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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050501 ID=TCONS_00050501|Name=TCONS_00050501|organism=Clytia hemisphaerica|type=transcript|length=903bp
GGTTGATGAAAGCAGGAAGCAAGCCAAACCAAGTCGTTGGAAGAAGACTG
AAGCATAAGACCTGATTTCTCCCCTAAGCCTTTGTCACAACGTTCGACAA
TGTGTTGATGTGAACATGGATAAAATCATTGTCATTGTTCGGCAATAAAT
TTTATATTGAGAGATGGTCCAATCAAAGTGTTGTAGGATGCTGTGATTTT
caatatcgattaaaaatcgacTTATGAATTTATCCCAGCCATTCAAATGA
TTGCTGCATACCAATTCTTATAGATATATAGTGGAAGCTGACTTTTGAAC
AATTATCAAATGAATTTGATGTAAACTTGGTTTTGCTTGTGCTTCATGTT
TTTATCCAAATTTCCTCTTTGGAATATATACAGTTTaccattatttttag
tttttcatttaatttgaaatcaatggaaATTAGATTATCTTGGCAAgagt
tttttatattatttattatttatttattagttttttagaTCCTCAAAATG
ATTCATCATTGTACTCTAAAGCTTTTAAAGAGTGCCCAGGCAAGattgac
aatgatttttttatttgcaaCCTTAGAgttttctaaacattttagaaaaa
aataacccTCAATATATAAAGTTAAAATCTGGTTTATGGTAGCTGAATTT
AATTTCTCAAGCTTTCTTCCTCGccatttttaattctttcaaattattat
ttgtGATTAGattaagttttttataagaatcgcaatactaaaatatttgc
aaacttttaaaaatcaagctgagcctcaaaatatttttcagctacAATTT
ATTTGTCTTCCATTTATAAAATAAACAAGGCTTAAAATTATTCTtcagct
tttgaaatttgaaattattagtTCTTGTTTCCTTCCTCTTTTTCTTACGT
TTG Run BLAST on NCBI transcript from alignment at scaffold_178:20025..22451- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050501 ID=TCONS_00050501|Name=TCONS_00050501|organism=Clytia hemisphaerica|type=transcript|length=2427bp|location=Sequence derived from alignment at scaffold_178:20025..22451- (Clytia hemisphaerica)
GGTTGATGAAAGCAGGAAGCAAGCCAAACCAAGTCGTTGGAAGAAGACTG
AAGCATAAGACCTGATTTCTCCCCTAAGCCTTTGTAAGTACCAAATTTAG
CTACTTTTCAGAGTTTAGCCACTTGAATATTAGAACTGAAAATGTCCTTT
TTGCCTTTGTTTTTTTGTCTTAGCTGGAATAATTTTTCTGAGACTCTTTC
ACATGCTTTTTTTGGCACTTTTTCAGCAGTCTGTCACTTTTTTCTTAGAG
ATGCCTCTGGCAATATCACATTAATGCCTTTTCAGGTAGTCAGAAAGTCT
GCCGTATACTATCTTCGCTTTCAGATTATCAAAGGCAAAAAATAGTTGAG
CTCCAGATCCTGGACTACTTTTCAGGGGACTGTGACTAGATATTTTCTTT
CTATGATTGTTGTTTCTAGTGAATGTATTGCAACAATAAATACTGTATTT
CTAAAATTCTAAAGAAACAGNCCTTAGACATGTTTTACGAGACTTTTGTA
AAGTTTATTCAAATTAAATAAATAGATATAGATATAGGTTCAATGGAAAC
TTGAATAGCCGTCCTTTATTGGGGGAGGGTTGTACTTTTACGGTGTGACG
GGATTGGCCCTTTTTAAGTATGGTATTACGTGATTTGACGAAAAAAAAGA
CAGGAAAACGGTATTTTAAAATTAGACGGTGATGGTATTTGGCCTTATTT
TTTGTCATTAGCCGGTATTTGAATTTATTTTTTTCAATTTTCGGGATTCC
GGGATTCAGCAAAAATTTTGATGTGAAAACGGTATTTCGAATCCCTACAA
ACCCCCCCCCTTTATTTGCACTTGATATGTTGCATTCAGGATGTGATTTT
CAGCAGTTTTCTAACATTTTTGTGGAAATTCCATGCAGTGAGTCCAATTG
AGGCTAAGAAGGGAACAACTAAACTAGGAACTAAACCTTGAAATTAAAAT
AATTTTTCCTTCCAACCTACCCATCTTCAAAATCTAGGGTTTGGGTATTG
ACAAACCAACCTTTTTAAGTCCAGCTTGGTCCATTTGTTATGAAAGGGTT
GTGCTCCATATATTTTTTTCAAGATTTACAGAATAGCACAAAGAAGTATG
AAATCTACGGTTATTGCATCAAATTGTCTCTTGAAAATTGTAATTAAAAC
AAATTAGCTAAACTAAAGTGAGAATGAAGTAAATTTTTGGTTGTTTTGTT
TTTTTCATAATGATAGAAATAATTTTTCTCTGATTACACAAAATGTTAGG
