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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050491 ID=TCONS_00050491|Name=TCONS_00050491|organism=Clytia hemisphaerica|type=transcript|length=899bp
ggGAAATTTTATATAAGTAGGTAAGTGCTGCCATAAGAGCTCATTTTGCG
AAGATTTCATTTTGTGAGAATGgctaaaaattgctaaaaactaattactg
TTTAATTATTGTAAAATTAGACAGTCAGCACTAAAAAAAATTGTGGACTA
AGATTTTTGGACTTCAGCTTCAGGGACGCAAAGAGAACATGTTCTTGATG
GTCTCCTAAAGCCTCACTCTGAGGTCTTTTAGAAGAGACTATTGGGTGGT
TATTGCAATTAGATATCCCAAGTAGATCTACATGTTCCTGTTTAGAATAT
TGACCCTGTTATACAGGTTGACTTTTCAAGGTGTCGTTTttaaacataaa
tattttttgaatacttAGAGAGCAGAGGATTCAGGAGGACCAAGGAAAGA
TTTCTTCAATCAAATGGTCCGGGAAATCAAAGAGGAATTCTTTGATTAGG
AAGCATTGCCAATCAACAAATACTATAATGCTGGCACAGTTATGGGTTTA
AGTATGTTACAGAATGGTCCTTTCCCTCGTTTTTTGAAAGAAGATGAAAT
TAAGGAAatattcacaaaagaaaaacCAGAACTTAAATACTTGCACATAA
GACAAGCATTTAAAGATCTTGGAATTTTACAGgTTTTCCAACATTTTCCG
ATGATGCTTCATCTTTTAAGACCATCGCCACAATACAATCTAACATTCCG
GAAAGTAGTCGAACTTCTTCAACCTCTCTGGGAAGAAGAAGGTTCAAATG
CAAAAATGCGACAGAAGAAATTGTATGCAATTTTCCTCAAATATTTGAGG
CTGGTGCATGGTAAgttttctattttcaacattactCTTCGCTATGTTGT
TAATGTTGAGCAATAAATAATGGAATGTGGTCTGTGACTGAAAAATTTN Run BLAST on NCBI transcript from alignment at scaffold_175:1387..11605+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050491 ID=TCONS_00050491|Name=TCONS_00050491|organism=Clytia hemisphaerica|type=transcript|length=10219bp|location=Sequence derived from alignment at scaffold_175:1387..11605+ (Clytia hemisphaerica)
ggGAAATTTTATATAAGTAGGTAAGTGCTGCCATAAGAGCTCATTTTGCG
AAGATTTCATTTTGTGAGAATGgctaaaaattgctaaaaactaattactg
TTTAATTATTGTAAAATTAGACAGTCAGCACTAAAAAAAATTGTGGACTA
AGATTTTTGGACTTCAGCTTCAGGGACGCAAAGAGAACATGTTCTTGATG
GTCTCCTAAAGCCTCACTCTGAGGTCTTTTAGAAGAGACTATTGGGTGGT
TATTGCAATTAGATATCCCAAGTAGATCTACATGTTCCTGTTTAGAATAT
TGACCCTGTTATACAGGTTGACTTTTCAAGGTGTCGTTTttaaacataaa
tattttttgaatacttAGAGAGCAGAGGATTCAGGAGGACCAAGGAAAGA
TTTCTTCAATCAAATGGTCCGGGAAATCAAAGAGGAATTCTTTGATTAGG
AAGCATTGCCAATCAACAAATACTATAATGCTGGCACAGTTATGGGTAAG
CTCAAATACACTAATTACAATAGAGAATATTTCGGCCATAACTTAAGTAA
GACTATAGAGGTTCATGtattgtttttgtcaatttctaTATTTTGTAATT
TGGAAACTTGGAAAACTAAGAACATACTGCTCAATAGCCCTAATTATAAT
CACCTAATTTATAACATCTTTATATTTGATTTAGGTTTAAGTATGTTACA
GAATGGTCCTTTCCCTCGTTTTTTGAAAGAAGATGAAATTAAGGAAatat
