TCONS_00050479 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050479
Unique NameTCONS_00050479
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length947

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050479 ID=TCONS_00050479|Name=TCONS_00050479|organism=Clytia hemisphaerica|type=transcript|length=947bp
acagaGGAGCTTATTTTGGAAGCTGTCACCTTAGTAACAGTTGAGGAAAG
TCGCGTCCCTACCAACGAAGATATTTTATCCTTGGTACAGCTTGCAGAAA
ATACCTCGTTGCTAGGAACAATGCTGCTAGAGGAAGCAGTCAACATCTCT
AATGAAGTCACCTCCACCTCAAAGATTGGAAAGCTCTCATACCAAGTAGA
ACTTCTCGTGTACGCCCATTACTGTTTCACCATTACGTGTGATATGGAGG
GAATAGCCGGTGTTCTTCGCACCACACAACATTGTACCAAGAGGCTAGCC
AAACGAAATCAATACAGTCTGATGGTGAGATTGTTGACGGGGATTGGTCG
TTTCCGTGAAATGTTCTACGTTATCGAAACGCTGTACAATCAACACCATT
TTGAAGTTCTCTGTCGTAAAGGGAAAGGTGACGTCAAGGAGAACCAATTG
AAAATGGCTTTGTTAGACTTCATGAAACGTTATCATCCAGAAGATGTAGA
AAACCTGAACATGATCTCCGTTGGTTTCGGAATGTATCGCGAAGCGGCCG
AACATCTAGAAAAACAAGGTcgtaaagaaattgaaagaatCAAACATGAT
TTAAAATCAGGTGCATCAAAAGAGGTGTCTAACACACTGGAAGAAATacg
aaaaactttttcatatGCTGCTGAAAATTATTCCAAAGAGGAATGTCTTT
ATCTTGAGCAGAGCTGTACAAGACTGGCTCATCTAGCAAAGCTGCAAATC
CAACTTCTCCCTTCTGGTGTGCAAGTTTTAGGGCTAACCAAACTTCAAAC
AcaagaatttttaaatacacaTCAAGATTTCGTTGAGGTACTGTTTTAGC
ATAAATCAGATCCTGGGGTGgggagtacttaggcaaatggagggtaaggt
atgtgccgcccttaagggtacctttttggatttccaaagtcccgcta
Run BLAST on NCBI

protein sequence of TCONS_00050479-protein

>TCONS_00050479-protein ID=TCONS_00050479-protein|Name=TCONS_00050479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
TEELILEAVTLVTVEESRVPTNEDILSLVQLAENTSLLGTMLLEEAVNIS
NEVTSTSKIGKLSYQVELLVYAHYCFTITCDMEGIAGVLRTTQHCTKRLA
KRNQYSLMVRLLTGIGRFREMFYVIETLYNQHHFEVLCRKGKGDVKENQL
KMALLDFMKRYHPEDVENLNMISVGFGMYREAAEHLEKQGRKEIERIKHD
LKSGASKEVSNTLEEIRKTFSYAAENYSKEECLYLEQSCTRLAHLAKLQI
QLLPSGVQVLGLTKLQTQEFLNTHQDFVEVLF
Run BLAST on NCBI

transcript from alignment at scaffold_173:79086..85350-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050479 ID=TCONS_00050479|Name=TCONS_00050479|organism=Clytia hemisphaerica|type=transcript|length=6265bp|location=Sequence derived from alignment at scaffold_173:79086..85350- (Clytia hemisphaerica)
ACAGAGGAGCTTATTTTGGAAGCTGTCACCTTAGTAACAGTTGAGGAAAG
TCGCGTCCCTACCAACGAAGATATTTTATCCTTGGTACAGCTTGCAGAAA
ATACCTCGTTGCTAGGAACAATGCTGCTAGAGGAAGCAGTCAACATCTCT
