TCONS_00050505 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050505
Unique NameTCONS_00050505
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050505 ID=TCONS_00050505|Name=TCONS_00050505|organism=Clytia hemisphaerica|type=transcript|length=523bp
NCGGTTAACTGAACATCCTTTTTCATCAGCCTTCTTAAAATTGCACTCAA
ATAAGCTGCATCAGACGAATTAAAGTTATTGAAGTCGAATCTAAAGTCGT
TTAAATAAATAAGATTGggttttgaatcacttttgatTTGATGACCACTT
TGACCACGAACATAAGAGAATgaagttgaaagttttttggaaACAGACCT
TGATTGAGCGTTTATGTCTGTTAacaatttttctggatcgtagAATGAGG
CAATGTTGGTTTTCCTTCGCACGCTTTGAATTGAAGGATGATTCGGGTTA
TCGTGGAGACTGACGTCATCCGTTGGTATCAGTTGCTTTTGTTCTTTCTG
TTTTTGAGGCTGTTCTAGAGGGACATCTTTGGAGGCTTTTCTTGTTTTAC
GAGCGGAGGGTGCGTACGGTCTGCGTAGAATTAGTGTTTTGTATTCCAAC
GGTACGTCTACGATTTCCTTTTCGATTTCTTCCTGAAAGATTTCAATCAT
CTGGTGAATATTTACCGCCATTC
Run BLAST on NCBI

protein sequence of TCONS_00050505-protein

>TCONS_00050505-protein ID=TCONS_00050505-protein|Name=TCONS_00050505-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MAVNIHQMIEIFQEEIEKEIVDVPLEYKTLILRRPYAPSARKTRKASKDV
PLEQPQKQKEQKQLIPTDDVSLHDNPNHPSIQSVRRKTNIASFYDPEKLL
TDINAQSRSVSKKLSTSFSYVRGQSGHQIKSDSKPNLIYLNDFRFDFNNF
NSSDAAYLSAILRRLMKKDVQLT
Run BLAST on NCBI

transcript from alignment at scaffold_178:5214..5736

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050505 ID=TCONS_00050505|Name=TCONS_00050505|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at scaffold_178:5214..5736 (Clytia hemisphaerica)
GAATGGCGGTAAATATTCACCAGATGATTGAAATCTTTCAGGAAGAAATC
GAAAAGGAAATCGTAGACGTACCGTTGGAATACAAAACACTAATTCTACG
CAGACCGTACGCACCCTCCGCTCGTAAAACAAGAAAAGCCTCCAAAGATG
TCCCTCTAGAACAGCCTCAAAAACAGAAAGAACAAAAGCAACTGATACCA
ACGGATGACGTCAGTCTCCACGATAACCCGAATCATCCTTCAATTCAAAG
CGTGCGAAGGAAAACCAACATTGCCTCATTctacgatccagaaaaattgt
TAACAGACATAAACGCTCAATCAAGGTCTGTttccaaaaaactttcaact
tcATTCTCTTATGTTCGTGGTCAAAGTGGTCATCAAatcaaaagtgattc
aaaaccCAATCTTATTTATTTAAACGACTTTAGATTCGACTTCAATAACT
TTAATTCGTCTGATGCAGCTTATTTGAGTGCAATTTTAAGAAGGCTGATG
AAAAAGGATGTTCAGTTAACCGN

Coding sequence (CDS) from alignment at scaffold_178:5214..5736

>TCONS_00050505 ID=TCONS_00050505|Name=TCONS_00050505|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_178:5214..5736 (Clytia hemisphaerica)
ATGGCGGTAAATATTCACCAGATGATTGAAATCTTTCAGGAAGAAATCGA
AAAGGAAATCGTAGACGTACCGTTGGAATACAAAACACTAATTCTACGCA
GACCGTACGCACCCTCCGCTCGTAAAACAAGAAAAGCCTCCAAAGATGTC
CCTCTAGAACAGCCTCAAAAACAGAAAGAACAAAAGCAACTGATACCAAC
GGATGACGTCAGTCTCCACGATAACCCGAATCATCCTTCAATTCAAAGCG
TGCGAAGGAAAACCAACATTGCCTCATTctacgatccagaaaaattgtTA
ACAGACATAAACGCTCAATCAAGGTCTGTttccaaaaaactttcaacttc
ATTCTCTTATGTTCGTGGTCAAAGTGGTCATCAAatcaaaagtgattcaa
aaccCAATCTTATTTATTTAAACGACTTTAGATTCGACTTCAATAACTTT
AATTCGTCTGATGCAGCTTATTTGAGTGCAATTTTAAGAAGGCTGATGAA
AAAGGATGTTCAGTTAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031984XLOC_031984Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050505-proteinTCONS_00050505-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050505-exon-scaffold_178-1491911889:5214..5736TCONS_00050505-exon-scaffold_178-1491911889:5214..5736Clytia hemisphaericaexon
TCONS_00050505-exon-scaffold_178-1510915933:5214..5736TCONS_00050505-exon-scaffold_178-1510915933:5214..5736Clytia hemisphaericaexon
TCONS_00050505-exon-scaffold_178-1575043694:5214..5736TCONS_00050505-exon-scaffold_178-1575043694:5214..5736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_178supercontigscaffold_178:5214..5736 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15186	0	0	0	4.37661	3.39202	2.87616	3.19198	1.28035	3.02727	4.66985	3.56282	12.7093	7.5067	11.9299	11.5998	8.51142	8.56694	12.4022	7.99219	5.58644	3.34193	4.14869	10.1387	10.1855	11.2833	8.13485	9.40849	34.9427	41.1727
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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