tcacaaaagaaaaacCAGAACTTAAATACTTGCACATAAGACAAGCATTT
AAAGATCTTGGAATTTTACAGGTACTTTTTTTCCATATTCTAATTGGTTT
ATAAAATTGTTGGCTTTAGGTCTACTTCTCTTTGTTTGCTTTgtgaaaaa
taatcaaagaatgcacctcgggtaagttatggcatgtcccaaaaaatgaa
aattaccataatttttagatcgcattagtcgacagaaaattaCCAAACAA
ATGaatgaacatgaagggtactatgatgtagtttctaacctgatgtgtaa
cctaattgtttgttcgctgattttcgcgaaaaaccgtaaaaactgattat
gacgtcataatcgatgacgtcataaaaactaaaaattaaatttctcaaga
atggtttatccaattNtaacctaattgttttttcgctaattttcgcgaaa
aaccgcaaaaactgattattgcgtcataatcgatgacgtcatcaaaactg
aaaattgaatttctcaagaatggttcaTCAAATTGTcctcaaattttcac
caaagatgcatctcaCTAAAgtcaaacatttgaaaaaatatttttttgaa
aattctgattAGGTCAGcaaaaagtagaatttttctttttttactaattt
ctgctgacgtcatcaacatttcgaaaatgtttttttctaaaagatcGACT
TTggtgagatacatctttggtaaaagtttgaagacaattggataaaccat
tcttgagaaatacaatttttagttttgatgacgtcatcgtcatCCTAAGG
TCCTCTccctcaaaaaaatattttgattttgtttgtttctcCCTAGCAAC
ATTCGAAtgttcaaaacattcgaataacaCTGCAATGACCTCAGTAACTT
TTAGTGTGCACACAGTTGCATTAAGTGTTgacgaaaaatttaaattgact
gttaatatttcccttttttaaagtcaatgtTTTGTATTGACTGTCAATAT
AAGTAATGAACagtcaatgtaaaaaattgacTGTTAATATTGACGGTCAA
TATATTCTattagttttcaagaaaattgattgacagtcaatgtaaaatat
tttttggcaaTAATTTGCATTCGACAGTCAATAAAACTTCCTGACAGTCA
ATAcaaaacattgaacatgggcctaatcaatgttttttgacctagtaggg
ggggcgtacgatctggcggtactcgggataaggcctaatttagggccggg
aagcagtaaaaacgataaaaagtgttggggaaacggtattttgcaagatt
cacggtgacggtaaaacacctgattttttgtccgggatgaggtaattgtt
ataaaaaacaacggtatttcggtaatagtcatataaaaaaagcttgtcac
AGGAGGAGTCggcaaaaaggtaaaaaaaacgcgaaaaactcCCAAAGAAA
TAAGGATCTTACACCATTTCATAAAAAACCCTTATTTGAAACGTTCAAAG
TCGAAAAGGTAGTTGGTATCCACCTCCTGAAGGCAGTTTCAATTTCAACA
TGCTTTTTCCCATTCTTCCAAAAATGATGCCCTCGTTTCTATCGATAAAA
AAGACGAAAATCGTTTGCAAACTTGGGCTAATAGTTACACGAGAGCTGTA
CGTCAGAGAGCTGTACGCCAAGAAACGACTATGGCGAAGATGGGAACTTT
GCCACATTATCTCTAGTCAAGCAAGATCGCAAGATCAGCGAAGTCATCGT
GTCTACCAAAGAGTATGGGACCCCAGATGAAACAAGCACATCTGACAATG
GCCAAAACGCCACAGGCGCATCTGACCAAGATGCAGAAACAATCGAACAA
CCCGACCAATTTGATGCTTcagatgacgatgatgatgatgaagaaaacGT
TGAAAGAATAGCTGAATCCAGAACCCACAACATCGAAAATTCTCTGGATG
AAGGATCGTATTTCCTTCTTGGATGGTCATCTAGGTTTGGTAGAGCAATC
AAGATAAACTCGAAACTCCTTTCATGAAACTgctattttttgaacatttt
taaacatttttaaaagcgtGCTTTAAGTTTAAAATGACATAACTCAATGA
ATAAtgattcaaattgaaaaaaggaCCTACCAAAGTTTTCGTTAGACCTC
CCTACACCACATTAAcataaaaaagtctttctaTTCTAAACATTTCCACC