AATGAAGTCACCTCCACCTCAAAGATTGGAAGTACGGAAAAATGTTCCTA
AGTCAGATAATATAGCTTTGAAGGGGGGGTCCCAAAGAAGCAATTTATGG
ACTCCAAAGATTTTTTTTGGACTTTTCCAAGGAGTTTCATTTATGTTTTT
TTCAATGGGTTTCCTCCACCGGTATGGATTTTTAACTATTTTCAACATAA
GGATTTTTTTATGCAAAATGTATTTCCATTTTGGTATTTACCATCCTATT
CTCTTTAGAGCTCTCATACCAAGTAGAACTTCTCGTGTACGCCCATTACT
GTTTCACCATTACGTGTGATATGGAGGGAATAGCCGGTGTTCTTCGCACC
ACACAGCATTGTACCAAGAGGCTAGCCAAACGAAATCAATACAGTCTGAT
GGTGAGATTGTTGACGGGGATTGGTCGTTTCCGTGAAATGTTCTACGTTA
TCGAAACACTGTACAATCAACACCATTTTGAAGTTCTCTGTCGTAAAGGG
AAAGGTGACGTCAAGGTGAGCGGATTACCTGATTTAAAGGTTTTGTTTTT
AAATAAGAGTGATATCGTTTGCTTACTCATCAATTTTAATTTACAAGCTT
TTCCACATTGAATTGGCACAGATGTGGTGCAATATTGGTCAGAAAGAGGA
AAAAAGCACAATATAACAATAGAGAGACACTGTTCTGATCTGGAAAATGT
GCCTGATATGAAACGTAAAAATAAAACTTTCAAGTTTCGCGAACGTTAGT
TTGGCAGATTTTTGAACTTTTTGAACAAAATTTACGGGAAAAAACTTATG
CGATTTAAAAAAAATATTTTCTTTTAACGGGGATAACTTTCTCGAATAGC
TAAGGAAAGCGAATGGAAAATCCTTTCAAATTTTTTTTCTTCGATCGTAT
CATTTTTATTGTCAATTGAAAAAAAACAACATTATAAAATGGAATCATGA
AAAGTGAATGGTTTAGACTCTTCGTTGCCACCATTAGCGATAGCAACTGA
AAAATTATTTTCGTGGATTCTCTACCATCAAGCATGATTCCATTGTCAAT
TGCCGATTTTTTGCACAAAGATGCTGATTTTAGCAATGCCCAAAATNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTTTTTTCAATGGGTTTCCTCCACCGGTAT
GGATTTTTAATTATTTTCAACATAAGGATTTTTTTATGCAAAATGTATTT
CCATTTTGGTATTTACCATCCTATTCTCTTTAGAGCTCTCATACCAAGTA
GAACTTCTCGTGTACGCCCATTACTGTTTCACCATTACGTGTGATATGGA
GGGAATAGCCGGTGTTCTTCGCACCACACAACATTGTACCAAGAGGCTAG
CCAAACGAAATCAATACAGTCTGATGGTGAGATTGTTGACGGGGATTGGT
CGTTTCCGTGAAATGTTCTACGTTATCGAAACGCTGTACAATCAACACCA
TTTTGAAGTTCTCTGTCGTAAAGGGAAAGGTGACGTCAAGGTGAGCGGAT
TACCTGATTTAAAGGTTTTGTTTTTAAATAAGAGTGATATCGTTTGCTTA
CTCATCAATTTTAATTTACAAGCTTTTCCACATTGAATTGGCACAGATGT
GGTGCAATATTGGTCAGAAAGAGGAAAAAAGCACAATATAACAATAGAGA
GACACTGTTCTGATCTGGAAAATGTGTCTGATATGAAACGTAAAAATAAA
ACTTTCAAGTTTCGCGAACGTTAGTTTGGCAGATTTTTGAACTTTTTGAT
CAAAATTTACGGGAAAAAACTTGTGCGATTTAAAAAAAATAATTTCTTTT
CACGGGGATAACTTTCTCGAATAGCTAAGGAAAGCGAATGGAAAATCCTT
TCAAATTTTTTTTCTTCGATCGTATCATTTTTATTGTCAATTGAAAAAAA
ACAACATTATAAAATGGAATCATGAAAAGTGAATGGTTTAGACTCTTCGT
TGCCACCATTAGCGATAGCAACTGAAAAATTATTTTCGTGGATTCTCTAC
CATCAAGCATGATTCCATTGTCAATTGCCGATTTTTTGCACAAAGATGCT
GATTTTAGCAATGCCCAAAATCTGGCCGATTCGGATTTTTGAGAAAAAAT
TTTTCCGGCCGAAAAGGGCGGAATTATGCCGGAAATCGCCGCTTCTGCAG
ATTTTCATTGAACTTTTTCCTAATATTTCTTTGTGTTTTTTTTCTTCACA
