TCONS_00050488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050488
Unique NameTCONS_00050488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050488 ID=TCONS_00050488|Name=TCONS_00050488|organism=Clytia hemisphaerica|type=transcript|length=540bp
CAAGATGCCactatcattttttaaattttccagaGGGTTCAGAGGGTTTA
GAGGAATTGTCTCACCATCGAGGTTTATTGGTCTATTTGGTTCATGCTGT
TCATGTCAACAATCGATAAATTCTTGTAGGTTCTTTTGAAGTTCATTTGT
TCCATGTATGTTTAGGTGTAGTTTGCTGTTGTTGAGGTGTCTTACGGGGT
CAATATTGCTGTTATCGATGAAACCAATGTTGCACTCATTACAACGTTTC
TGTAGAGTTTCATTTAGTTTATCTACATTTCTATTCAATGCATCTCCCCT
TGGAACAATTCCAGATACTATGACACTATTTTCGCTCTCTTCACTCACCA
TTTTTGCCAACATAACAATATTTTAGGTAATCTCGTCTGGTTTTTTCGTT
TGTAGATCGTTTGTTCCACAGTGTATGATCATAGTATCAGGCTTTTTATC
GAGAGTTGGCCTAATATAATGCTTCATACAATCCACTCTTGCACCAGGAA
ATGTTTTTACAACTACCTTCTTGTTTTTGCTTGAAAGCTT
Run BLAST on NCBI

transcript from alignment at scaffold_174:950..1489

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050488 ID=TCONS_00050488|Name=TCONS_00050488|organism=Clytia hemisphaerica|type=transcript|length=540bp|location=Sequence derived from alignment at scaffold_174:950..1489 (Clytia hemisphaerica)
AAGCTTTCAAGCAAAAACAAGAAGGTAGTTGTAAAAACATTTCCTGGTGC
AAGAGTGGATTGTATGAAGCATTATATTAGGCCAACTCTCGATAAAAAGC
CTGATACTATGATCATACACTGTGGAACAAACGATCTACAAACGAAAAAA
CCAGACGAGATTACCTAAAATATTGTTATGTTGGCAAAAATGGTGAGTGA
AGAGAGCGAAAATAGTGTCATAGTATCTGGAATTGTTCCAAGGGGAGATG
CATTGAATAGAAATGTAGATAAACTAAATGAAACTCTACAGAAACGTTGT
AATGAGTGCAACATTGGTTTCATCGATAACAGCAATATTGACCCCGTAAG
ACACCTCAACAACAGCAAACTACACCTAAACATACATGGAACAAATGAAC
TTCAAAAGAACCTACAAGAATTTATCGATTGTTGACATGAACAGCATGAA
CCAAATAGACCAATAAACCTCGATGGTGAGACAATTCCTCTAAACCCTCT
GAACCCtctggaaaatttaaaaaatgatagtGGCATCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031971XLOC_031971Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050488-exon-scaffold_174-1491911889:950..1489TCONS_00050488-exon-scaffold_174-1491911889:950..1489Clytia hemisphaericaexon
TCONS_00050488-exon-scaffold_174-1510915933:950..1489TCONS_00050488-exon-scaffold_174-1510915933:950..1489Clytia hemisphaericaexon
TCONS_00050488-exon-scaffold_174-1575043694:950..1489TCONS_00050488-exon-scaffold_174-1575043694:950..1489Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_174supercontigscaffold_174:950..1489 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.107184	0.104521	0.606793	0.593653	1.44543	1.82752	1.10241	0.516032	0.270964	0.223755	0	0	0.427706	0.296118	0.304312	0.718461	0	0	0.797569	4.64991	0	0	0	0.111729	0.460313	0.102705	0	0	0	0.121207
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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