TTGGCATAATCAAACGTACGTCcggacttttttctgggacacccggtgca
tttttttctttaggAAGGTAGAGTTTATCTCTGTAAATTTTCGCAATCGA
AACAAAATACCAAACTAGTGATCTACTTCATACACATCTTATTCCATTTT
gccgaatttttgacttttagtcctaagaattttatgggaaaaacagcggg
aaccggtattttcgaaaattttggacgagataacggtaattttcataaaa
ttggttgggatggcggtaattcaaaatttcgtacGTCCCCACCTAGAAGT
GATCGCTGCACACTTAATCTTTCATTTGCACATTTCTGCACACTGACTGC
ACACTTGCTACACAGTCAATTTTTCCTTAAGGGAAAGTATGTGTATGACC
TCGGATTTGTGCAAGATGATGTAAATCGTAAAGCCATTTTGATTGCAAAT
AAATACAAACGTCTTTTCTCACGTTACTCTGTTTGCCACCTGAAAATGAA
CGGAAAGATGGTGTTCGATGATAGTATGTCATGCTTTAATATCAACCAAC
AAAGACGGtaaattaaaatgtaaaaaagacatgctgaatggacctacctg
atgataaaagctagataataaggcaataaggagaaaaatgaaaacaatta
gtcagacgatatagcgttttgcgaaaatgcataacacattaaatttcatc
attgattgttgatgggggaagagggaaggggagtagggaaaatagaaata
gaaagttccggttgcaaaaatcagttttattgacaataattgaatcatgc
ttaatggtggccattgttatcaataatgtttttgtgtgaaaaaacaaaaa
aaatcactgaGCTTTTTTATTCGAATGTGGAACCATGGAGCTTCAAATGC
TTTCTTGAAGAAGCAAGTTGTCAAGTGTTTTTCCAGGTTTCCGGACTGTT
TTAAGAAGTATGGGAAAAACGTTGAagaatttttatatattttcaaattg
taaaattgttttgttttttttaaattattattatgTCTGAGGAATTAACA
TCGGAGTTATtcattttctacttttcttCTTCCCGTGCGGTCGTCCCgtc
gcggcacgccgaaccgggttctcgTCCAACTTCTGATTCTGTGTTAgaca
gtctttttttttttttttcaggttttgtgtgatttttttctatttttgtg
tgaGATGTTGTTTGCTAAAATGTTTGTTCACCTATAgtgtatttttctat
ttttttctatttggtggAGTTGCatgaggctttgaggcctattatTGCAA
CTATAGGCTCTTTCAATGAGCGcctgtcagcaccttggactgactaccca
attccctcATATGGCATGGGTTCACCTGGGCGAAGGTTAATTCACTTGCC
AAGTCAACCACTgcaagtgggaatcgaacctcagtcgcctgtgcagcaac
caaggtcaatggcCACTATACCACAGATAGATTGTATGGAAGTGtgtttg
tcaaaaatttttgcaattcattgtttctccaatattacttttcttctatt
aTCTTCatatcttcatttggattaggtttttctttcacctacCACTATTT
AAATCCACTtcgactttttgctaaatttccctctgtttcggaatgacttt
tagattaaaaattaaaaatattctcaacttttttcgttcttatcagtttg
agttatttgtaTATAAATACTTTTCCTTTTCTTGACAggagatattacat
atcttcactatatataaaagaaatgtaaaaaataaataaataaagtaaat
aaaCGACAAGTCCAATATTATTATTATCCTTTGAAGAACACATATtaaaa
caagtgaaaaaagctaattccattctaaagtctattcacgataagtgtgc
actcttttttcttttacctataacttttgaagaaattcgtcaatctttat
aaatttggtatcattggaaagatattagtgagtggaacaatttggaataa
aaaaatctttaaagaaattataaaaacgaagatgagaatgaagaagaaaa
aaatgaagatcttgtagagaagtgctataactttcattttcattggagag
attgtttgatcttaggaggtcatcactatgaaaagattttactaaaatat
ttattcaagataaagttatgatacaaagtttatAAGTGATTGagcccaaa