CAAAGACATTATTGATAATAGCAATTCCCACCATCAAGCATTATTCAATT
GTCAATAAAACTGATCGTTCTTTTTTCACGATCTTTTCCATTATCCGATT
ATTTCCATAAACTCGAACAATTCTTCCGGTGGCTTGATGACATTCTTAGG
CTATTCTGCCTCTCTATAACTCGAATGTTTTCCAATATTATACTTCCCTA
CTTGCTCTAACTTCATTCATCAGGTAGGTTCAATCATCGTTCCGGCTTGT
TATAAAAGAGTCATTTTCTCTTCTTAATAGGAGAACCAATTGAAAATGGC
TTTGTTAGACTTCATGAAACGTTATCATCCAGAAGATGTAGAAAACCTGA
ACATGATCTCCGTTGGTTTCGGAATGTATCGCGAAGCGGCCGAACATCTA
GAAAAACAAGGTCGTAAAGAAATTGAAAGAATCAAACATGATTTAAAATC
AGGTGAGCGTTCACGTAATAACTTGAGTGCTAAGTTAGAAATGTCCTCTG
TTTTGACAAAAAAAAAACCTTCATTTTTGTGGAAATGATACTAAAGTCTG
TCTCGATATAATTTGCAGCCGAGACAAAAAAGGCTATAAATAACTTTTAA
TAAAATTCCAATTAGATAGCGGTTTTGTACTCGTTGAAAAGACAAACAGG
AGTGGCATTTTATCATAAAGAAAAAAACTCAAAAAAGATCAGAAAATGAA
GAAGAAGAAAATTAACTTCTTCAATAATTCTATCAAAAGTTACAGCCTTT
TTTGTCTGTGCTGCAAATTATATTGAGAAAGACTTTAATAAAATATTTTG
AATATTCAGAATTTGTGTGGCGATAGTCAAATTCCTAATTATTTTGTCTC
TTGAGATTCTATAAGACATTTCCATTAGGTATTTGAACTTCGAGGTTACT
CTAATTTGTGGAACTTTGATGGGTATATTAGGCTTCTCCAGAAAAAAGTA
TGGGGTTTTAAGGTTTGGAACATCTGGGGGGTATATAGGCATAAAAAAGG
CTGCGTATCCAGGGGGTTACTCAATAGGTGTGGTGACTCTTGTAAATATC
CAGGGGGTCGCATTGTGTGTTTCAATAAAAATGTTGAACATGTTCAAGTT
GTATCCAGTAGTAGAGGTTTAAGCTATAGTTTGAAAGAACGAGTCAAGAT
TCAATACTAAACCAGTTTTACACAAATTATATAGATCTTAAAGGAACATT
AAAGTAGTACGCAAACTACGTGTCATTAAAGAAAATGATTAAAATCATGT
GCCCAAAACAAACTTATAAAACAATTGAAACAATCAAAATCAGCTATATT
TGTTTTGATTTTGTCCCGCTCCCGCTGCATACGGTTTGTTTTCAAATTTC
GTCAGTACTTTTATGTCCCTTTAAAATTGGACGTTAAATAATATCCTCAT
CAACCCCTATACAACTTTTTCTGGAAGAGCCCATTATTCTTCAGTCATGA
GTTATTATTGTCTTTTTTAAGGTGCATCAAAAGAGGTGTCTAACACACTG
GAAGAAATACGAAAAACTTTTTCATATGCTGCTGAAAATTATTCCAAAGT
AAGTACTATAATAATGATATTGTGCATCAGAAAGTGAAAATGTTTGTGCT
CAAGTGGCCTAGGGTCCACTTAAGGCTTTCGGGTGGACTGGGATGGCGCG
ACTCAAGCGGCCCGGATCAATATGGCACCCATCACTCTTTTTACTTTGCC
TTTGCACAACATAAAACCGTCAGTTAGATTTTATTTGTTTTTGGAAGGTA
GAAAATGGACAGGGCAAAGTTCTTACATGTTTTTTTTTTCTATGCTAAAC
ATAGCTCATTTGTTTAAGAACAATTGAATGCTTTGCATAGTGCGAGCCTG
ATATAGGCGCAAATACTTGTATTTGAAAACAGGTTATTAAAAATCTGTTA
TTCATGCTGGTTTCTCATCTCTTAATTATAATTTTCATCTTCTACTACAG
TAAAATACTTCTTATGTTTTGAAAAAAATTTTCGTAAGCATATCACTAAG
CATAATCTGAGGCTGAAAATAAAATTTTGCTAAGCATATTGAGCTTCGAC
CCGATTTCCCCGTATGCCTATAAAAAAAAGAGTATATTGGCAGGGCCGCT
GGCTTGAGGACTGAAGTGAGGGGGCCAAATATTGGAGTAAATTGGCNAAG
AGTATATTGGCAGGGCCTCTGGCTTGAGGACTGAAGCGAGGGGGCCAAAT
