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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050508 ID=TCONS_00050508|Name=TCONS_00050508|organism=Clytia hemisphaerica|type=transcript|length=1305bp
tcacaggaaaaaattaataGATCACAAGCTTTGTGAAATGTCGTTTCCAG
ATTTGGGAATAGGTGGGTTTCCCAAACTAATCACAAGGTTGGGATCCTGC
AACTCTTCACAAGGTTGTCAAATGCAATTTCACAAACTTTAAATCTGGAT
GCGGATATTCGGATACCCTGGTTGGGAATTTNGCTTGTGAGTTACAGTTT
CGCAatccaaaaatgacaaaaacctAACCGATTTATTTTTGTCCAGACCT
TTTGTTAGCCTAGATTGACGTTGGGAACCAGCAAAAACGGGTCCAGATGT
TACGTTTACCAAACTTTGTGAAACATCATTTCCCAATAAAATATTACGTT
TTCCCCCATATTNAGAACTTAGCTTATCCAAACTTGTCCTGAAATTATTT
GAATTAAGGAATGGTCGAAAATGGATCTAGATATTACTTTTCCCAAACTT
TGTAAAAAAGCACTTCCCAATGTAGAACTTAGCTTATCCAAACTTGTCCT
GAAACTGTTTGAATTAAGGAATGGTCGAAAGTGGATCTGGATTTAACTTT
TCCCAAACTTTGTAAAAAAGCACTTCCCAATGCAGAACTTAGCTTATCCA
AACTTGCCCTAAAACTGTTTAAATTAGGGAATGGTCGAAAATGGTTCTAG
ATTTTACTCTTCCCAAACTTTGTAAAAAAGCACTTCCCAATGTAGAACTT
AGCTTGTCCAAAATTGTCCTTAAACTGGCTAAATTAGGAAATGGTCGAAA
ATGGATCTGGGTTCTACTTTAAAGCACGTTTGAAATGCAATGTGAATATA
GGTTTCTTGCTTGTTTCTATAATGTCTGAAATACAATTATATTGAAGAac
gattttattaaaataaagtAACAAATACAGTACTTGAGCAATTTTAATAC
ATGTCCAGAAAATATATCCCAACCATTTACGTGTTTACATAGATTTAAAA
TTTCTAACGACATCCACAGAGAACCTTTAGGAAAAGATGAATCGATGAAT
AGCTCCTGTAGTTCAGTATCGTTTGATCGTTCAGCAACTGACATAACTTC
CATTCTCCAttgattttttacaattttcaagcACAGCTTTCTCTGTAAGT
CGGTGGTTTACTACGTCATCTCAGTCATCTTGTCGATTTTTACATTGTCT
TCAGTCAATAACATTAGCTAGTAATTTGATAATTAGCTAGTAATTTGTAT
AATTCTCATCAAGGGACTGAAAATATCGATACAaccaaatttctttttcc
aaCCAAGATACCAAGTCTTTCTTTGTTTCCATAATAGTAATTTGCTGAAT
TTTTT Run BLAST on NCBI transcript from alignment at scaffold_179:31392..32755+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050508 ID=TCONS_00050508|Name=TCONS_00050508|organism=Clytia hemisphaerica|type=transcript|length=1364bp|location=Sequence derived from alignment at scaffold_179:31392..32755+ (Clytia hemisphaerica)
tcacaggaaaaaattaataGATCACAAGCTTTGTGAAATGTCGTTTCCAG
ATTTGGGAATAGGTGGGTTTCCCAAACTAATCACAAGGTTGGGATCCTGC
AACTCTTCACAAGGTTGTCAAATGCAATTTCACAAACTTTAAATCTGGAT
GCGGATATTCGGATACCCTGGTTGGGAATTTNGCTTGTGAGTTACAGTTT
CGCAatccaaaaatgacaaaaacctAACCGATTTATTTTTGTCCAGACCT
TTTGTTAGCCTAGATTGACGTTGGGAACCAGCAAAAACGGGTCCAGATGT
TACGTTTACCAAACTTTGTGAAACATCATTTCCCAATAAAATATTACGTT
TTCCCCCATATTNAGAACTTAGCTTATCCAAACTTGTCCTGAAATTATTT
GAATTAAGGAATGGTCGAAAATGGATCTAGATATTACTTTTCCCAAACTT
TGTAAAAAAGCACTTCCCAATGTAGAACTTAGCTTATCCAAACTTGTCCT
GAAACTGTTTGAATTAAGGAATGGTCGAAAGTGGATCTGGATTTAACTTT
TCCCAAACTTTGTAAAAAAGCACTTCCCAATGCAGAACTTAGCTTATCCA
AACTTGCCCTAAAACTGTTTAAATTAGGGAATGGTCGAAAATGGTTCTAG
ATTTTACTCTTCCCAAACTTTGTAAAAAAGCACTTCCCAATGTAGAACTT
AGCTTGTCCAAAATTGTCCTTAAACTGGCTAAATTAGGAAATGGTCGAAA
ATGGATCTGGGTTCTACTTTAAAGCACGTTTGAAATGCAATGTGAATATA
GGTTTCTTGCTTGTTTCTATAATGTCTGAAATACAATTATATTGAAGAac
gattttattaaaataaagtAACAAATACAGTACTTGAGCAATTTTAATAC
ATGTCCAGAAAATATATCCCAACCATTTACGTGTTTACATAGATTTAAAA
TTTCTAACGACATCCACAGAGAACCTTTAGGAAAAGATGAATCGATGAAT
AGCTCCTGTAGTTCAGTATCGTTTGATCGTTCAGCAACTGACATAACTTC
CATTCTCCAttgattttttacaattttcaagcACAGCTTTCTCTGTAAGT
CGGTGGTTTACTACGTCATCTCAGTCATCTTGTCGATTTTTACATTGTCT
TCAGTCAATAACATTAGCTAGTAATTTGATAATTAGCTAGTANGATTTTT
ACATTGTCTTCAGTCAATAACATTAGCTAGTAATTTGATAATTAGCTAGT
AATTTGTATAATTCTCATCAAGGGACTGAAAATATCGATACAaccaaatt
tctttttccaaCCAAGATACCAAGTCTTTCTTTGTTTCCATAATAGTAAT
TTGCTGAATTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050508-exon-scaffold_179-1491911889:31392..32534 | TCONS_00050508-exon-scaffold_179-1491911889:31392..32534 | Clytia hemisphaerica | exon |
| TCONS_00050508-exon-scaffold_179-1510915933:31392..32534 | TCONS_00050508-exon-scaffold_179-1510915933:31392..32534 | Clytia hemisphaerica | exon |
| TCONS_00050508-exon-scaffold_179-1575043694:31392..32534 | TCONS_00050508-exon-scaffold_179-1575043694:31392..32534 | Clytia hemisphaerica | exon |
| TCONS_00050508-exon-scaffold_179-1491911889:32594..32755 | TCONS_00050508-exon-scaffold_179-1491911889:32594..32755 | Clytia hemisphaerica | exon |
| TCONS_00050508-exon-scaffold_179-1510915933:32594..32755 | TCONS_00050508-exon-scaffold_179-1510915933:32594..32755 | Clytia hemisphaerica | exon |
| TCONS_00050508-exon-scaffold_179-1575043694:32594..32755 | TCONS_00050508-exon-scaffold_179-1575043694:32594..32755 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:31392..32755 + |
Blast
The following BLAST results are available for this feature:
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