aaacagcagaaaacaggagAAAACAGCGTTTTCAGACGTCAATCAGCTTA
TAACTTTGTTTGATATCTTTTGACTgaatgattatttttgagaaattttt
tcacagtgatgacgttcgataatcaaggattcacttcagtgaaaatgata
gttatagcacttttcttcaagatcttcatttttttcttcttcattttcat
cttcatttttagaattttcttatcaatttttttattccaaatagttccac
tcactaatatctttccaatgataccaaatttataaagattgaagaattcc
ttcagaagttataggtaaatgaaaaaagagtgcacaattatcgtgaatag
actttaggagTCATCAGAAGAGGTTTCGAAGACCTTAAAACTTTCTTCAC
TCTGTACACAACCTTTGTCATCTCGAGTATGCCCAATCTGTATGGTCACC
AAAACTACGTAAGGACATCAACTTAATTGAGGTCGTTCAACGACGTGCCA
CTAGGATGGTCAGAAGGTTAAGTAATCTACCATACGAGCAGGGCCTACGA
AAACTTGACTTGCCTTCTCTCGAATTCAGAAGACACTTCGGAGACATGGT
TCAGATCTACAAACACTTGCACTTCTACGATAAGGACACCACAGTTGGAA
AGTTTATTCGCAGGGTGCGTCCATCTCGAACTCACGATTACGAACTGATA
CTTTGCAGACGATGGATTTAGAGGTGTCCAGACCAAGTCGTTTTACTATC
GATGTGTGACAGCATGGAACCAGCTACCAAAAGAGACTGTTAACGCTACT
AGCATCAAAGCGTTCAAAGAAGAACTAACCAAGGCATGGATGGTACATCC
ATTGCGCTACGAATCAAGATCTTTGTAATTGTAGACGATagatcggttta
gaggccctcgtgtgcctggactgtaaatattcacaaaaaaaaatacattt
tattgcaattttatttgtaaataagGAAAACTCCTGACAGCAGATTTATA
TAGGGGGAAAATTATGCTTCAATTGATAAGCAATGATACAAATTTAACCG
AATCTGCTGCAAATCTTTTCAATTCGTCATATCTACCAAAAGTCCTTTTA
AAAATGTCCTTCAGTTTATGAGGCTGAGCGCCTTGATTTTTCACTCTCTC
AATAATACTTTTAGCGGACTTAATGAATGGTTCAACTATTGAACTTGCGC
GGCCTATTCTCAAGATTTCTGCTACCAATGGTggaataaaagattttaaa
aggtATATTGCTGCATTTAAAAGGCATTCTcacaataaaaaaaggaaagc
tATCACGTTTGTCATACAAGGAAtgtaggaaaaaaagttttgcatAGGAg
ctttttcagtatttttgagTCAATCCTGAGTTGTTTTCCCACCCTACAAA
CTTTAATGCAAAAACAGTTTAATATTGAAGAAATTAGAAGGTTTTAATAA
CCTTTACATGTgacttatattttttaaaacaaaggGNCTGAGTTGTTTTC
CCACCCTACAAACTTTAATGCAAAAACAGTTTAATATTGAAGAAATTAGA
AGATTTTAATAACCTTTACTTGTGACTTACATTTTATGAAACAAAGGGAC
AGTAACTTTCAGCCAAGCTGCCTGCAGTAGGTCCATTCCTTTGCTTCACG
TGGGGTTGAAAGAACGTCCAAAAGTACATGGTCTGTTTTCTTCATGACAA
TTTCATCAGGAACAagctaaattatttttttaattgcttGAAATTCGAAT
AAGAGACCATTCTTCAAAATAGCTAATTTTTCCGTACCTCTTGTATGCCT
GCAGAGATTCGCTCGCACCGGTCTTAGAAACGGACTTTCGACCGCTCCAG
ACGTCGCTTCGAAGACTCAAGAAAGAGCCGCTAAAAGAGCTGCCTCAAGC
AGCCCTTTCAAAATAATATATGGCCGCTTAAAGACCGGGCTTttgtgtac
tccaaatcgcttggggagtcacatatatTCTTGTGTTTTCTTTGGAGGAC
TTTctatcttttaaataaaattcgAAATTGAAGTATACTAAAAGCTACGT
GGATACAATCATCTGGTATTTTCAAGTCTTTTGACGAGTCTTTGTTTTtg
tcaaataaatatttttaggttATTTGACTTTTGAAGCAAAAATGACTCAT