ATTGGAGTAGGGTAACGGAGCTATTTTAGGACGCATTTCGAGTCTTTTTG
AAAATAATTTATTGAAAAGTAACTGAAAGTTTTCAGAATAGGCTTTCTCG
GCAAAAAAAAAGTGAGGGGGTCATGGCCGCCCCTGCCCCGATGACGGGGA
CCATGATTTGAAAGTTCTCACGAGTTATAACAAAATAATCGATTTCCGTT
TTCAGGAGGAATGTCTTTATCTTGAGCAGAGCTGTACAAGACTGGCTCAT
CTAGCAAAGCTGCAAATCCAACTTCTCCCTTCTGGTGTGCAAGTTTTAGG
GCTAACCAAACTTCAAACACAAGAATTTTTAAATACACATCAAGATTTCG
TTGAGGTACTGTTTTAGCATAAATCAGATCCTGGGGTGGGGAGTACTTAG
GCAAATGGAGGGTAAGGTATGTGCCGCCCTTAAGGGTACCTTTTTGGATT
TCCAAAGTCCCGCTA

Coding sequence (CDS) from alignment at scaffold_173:79086..85350-

>TCONS_00050479 ID=TCONS_00050479|Name=TCONS_00050479|organism=Clytia hemisphaerica|type=CDS|length=4245bp|location=Sequence derived from alignment at scaffold_173:79086..85350- (Clytia hemisphaerica)
GAGGAATGTCTTTATCTTGAGCAGAGCTGTACAAGACTGGCTCATCTAGC
AAAGCTGCAAATCCAACTTCTCCCTTCTGGTGTGCAAGTTTTAGGGCTAA
CCAAACTTCAAACACAAGAATTTTTAAATACACATCAAGATTTCGTTGAG
GTACTGTTTTAGGTGCATCAAAAGAGGTGTCTAACACACTGGAAGAAATA
CGAAAAACTTTTTCATATGCTGCTGAAAATTATTCCAAAGAGAACCAATT
GAAAATGGCTTTGTTAGACTTCATGAAACGTTATCATCCAGAAGATGTAG
AAAACCTGAACATGATCTCCGTTGGTTTCGGAATGTATCGCGAAGCGGCC
GAACATCTAGAAAAACAAGGTCGTAAAGAAATTGAAAGAATCAAACATGA
TTTAAAATCAGAGCTCTCATACCAAGTAGAACTTCTCGTGTACGCCCATT
ACTGTTTCACCATTACGTGTGATATGGAGGGAATAGCCGGTGTTCTTCGC
ACCACACAACATTGTACCAAGAGGCTAGCCAAACGAAATCAATACAGTCT
GATGGTGAGATTGTTGACGGGGATTGGTCGTTTCCGTGAAATGTTCTACG
TTATCGAAACGCTGTACAATCAACACCATTTTGAAGTTCTCTGTCGTAAA
GGGAAAGGTGACGTCAAGACAGAGGAGCTTATTTTGGAAGCTGTCACCTT
AGTAACAGTTGAGGAAAGTCGCGTCCCTACCAACGAAGATATTTTATCCT
TGGTACAGCTTGCAGAAAATACCTCGTTGCTAGGAACAATGCTGCTAGAG
GAAGCAGTCAACATCTCTAATGAAGTCACCTCCACCTCAAAGATTGGAAG
AGGAATGTCTTTATCTTGAGCAGAGCTGTACAAGACTGGCTCATCTAGCA
AAGCTGCAAATCCAACTTCTCCCTTCTGGTGTGCAAGTTTTAGGGCTAAC
CAAACTTCAAACACAAGAATTTTTAAATACACATCAAGATTTCGTTGAGG
TACTGTTTTAGGTGCATCAAAAGAGGTGTCTAACACACTGGAAGAAATAC
GAAAAACTTTTTCATATGCTGCTGAAAATTATTCCAAAGAGAACCAATTG
AAAATGGCTTTGTTAGACTTCATGAAACGTTATCATCCAGAAGATGTAGA
AAACCTGAACATGATCTCCGTTGGTTTCGGAATGTATCGCGAAGCGGCCG
AACATCTAGAAAAACAAGGTCGTAAAGAAATTGAAAGAATCAAACATGAT
TTAAAATCAGAGCTCTCATACCAAGTAGAACTTCTCGTGTACGCCCATTA
CTGTTTCACCATTACGTGTGATATGGAGGGAATAGCCGGTGTTCTTCGCA
CCACACAACATTGTACCAAGAGGCTAGCCAAACGAAATCAATACAGTCTG
ATGGTGAGATTGTTGACGGGGATTGGTCGTTTCCGTGAAATGTTCTACGT
TATCGAAACGCTGTACAATCAACACCATTTTGAAGTTCTCTGTCGTAAAG
