatgtcgacattagaccaacttacggtatccAAGAGC
ATAGATATGACGTGCAATCTGATAATATAGATATGACGTGCAATCTGATA
ATACTTGAGTATGGGGGAAGACTTTTCACAAATCTTTTGGTATTGCcctt
tgggaaaatatttttttcccatcatttaaatttttttggtattGCTTATT
AAAGAGCTAGTTTTTCCCTCTGGGCAACccgatttttcatgttttggtGA
TTCGTTTCACGATTTAATCGTAATTTTATTCTTATTTCAGGGATTTAAAA
CCAGAAAATTTATTAATCGACCAGCAAGGATATATCAAGGTATTATACAT
TGGTCAAACTACTTTATTCGACAGAGTGGTCCCACTTATTTAAAACGGTA
GTTACTCGTCTACACCATTGTGTAATTTGAAGAAGTACAAAGTGCAATTT
GTTTTTGCTTCATTGGTCTTCTAATTATTTAAATGTGGACTCAGACCTTT
TGAATGATAATGAAAAAATGTCTTAGAATACCCCGACGTATTTTACAAAC
AGAATCAATGCTTTTTTTTAAAGCTTAACTCTATCAAATGggtaaacttt
caaaaaaagctctagTCAAAGTTTAAGGCCTAAATAAGTCAAATCTTTGA
AAGCTTTTAATTATATAAAAGTATTTCACGTGTTTGTCAGCCAATGAATG
AGAAAGTATATAAATGAATGACTGTATAGTCTTTAATGTTCCGTACAGTT
CATAGATAGTTGATTTGGCTGGCCATGAACctcgtgaaaacaatcgaaag
actacCTAAGAGGTCCTAGATTACTggactacatgtttttttgtttttta
taagcatacaaaaatccgaaaacaggctcagagatgcttaggtcgaaagc
ttaataaggctgaaaaatgcttgaggggatgcttaaatctaaagcataaa
tttagggaaatacaaaaaatccgtaaaattccagccaaaaaaagccaaaa
tcaggaaaaaacatttttcgtaggctcaagttaTGCTTGCCattatgctt
aatttttccccatatctgagcctacatatgcttataagtgcaatgcttat
aaaaaaaaacatgtatgcagGTAAGATGTCAACATGTAATGATTGTTAAA
TTACATTTTAGATTACAGATTTTGGGTTCGCAAAAAAAGTCAAAGGAAGA
ACTTGGACGTTGTGCGGAACACCAGAATATCTAGCTCCTGAAATTATTCT
TAGCAAGGTATAACAATATTGAGTTTTATTGATTCCAGTAATTGAATCAT
ATGATTGTGAAATAAAGCCTTTGGAGCACATTGgaaaacaaactttataa
ggCGCCCCCGGATACTCGTGAattgttaatttcattttagaattttgaga
aattttggaaaaggcatccttttgaaataaatgtgttttttttctagaat
aaTTTATAGTTCACCCTAAACCCTGAAGATTCTATTTTCTAttccgtttt
ttttttcgatctaCAGTCAACTCTATATCATTCGAATATTAtcattcgaa
ctaaaatatttgtcccctcagctagaaattagtataaaatactttcggta
attcgaatttttctctaactcgaagaaaattcttggtcccttgaagttcg
aattagagagagtaaaCTTTATACataattttcctctttttcagGGTTAT
AATAAAGCAGTCGATTGGTGGGCGTTGGGTGTTCTCATTTACGAAATGGC
TGCTGGTTACCCACCATTCTTTGCAGACCAACCTATTCAAATCTACGAAA
AAATTGTCTCAGGAAAGGTCAGTGTCTTTACCGATGCTTTTGCGTGATTT
AAGACTTTTAGTACAAAAACTTGTCAAGAGCCTCTAAAATCATTACTTAT
AAAGAGCCTCTAACGGAATTTTATCtaggggcactcgatctgaaagcAAT
CGTGCGTTCGGAAAAAATGAGGCTTTTAAGATTGGACAGAGAGAATGTTC
GAGAATTCGAGCAAAAATGATCaatattgaagaaaaatttaaacgtTCCC
CTTAAAATGATGGTTTCGTTGAATTACGAATATCGAGTAGTGCCACCATC
AGGATACAACTNAAATTTTCGAGGATTTGAGCAAAATGATCAATATTGAA
GAAGAATTACTGTAATTATGGTTTCATTGAATTACGAATATCAAGTAGTG
CCACCATTAGGAtacaactttttataaaaactccaatcaaagatggtgga
tatagcttgaTCAAGAGTATATAAAAGTCGGTGACCAGTCCCTCAAAAGC
TTACCGCGCCGTTAAGGGTTTTATAGGCGAATTCACTAGCTTTCTACAAA
TTTATCAtctttttccctctttttttctCTACAGATGCGATGTCCATCAC
ATTTCAGTCACGATTTAAAAGACTTATTAAAAGCGCTACTGCAGGTCGAT
CTAACCAAACGGTATGGTAACCTGAAGAATGGTGTTGCAGATATCAAAAA
TTGTAAATGGTTCTCTTCAACTAATTGGCTACATATTTATAATCGAAAGG
TAATCATACCTCATTTAACATCTaccccccttctcacagacccactggga
cccctcccactggaaaaatgtGCCAAAATATCGTCACCGTTGGAGGATTA
TCCTCCAcattttgtccccactgaaaataatcaaataaactaatCCTCAC
TGCAACATATTATGCTATTTTACCCATCCCCAccgaattttctgacttga
aaacaaaataattgaaattcccagccataaaaaatatgggaatatcaatc
cccatcaagtttcagtCAGTCATTTTTCTCCCCACtggttgaaaaaatcc
taccgggtctgtgagaagggagtgtatcTCCCACAATTTGCTTACACAGt
attttgaagaacaacttcCTCCTCTTTTGATGCGCCAggtgagcgcaaat
ttaaaaaattcttttttacagAGGCACGCCCTtctttctatatcataaaa
aatatctttgaaatcTCTAAGCTCTGAAGTCTAACTCTTCGATGTCAGAG
ACGCAATAGGAGACCGACGGAATTTTCTCAGTTTCAAACCTCtacataaa
aacaatgaaaaaaactctagtttagacggtcgGTTTTATGCCTGGTAGAA