CTGATGGTTCAAACTTCTCATTGATTTGATTTagcttaaaattaaattaa
agttCAACTTGTATTATTTTTAGTGTAAAGACATATTGAGTGTGAATTAC
GAGATTGTCTCCACTAGGaaaattttcgctaaaatacaAATTCTTGGAAA
AGGAACAGAATTCACACCTTTTCATTTAAGAACCAGGTGTTCTTGCCAAT
GTATTCCACTTTCTCAATTATGAGGAACTTCCTTGATACGGAATATTGAT
TTTGAAGATAAAGAATAAATTCCTTCACATCGTCATTTTTGACTTTGCTC
CCGAATATTATTGCATAGTCAAAAGCTGATGTTAAGCAATTCTGTAGGTA
TTGGGCCGTAGTAAAAGCATTGAAGTCCAAAATAGTCCTGTTGATAATAT
GAGAAAATGCGTATTGTTTGCCCAAATTTTAATagcatatttcttttatt
ccaTTACCTTCTATATAAAGGTATACACTCAAGTTAAAGAATATCTTGGA
GTACATGTAAGACCTCTACTAATTAGTTCAACAAATATcttagctgggag
acccgtcttCTCTGTTcgtgtcattttgaaaaataacattTAGTTAAAAC
AAATAATAATGTAGAAATATcagagtagccgggtattttcgtagatgcca
aatctggttgcataattctattggctgttaaacaattgttgaaatcatgT
GAtattaatgttttgatttgaagtgCGCTATCCTGATTGGCTAACCTTCT
CGACAgttttttggcacgaaattcaaacaaattcaaactgggtaaAAATA
CCATACTGTCAATGAGTAGCTTTTGATGGGATTTTTGattatgtggtgta
agtttgaatagagagtatggatctccagactacaAAGATCTTACCTTGTT
TCTACTTTCAACTCTCTATTTTTGCCATTGCACATTAGAACTTATTTTGG
CTGGGTTTTTCTGCATAGCCAATTATCTTTAAAACTACAGGACAAAACAA
CTCAAAGCTTTTTTTCTCGTTTTACTTTATTAgcgttttattattttgaa
ttttgaattcagTGTTCATTCCTCTTCTCTTATCTAaaagaaattggaaa
tttttcaGTTGATaagcttttataaaaatcagggagcaaatgtttttaat
taaaaCCAGAGAAAAACTTAACCAAGGGCTATGAACATATGTTTGATAGG
TGGCCTCATGGTTCACAGACTTAAACTAAAAATCAttggaaaaaatcatc
aaaaaagatattatatataataataacaacgccattttttaatcataaag
aTAGTAAAATTTATGAGTTTTAGAGCAAACACAACAATTAGATTAAATCA
TCTTTGATTAGGAGTACACTCCTCATGTATAATTTTTaacaatcaaaatt
gaaatttgatgcTCATTGAAAACAAAACGAAAAGGTTCATCCCGTTCTAA
ACAGTCACTATGTTTTAAAAGATCGTTCTTCTGCTTTTCCATAATTTCCA
TATTGTCATAGAAGTCCATTAAAAAGTTGTAATAGATATGATGTGTTAAA
TTTTGAATACAGACAGATCGAttccttttcttatttttttattattaatt
atCTGACCTGTGGAGATATGAAAATTGCCTAAACTAAACACAACAACTGT
ATCTTGAGTAGTAGTCGAAATGGTGATCCTGTTTTACCTATTTGGATCAC
AAGATAAGCCTGAATCAAAGTCCCTTAGTCTGATGTCCGAAATAAAGATC
TTGTTTTGCCTAGCATAGATTTGAGAATAAATGGAGACAAGATAATTGAA
TGAAGTCGAAATTTATTCAAATGAAATGACGTTAAACTTAATGGTTTGCT
TTGGGGTAACATTGGGGATGTGCTGTGCTAATCAAAAAGGAGAACCATAA
TATCCAGTGCACTGTATGGGCTAAAGCAGCCACTAGGAAAGTAAGAAGGC
CCTAAGGTTACCGAAGGTAAGCCAACACGCCCAAAGTCACCCCAAAtgca
aaaacaacaacatagtAACAGCAATATAGTAAAAACAACGGatgaaagga
aaaaaagagagaaaactaAACACAATTATTGTTGATGGTAAAACATTACC
ATTTATCTGGGTCCCAAATAGTAGAGGTAAGTGTTAATGATGCAATGCGG
GTTTGAAAATGGTGTATATCATTGTCTGAAATTCTAAGATAACGTAAATA