GGAAAGGTGACGTCAAGACAGAGGAGCTTATTTTGGAAGCTGTCACCTTA
GTAACAGTTGAGGAAAGTCGCGTCCCTACCAACGAAGATATTTTATCCTT
GGTACAGCTTGCAGAAAATACCTCGTTGCTAGGAACAATGCTGCTAGAGG
AAGCAGTCAACATCTCTAATGAAGTCACCTCCACCTCAAAGATTGGAAGA
GGAATGTCTTTATCTTGAGCAGAGCTGTACAAGACTGGCTCATCTAGCAA
AGCTGCAAATCCAACTTCTCCCTTCTGGTGTGCAAGTTTTAGGGCTAACC
AAACTTCAAACACAAGAATTTTTAAATACACATCAAGATTTCGTTGAGGT
ACTGTTTTAGGTGCATCAAAAGAGGTGTCTAACACACTGGAAGAAATACG
AAAAACTTTTTCATATGCTGCTGAAAATTATTCCAAAGAGAACCAATTGA
AAATGGCTTTGTTAGACTTCATGAAACGTTATCATCCAGAAGATGTAGAA
AACCTGAACATGATCTCCGTTGGTTTCGGAATGTATCGCGAAGCGGCCGA
ACATCTAGAAAAACAAGGTCGTAAAGAAATTGAAAGAATCAAACATGATT
TAAAATCAGAGCTCTCATACCAAGTAGAACTTCTCGTGTACGCCCATTAC
TGTTTCACCATTACGTGTGATATGGAGGGAATAGCCGGTGTTCTTCGCAC
CACACAACATTGTACCAAGAGGCTAGCCAAACGAAATCAATACAGTCTGA
TGGTGAGATTGTTGACGGGGATTGGTCGTTTCCGTGAAATGTTCTACGTT
ATCGAAACGCTGTACAATCAACACCATTTTGAAGTTCTCTGTCGTAAAGG
GAAAGGTGACGTCAAGACAGAGGAGCTTATTTTGGAAGCTGTCACCTTAG
TAACAGTTGAGGAAAGTCGCGTCCCTACCAACGAAGATATTTTATCCTTG
GTACAGCTTGCAGAAAATACCTCGTTGCTAGGAACAATGCTGCTAGAGGA
AGCAGTCAACATCTCTAATGAAGTCACCTCCACCTCAAAGATTGGAAGAG
GAATGTCTTTATCTTGAGCAGAGCTGTACAAGACTGGCTCATCTAGCAAA
GCTGCAAATCCAACTTCTCCCTTCTGGTGTGCAAGTTTTAGGGCTAACCA
AACTTCAAACACAAGAATTTTTAAATACACATCAAGATTTCGTTGAGGTA
CTGTTTTAGGTGCATCAAAAGAGGTGTCTAACACACTGGAAGAAATACGA
AAAACTTTTTCATATGCTGCTGAAAATTATTCCAAAGAGAACCAATTGAA
AATGGCTTTGTTAGACTTCATGAAACGTTATCATCCAGAAGATGTAGAAA
ACCTGAACATGATCTCCGTTGGTTTCGGAATGTATCGCGAAGCGGCCGAA
CATCTAGAAAAACAAGGTCGTAAAGAAATTGAAAGAATCAAACATGATTT
AAAATCAGAGCTCTCATACCAAGTAGAACTTCTCGTGTACGCCCATTACT
GTTTCACCATTACGTGTGATATGGAGGGAATAGCCGGTGTTCTTCGCACC
ACACAACATTGTACCAAGAGGCTAGCCAAACGAAATCAATACAGTCTGAT
GGTGAGATTGTTGACGGGGATTGGTCGTTTCCGTGAAATGTTCTACGTTA
TCGAAACGCTGTACAATCAACACCATTTTGAAGTTCTCTGTCGTAAAGGG
AAAGGTGACGTCAAGACAGAGGAGCTTATTTTGGAAGCTGTCACCTTAGT
AACAGTTGAGGAAAGTCGCGTCCCTACCAACGAAGATATTTTATCCTTGG
TACAGCTTGCAGAAAATACCTCGTTGCTAGGAACAATGCTGCTAGAGGAA
GCAGTCAACATCTCTAATGAAGTCACCTCCACCTCAAAGATTGGAAGAGG
AATGTCTTTATCTTGAGCAGAGCTGTACAAGACTGGCTCATCTAGCAAAG
CTGCAAATCCAACTTCTCCCTTCTGGTGTGCAAGTTTTAGGGCTAACCAA
ACTTCAAACACAAGAATTTTTAAATACACATCAAGATTTCGTTGAGGTAC
TGTTTTAGGTGCATCAAAAGAGGTGTCTAACACACTGGAAGAAATACGAA
AAACTTTTTCATATGCTGCTGAAAATTATTCCAAAGAGAACCAATTGAAA
ATGGCTTTGTTAGACTTCATGAAACGTTATCATCCAGAAGATGTAGAAAA