GGTCGACTATAGTCGAATAGATTTTCGTTCCAACTTGAGACTAAGTTACT
AAAGACAGCGAAAAAAAATTCCCGGGTTTTTCAGCTGTTGCcgatatgaa
aaatgacgtaatcttaacTTGGCATATCACGAATAGACTACATGCTTTTC
TTAAATTGCACGACGATTTTTAGAGTCCGGATATTGCCCAGCATCTGGCT
GTGGCGTCATGTTAAGCCATTCGTTTTCGAATCCTTTAGATAAAAGACAC
ATTTTACTGCTATGTACTGTAACATGTACAGTCAAATATTCATTGTGTGC
ACCTTCATGTTATTTAAGATAATAAGTGGTCCCCTCTGTTTTACATGTCT
Tataaaggaaccgctagatacaatccgtcgtcacgattacggcgcgttct
agatgggaaataagtggcttgaCTTTTTCTCGCCTGGGAAaagttagaga
ttctactctaacCATTCGggcttttaaactcaatgcaTATAACACCAATA
TTACACTAACTAAAAACAACTTCAGTCTACAATATTTACTTATTATTATT
CTTTTCGTTGCAGCTCGAAGCACCATTTATTCCACCGTGCCGTGGCCCCG
GAGATCCAAGTAATTTTGACGATTACGAAGAAGAAGCATTGCGTATTTCT
AATAATGAAAAATGTGTACGAGAGTTTGCTGATTTTTAAAATAGAAGACA
CCAATGATTATACTCGACCCGTGGTGTTCTAGTGTAGATTTGATTGACCA
ATGGAAGTTCCTTCCCCACACTTCGTAACACGTAACTAATCACACACCAC
AATAATCTATAGAGACAGTCTCGCCNTGTAACACGTAACTAATCACACAC
GACAATAATCTATAGAGACAGTCTCACCATGTCTGAATCGATGAGAATCG
ATGGTTTGTGGACTTATCGATAATCGATGGAGGAAATACCCAGACGAATG
GTATCTCAACATTGATTTATCAAATTGGGCGTTGCAGATCTTTTTGATGG
GCGTTGTTTTGGGCGTTATGATTTCGTCGTAAGATTCAATGGACGATTTt
agagaaatttgaaaatgatttttgaaataagTTATTTGACCTGACGGAAG
GGATGTGAGTTTGTTTGAAGGGAATGGTTTTTGAATAGTTTTGTTATTAC
AGTCAgctctctcttattcgaacctctataatttgattttttctgtaatt
cgaactaaaatattggtcccctcagtgGAAAAGTGgtgtaaaatactctc
tataattcgaatctttctctaaatcgaaaaaaagagaagatcgaattaga
ggaaGGGAACTGTAATTGTTTCTTTAGATTATTAGAACATNGAAGATCGA
ATTGGAGGAAGGGAACTGTAATTGTTTCTTTAGATTATTAGAACATTGCT
GTTAAAAGGAAATCAAATTGGTTACGAATTTTAAAAACCTTGATTGAAAG
CACTTGCTTTAGGAAATCTAATGGTactgaaaatcagaaaattaccTTCT
ATCAGAGCCTCTAAATAAGTCACTTTACCGTGGTCCCAAGAGGGAAtaga
attttcatcaaataagggaacgtgtcgaatagtagagcatCGTTTCATTT
ATGAGAGTTTATTGTTGACGCTAACTTTCAGTATTTACTGGAGCACATCG
AATAAAGGATGGACGTCTAATTAGAGATTGTCAACTGTATATTCACTGGG
GATCTCTTTTGTTTCGATGcaaatcattgagtttcaagcccgaagggcta
gaggcgaaactttaagctttctcggGCAAGAGAAactgaagctacttatt
tcccatccaaaacgcgcatagaacgcggttcctttgttttggaggactac
ttttttggaaatctagcgatagattttagtttcgattcggcgtttgtgta
aaaactacgcgtgggtgttctggatgggaaattagcttcatttcccatcc
aggagtctcgcctctagcccttcgggtttgaaactcaatggtgcAAATCT
CTTTAGCCTCAATTTATCATATTATATAGTTTTTAATAGTTAGTAGATGA
GAGTATTTTTAGCTTGCTAATTTTCCGCCGTGGGATTTCATACGTAGTGT
GTTCAATTGAAtttaagaaccagtaaattttagCTGAGctgttcttaatc
ttttgaaatttttaggcttaaatgttcttacgatattcttagggtttaaa
atctgttaaagcCATTACTTTCTTAGTAGTAtcgaaatctgaggctcaga
atgttctttatttgttcttaggttttggccttAGGTTTCAAGCAAAGAGA
GCTTTATAAGGCCTAGAATTCAGAAAGCTAAAAGGATCACGGCATGTTTT
AGCACCCAAAGTATGTTTTTTATacataatttaatttttgtgtgtttttg
tGAGCATAACAATTAATGAACTTTTCTGTACGATAattacttttttgatt
ttcaaccaAAAGACTCTTGAAAAGGATTTGAAAGTTAATCAACGCAAAAT
TCAGCTAGATATTTTACTCTATaactaattttaccagttttggGGGTTTA
AACCCGTATTGCTAATATTTTAACATTGTAGGTTCATATCAAGGTATCTC
TAGTTTTGTATTtcgtgcaaaaaaaaattattttcagtgtattaaaatta
aatgaaaatcaaatgtttgtattgaaaaatTAATTGCGTTTGGCATGAAA
TAATAtggcaaatatattttttatcgtGACTTTCTGTTAAACCAGTCATA
GCGCCAATAAGCGCCTTTACTTTGAAAGGTTAACgtgaaatagaaaaata
atattttgtataCAAAATTCtaatattctaaaaaaaaattataatttttg
cgACTTTTTAGATTGATCTTTTGTCTgtttttttgttggtttttttattt
ttaatatttttgtttttgaaaaattgtataGGTCATATTTTGTTGCTGTC
CAAAATTATAAAACATTATTGTATCATCGTATCACgtccacttttgaaaa