ACAGTCGCTGGTCCAGCGTCCTAGTGAGCAGATCATTGAGTCAGAAGCAC
ACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCTCTGCACACTATGCTAACTTGCTGTCTTCTGCTAGTATGGATT
GTGCAACCAGATGCAACTTGTTGTGAGAATTAATGCAGTAAATAGTCTTG
GTTCAATTGTCTGTAATGGTTGATTGTGATTTTGTTGTGATCTgtatttt
ctttaatttgatcATTGCAGCTATAATAAGCCCTAATGAGACTTTGACTA
TATATCTTGTACTATATGCCATAAAAATATACTTATTGATTGCATGAAAA
CTTCTCATATCTCATATTTTTCATTCCATTGATtcttccaatcttgttcc
aggTTTTCCAACATTTTCCGATGATGCTTCATCTTTTAAGACCATCGCCA
CAATACAATCTAACATTCCGGAAAGTAGTCGAACTTCTTCAACCTCTCTG
GGAAGAAGAAGGTTCAAATGCAAAAATGCGACAGAAGAAATTGTATGCAA
TTTTCCTCAAATATTTGAGGCTGGTGCATGGTAAgttttctattttcaac
attactCTTCGCTATGTTGTTAATGTTGAGCAATAAATAATGGAATGTGG
TCTGTGACTGAAAAATTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050491-exon-scaffold_175-1491911889:1387..1881 | TCONS_00050491-exon-scaffold_175-1491911889:1387..1881 | Clytia hemisphaerica | exon |
| TCONS_00050491-exon-scaffold_175-1510915933:1387..1881 | TCONS_00050491-exon-scaffold_175-1510915933:1387..1881 | Clytia hemisphaerica | exon |
| TCONS_00050491-exon-scaffold_175-1575043694:1387..1881 | TCONS_00050491-exon-scaffold_175-1575043694:1387..1881 | Clytia hemisphaerica | exon |
| TCONS_00050491-exon-scaffold_175-1491911889:2071..2207 | TCONS_00050491-exon-scaffold_175-1491911889:2071..2207 | Clytia hemisphaerica | exon |
| TCONS_00050491-exon-scaffold_175-1510915933:2071..2207 | TCONS_00050491-exon-scaffold_175-1510915933:2071..2207 | Clytia hemisphaerica | exon |
| TCONS_00050491-exon-scaffold_175-1575043694:2071..2207 | TCONS_00050491-exon-scaffold_175-1575043694:2071..2207 | Clytia hemisphaerica | exon |
| TCONS_00050491-exon-scaffold_175-1491911889:11339..11605 | TCONS_00050491-exon-scaffold_175-1491911889:11339..11605 | Clytia hemisphaerica | exon |
| TCONS_00050491-exon-scaffold_175-1510915933:11339..11605 | TCONS_00050491-exon-scaffold_175-1510915933:11339..11605 | Clytia hemisphaerica | exon |
| TCONS_00050491-exon-scaffold_175-1575043694:11339..11605 | TCONS_00050491-exon-scaffold_175-1575043694:11339..11605 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_175 | supercontig | scaffold_175:1387..11605 + |
Blast
The following BLAST results are available for this feature:
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