CCTGAACATGATCTCCGTTGGTTTCGGAATGTATCGCGAAGCGGCCGAAC
ATCTAGAAAAACAAGGTCGTAAAGAAATTGAAAGAATCAAACATGATTTA
AAATCAGAGCTCTCATACCAAGTAGAACTTCTCGTGTACGCCCATTACTG
TTTCACCATTACGTGTGATATGGAGGGAATAGCCGGTGTTCTTCGCACCA
CACAACATTGTACCAAGAGGCTAGCCAAACGAAATCAATACAGTCTGATG
GTGAGATTGTTGACGGGGATTGGTCGTTTCCGTGAAATGTTCTACGTTAT
CGAAACGCTGTACAATCAACACCATTTTGAAGTTCTCTGTCGTAAAGGGA
AAGGTGACGTCAAGACAGAGGAGCTTATTTTGGAAGCTGTCACCTTAGTA
ACAGTTGAGGAAAGTCGCGTCCCTACCAACGAAGATATTTTATCCTTGGT
ACAGCTTGCAGAAAATACCTCGTTGCTAGGAACAATGCTGCTAGAGGAAG
CAGTCAACATCTCTAATGAAGTCACCTCCACCTCAAAGATTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031965XLOC_031965Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050479-proteinTCONS_00050479-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050479-exon-scaffold_173-1575043694:85170..85350TCONS_00050479-exon-scaffold_173-1575043694:85170..85350Clytia hemisphaericaexon
TCONS_00050479-exon-scaffold_173-1575043694:82461..82717TCONS_00050479-exon-scaffold_173-1575043694:82461..82717Clytia hemisphaericaexon
TCONS_00050479-exon-scaffold_173-1575043694:81299..81470TCONS_00050479-exon-scaffold_173-1575043694:81299..81470Clytia hemisphaericaexon
TCONS_00050479-exon-scaffold_173-1575043694:80203..80279TCONS_00050479-exon-scaffold_173-1575043694:80203..80279Clytia hemisphaericaexon
TCONS_00050479-exon-scaffold_173-1575043694:79086..79345TCONS_00050479-exon-scaffold_173-1575043694:79086..79345Clytia hemisphaericaexon
TCONS_00050479-exon-scaffold_173-1510915933:85170..85350TCONS_00050479-exon-scaffold_173-1510915933:85170..85350Clytia hemisphaericaexon
TCONS_00050479-exon-scaffold_173-1510915933:82461..82717TCONS_00050479-exon-scaffold_173-1510915933:82461..82717Clytia hemisphaericaexon
TCONS_00050479-exon-scaffold_173-1510915933:81299..81470TCONS_00050479-exon-scaffold_173-1510915933:81299..81470Clytia hemisphaericaexon
TCONS_00050479-exon-scaffold_173-1510915933:80203..80279TCONS_00050479-exon-scaffold_173-1510915933:80203..80279Clytia hemisphaericaexon
TCONS_00050479-exon-scaffold_173-1510915933:79086..79345TCONS_00050479-exon-scaffold_173-1510915933:79086..79345Clytia hemisphaericaexon
TCONS_00050479-exon-scaffold_173-1491911889:85170..85350TCONS_00050479-exon-scaffold_173-1491911889:85170..85350Clytia hemisphaericaexon