atatgtataATCTTGTagtagaaaagaaaaattgtaatttaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031963XLOC_031963Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050471-exon-scaffold_173-1491911889:6307..6378TCONS_00050471-exon-scaffold_173-1491911889:6307..6378Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1510915933:6307..6378TCONS_00050471-exon-scaffold_173-1510915933:6307..6378Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1575043694:6307..6378TCONS_00050471-exon-scaffold_173-1575043694:6307..6378Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1491911889:7144..7454TCONS_00050471-exon-scaffold_173-1491911889:7144..7454Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1510915933:7144..7454TCONS_00050471-exon-scaffold_173-1510915933:7144..7454Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1575043694:7144..7454TCONS_00050471-exon-scaffold_173-1575043694:7144..7454Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1491911889:7859..7920TCONS_00050471-exon-scaffold_173-1491911889:7859..7920Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1510915933:7859..7920TCONS_00050471-exon-scaffold_173-1510915933:7859..7920Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1575043694:7859..7920TCONS_00050471-exon-scaffold_173-1575043694:7859..7920Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1491911889:8256..8384TCONS_00050471-exon-scaffold_173-1491911889:8256..8384Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1510915933:8256..8384TCONS_00050471-exon-scaffold_173-1510915933:8256..8384Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1575043694:8256..8384TCONS_00050471-exon-scaffold_173-1575043694:8256..8384Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1491911889:8876..8974TCONS_00050471-exon-scaffold_173-1491911889:8876..8974Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1510915933:8876..8974TCONS_00050471-exon-scaffold_173-1510915933:8876..8974Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1575043694:8876..8974TCONS_00050471-exon-scaffold_173-1575043694:8876..8974Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1491911889:9873..9955TCONS_00050471-exon-scaffold_173-1491911889:9873..9955Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1510915933:9873..9955TCONS_00050471-exon-scaffold_173-1510915933:9873..9955Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1575043694:9873..9955TCONS_00050471-exon-scaffold_173-1575043694:9873..9955Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1491911889:10355..10432TCONS_00050471-exon-scaffold_173-1491911889:10355..10432Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1510915933:10355..10432TCONS_00050471-exon-scaffold_173-1510915933:10355..10432Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1575043694:10355..10432TCONS_00050471-exon-scaffold_173-1575043694:10355..10432Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1491911889:11297..11345TCONS_00050471-exon-scaffold_173-1491911889:11297..11345Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1510915933:11297..11345TCONS_00050471-exon-scaffold_173-1510915933:11297..11345Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1575043694:11297..11345TCONS_00050471-exon-scaffold_173-1575043694:11297..11345Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1491911889:12168..12263TCONS_00050471-exon-scaffold_173-1491911889:12168..12263Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1510915933:12168..12263TCONS_00050471-exon-scaffold_173-1510915933:12168..12263Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1575043694:12168..12263TCONS_00050471-exon-scaffold_173-1575043694:12168..12263Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1491911889:12701..12823TCONS_00050471-exon-scaffold_173-1491911889:12701..12823Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1510915933:12701..12823TCONS_00050471-exon-scaffold_173-1510915933:12701..12823Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1575043694:12701..12823TCONS_00050471-exon-scaffold_173-1575043694:12701..12823Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1491911889:13391..13555TCONS_00050471-exon-scaffold_173-1491911889:13391..13555Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1510915933:13391..13555TCONS_00050471-exon-scaffold_173-1510915933:13391..13555Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1575043694:13391..13555TCONS_00050471-exon-scaffold_173-1575043694:13391..13555Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1491911889:14720..17199TCONS_00050471-exon-scaffold_173-1491911889:14720..17199Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1510915933:14720..17199TCONS_00050471-exon-scaffold_173-1510915933:14720..17199Clytia hemisphaericaexon
TCONS_00050471-exon-scaffold_173-1575043694:14720..17199TCONS_00050471-exon-scaffold_173-1575043694:14720..17199Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_173supercontigscaffold_173:6307..17199 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.72941	2.76217	2.84384	3.72108	83.3226	60.2124	57.8945	61.7152	29.0135	34.6146	23.0705	18.8939	15.073	13.2095	10.7521	10.489	27.3242	22.0611	14.3726	17.6503	30.737	32.4926	17.6583	21.493	30.2319	30.8299	32.0898	29.9946	35.6447	34.0995
Blast
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BLAST of TCONS_00050471 vs. Swiss-Prot (Human)
Match: KAPCA (cAMP-dependent protein kinase catalytic subunit alpha OS=Homo sapiens GN=PRKACA PE=1 SV=2)

HSP 1 Score: 585.489 bits (1508), Expect = 0.000e+0
Identity = 272/336 (80.95%), Postives = 307/336 (91.37%), Query Frame = 2 
Query:  383 LKGFLNQCQTDFKAKWEIPAKNTASLEEFDRLKTLGTGSFGRVMLCCHRESKKYYAMKILDKQKVVRLKQVEHTLNEKRILQAVDFPFLVNLDFHFKDNSNLYMVLEFVPGGEMFSHLRRIGRFSEPHSRFYAAQIVLAFEYLHHLDLIYRDLKPENLLIDQQGYIKITDFGFAKKVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKMRCPSHFSHDLKDLLKALLQVDLTKRYGNLKNGVADIKNCKWFSSTNWLHIYNRKLEAPFIPPCRGPGDPSNFDDYEEEALRISNNEKCVREFADF 1390
            +K FL + + DF  KWE PA+NTA L++F+R+KTLGTGSFGRVML  H+E+  +YAMKILDKQKVV+LKQ+EHTLNEKRILQAV+FPFLV L+F FKDNSNLYMV+E+VPGGEMFSHLRRIGRFSEPH+RFYAAQIVL FEYLH LDLIYRDLKPENLLIDQQGYI++TDFGFAK+VKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGK+R PSHFS DLKDLL+ LLQVDLTKR+GNLKNGV DIKN KWF++T+W+ IY RK+EAPFIP  +GPGD SNFDDYEEE +R+S NEKC +EF++F
Sbjct:   16 VKEFLAKAKEDFLKKWESPAQNTAHLDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSINEKCGKEFSEF 351
The following BLAST results are available for this feature:
BLAST of TCONS_00050471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KAPCA0.000e+080.95cAMP-dependent protein kinase catalytic subunit al... [more]
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