CATTTTAAATGGGATGGATAAAAGAATAAAAAAGTTTCAGCTTTAAATGC
TTTCAGCTTTTTTTACAGCTGCGATTAGATAATTCTTTAATTCAAGCTGG
TGTGTAAATATGCTTTACTCTTCCTCACCTCAGGTCACAACGTTCGACAA
TGTGTTGATGTGAACATGGATAAAATCATTGTCATTGTTCGGCAATAAAT
TTTATATTGTAAGTATGTATTTTTCTTCAAATTTCTTTTGTACGTATTCA
ACACAATTAAAATCAGAGAGCATTCCTAATTAGTTTAACTAATAAGAGCA
TTACAAACTGAATTATCAGGGAGATGCAAGCAACAACTTGACTGCTGGTA
TCATGTACCAAAATTGATAGTCTCTAAGATTTCTGGCAGACTTGATAAAT
TAAATGTTTTTGTATTTTCTTATTTTGTTCAGGAGAGATGGTCCAATCAA
AGTGTTGTAGGATGCTGTGATTTTCAATATCGATTAAAAATCGACTTATG
AATTTATCCCAGCCATTCAAATGATTGCTGCATACCAATTCTTATAGATA
TATAGTGGAAGCTGACTTTTGAACAATTATCAAATGAATTTGATGTAAAC
TTGGTTTTGCTTGTGCTTCATGTTTTTATCCAAATTTCCTCTTTGGAATA
TATACAGTTTACCATTATTTTTAGTTTTTCATTTAATTTGAAATCAATGG
AAATTAGATTATCTTGGCAAGAGTTTTTTATATTATTTATTATTTATTTA
TTAGTTTTTTAGATCCTCAAAATGATTCATCATTGTACTCTAAAGCTTTT
AAAGAGTGCCCAGGCAAGATTGACAATGATTTTTTTATTTGCAACCTTAG
AGTTTTCTAAACATTTTAGAAAAAAATAACCCTCAATATATAAAGTTAAA
ATCTGGTTTATGGTAGCTGAATTTAATTTCTCAAGCTTTCTTCCTCGCCA
TTTTTAATTCTTTCAAATTATTATTTGTGATTAGATTAAGTTTTTTATAA
GAATCGCAATACTAAAATATTTGCAAACTTTTAAAAATCAAGCTGAGCCT
CAAAATATTTTTCAGCTACAATTTATTTGTCTTCCATTTATAAAATAAAC
AAGGCTTAAAATTATTCTTCAGCTTTTGAAATTTGAAATTATTAGTTCTT
GTTTCCTTCCTCTTTTTCTTACGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050501-exon-scaffold_178-1575043694:22369..22451 | TCONS_00050501-exon-scaffold_178-1575043694:22369..22451 | Clytia hemisphaerica | exon |
| TCONS_00050501-exon-scaffold_178-1575043694:20994..21068 | TCONS_00050501-exon-scaffold_178-1575043694:20994..21068 | Clytia hemisphaerica | exon |
| TCONS_00050501-exon-scaffold_178-1575043694:20025..20769 | TCONS_00050501-exon-scaffold_178-1575043694:20025..20769 | Clytia hemisphaerica | exon |
| TCONS_00050501-exon-scaffold_178-1510915933:22369..22451 | TCONS_00050501-exon-scaffold_178-1510915933:22369..22451 | Clytia hemisphaerica | exon |
| TCONS_00050501-exon-scaffold_178-1510915933:20994..21068 | TCONS_00050501-exon-scaffold_178-1510915933:20994..21068 | Clytia hemisphaerica | exon |
| TCONS_00050501-exon-scaffold_178-1510915933:20025..20769 | TCONS_00050501-exon-scaffold_178-1510915933:20025..20769 | Clytia hemisphaerica | exon |
| TCONS_00050501-exon-scaffold_178-1491911889:22369..22451 | TCONS_00050501-exon-scaffold_178-1491911889:22369..22451 | Clytia hemisphaerica | exon |
| TCONS_00050501-exon-scaffold_178-1491911889:20994..21068 | TCONS_00050501-exon-scaffold_178-1491911889:20994..21068 | Clytia hemisphaerica | exon |
| TCONS_00050501-exon-scaffold_178-1491911889:20025..20769 | TCONS_00050501-exon-scaffold_178-1491911889:20025..20769 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_178 | supercontig | scaffold_178:20025..22451 - |
Blast
The following BLAST results are available for this feature:
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