TCONS_00050479-exon-scaffold_173-1491911889:82461..82717TCONS_00050479-exon-scaffold_173-1491911889:82461..82717Clytia hemisphaericaexon
TCONS_00050479-exon-scaffold_173-1491911889:81299..81470TCONS_00050479-exon-scaffold_173-1491911889:81299..81470Clytia hemisphaericaexon
TCONS_00050479-exon-scaffold_173-1491911889:80203..80279TCONS_00050479-exon-scaffold_173-1491911889:80203..80279Clytia hemisphaericaexon
TCONS_00050479-exon-scaffold_173-1491911889:79086..79345TCONS_00050479-exon-scaffold_173-1491911889:79086..79345Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_173supercontigscaffold_173:79086..85350 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.94062	3.66994	1.03418	0.972454	5.06681	4.1256	5.61233	7.89447	5.25849	6.41455	7.4103	4.46873	5.23314	5.67733	8.03026	8.55806	8.57491	7.70411	5.55718	7.049	6.5098	4.44955	6.81672	8.35332	4.8825	5.28596	3.88114	4.53969	7.02085	5.91214
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028107Spatacsin_C_dom
Blast
[Close]
BLAST of TCONS_00050479 vs. Swiss-Prot (Human)
Match: SPTCS (Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 1.536e-38
Identity = 96/243 (39.51%), Postives = 136/243 (55.97%), Query Frame = 1 
Query:   58 PTNED--ILSLVQLAENTSLLGTMLLEEAVNISNEVTSTSKIGKLSYQVELLVYAHYCFTITCDMEGIAGVLRTTQHCT-KRLAKRNQYSLMVRLLTGIGRFREMFYVIETLYNQHHFEVLCRKGKGDVKENQLKMALLDFMKRYHPEDVENLNMISVGFGMYREAAEHLEKQGRKEIERIKHDLKSGASKE---VSNTLEEIRKTFSYAAENYSKEECLYLEQSCTRLAHLAKLQIQLLPSG 768
            PT E    L L  L ++ +L+G  LL++  ++ +        G+LS   ELL+ AH+CFT+TC MEGI  VL+     T   LA   +Y L+VRLLTGIGR+ EM Y+ + L+ +H+FEVL RK K D     LK ALLD++KR  P D E  NMI++ F M RE  E+ E   R +++ I+      + K+   +   L +       AAE+Y+K+ C+   Q C RL  L  LQI  L +G
Sbjct: 2076 PTEESQTFLQLTTLCQDRTLVGMKLLDKISSVPH--------GELSCTTELLILAHHCFTLTCHMEGIIRVLQAAHMLTDNHLAPSEEYGLVVRLLTGIGRYNEMTYIFDLLHKKHYFEVLMRK-KLD-PSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENHEAAARIQLKLIESQPWEDSLKDGHQLKQLLLKALTLMLDAAESYAKDSCVRQAQHCQRLTKLITLQIHFLNTG 2308
The following BLAST results are available for this feature:
BLAST of TCONS_00050479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPTCS1.536e-3839.51Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3[more]
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