TCONS_00050506 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050506
Unique NameTCONS_00050506
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050506 ID=TCONS_00050506|Name=TCONS_00050506|organism=Clytia hemisphaerica|type=transcript|length=280bp
GTCTTCTGCAACCTCATCCTTGAAGCATGacctttgatgtgtttgtaCCC
TTCGTGTATCCTATTTGCTATTAAACATCGAGCTGTAAGTAAAGTGTTGT
CAACAAAGCCAAGACCAagaccaaaaccaaaacaaagctaagtgagcaac
tatcaaaagaaatctccCGATGGTCAACTTCCTGGTTGTTGTTGGGGTTT
CGATTATGTACTGCTTGCTCATTTTCTCCATAGCATTGTTCTTGAAACTG
ATAGAATTCCAGATAAAAAACCCAACGCTT
Run BLAST on NCBI

transcript from alignment at scaffold_178:77597..77876

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050506 ID=TCONS_00050506|Name=TCONS_00050506|organism=Clytia hemisphaerica|type=transcript|length=280bp|location=Sequence derived from alignment at scaffold_178:77597..77876 (Clytia hemisphaerica)
AAGCGTTGGGTTTTTTATCTGGAATTCTATCAGTTTCAAGAACAATGCTA
TGGAGAAAATGAGCAAGCAGTACATAATCGAAACCCCAACAACAACCAGG
AAGTTGACCATCGggagatttcttttgatagttgctcacttagctttgtt
ttggttttggtctTGGTCTTGGCTTTGTTGACAACACTTTACTTACAGCT
CGATGTTTAATAGCAAATAGGATACACGAAGGGtacaaacacatcaaagg
tCATGCTTCAAGGATGAGGTTGCAGAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031985XLOC_031985Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050506-exon-scaffold_178-1491911889:77597..77876TCONS_00050506-exon-scaffold_178-1491911889:77597..77876Clytia hemisphaericaexon
TCONS_00050506-exon-scaffold_178-1510915933:77597..77876TCONS_00050506-exon-scaffold_178-1510915933:77597..77876Clytia hemisphaericaexon
TCONS_00050506-exon-scaffold_178-1575043694:77597..77876TCONS_00050506-exon-scaffold_178-1575043694:77597..77876Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_178supercontigscaffold_178:77597..77876 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.4887	0.971441	0	0.500541	4.72022	5.43793	2.11778	6.07465	2.57848	3.71645	7.28583	3.54447	10.3707	5.78626	6.36603	6.8916	1.06659	5.33196	4.16182	12.202	5.22265	2.83882	6.52699	8.76355	2.38106	8.21704	2.12889	0.418646	0	5.79898
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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