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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050511 ID=TCONS_00050511|Name=TCONS_00050511|organism=Clytia hemisphaerica|type=transcript|length=1133bp
tttttcgatttttgcgtgtcaaaacattcgaattcgaacaaaaacattcg
aaaattgaAATGTTCGAAAATATGAAATGGCGcgcttttcaaaacaaaaa
gaaacaaacattctatttgtaaatcaAAACAGAGATTGCGATCGTCAAAG
TCATCATGAGCAGTGACAAAAAAAACTCtaacaaaacaacaattttcGAC
GAAGATGTTGAATCTGTTACCACAGAAACAAAGGATGGTAGGAAGTCTAA
AAACCTTAGCTTGACCATCAAGCAGGGGGCTGCTGCAAAAAAGACCAAAG
TTCAAGTTTGGCTGGGAGACAGCTCTGAGAACACAGATGATGTGGGGATT
TCTTTGAAGCTTGAGAAACGAAACATGACATGTCCTGATATAAATACTAT
GCAAATACAACAACAAGACAAAGCTACACCTGCACCTCGTAATGTACACT
CGTTAAGTCTCCATCAAACGCAGAGCACTactcgaaaatcctttttgggc
gaattgaaaaatattttgacttttaataagAAGCAAGACGACTCACCGCT
TCAGGATGCACCCAGTGCTCATGTTACTGTCGAGAAGGAATTTGAAAAGG
AGAACAAGAAAGTTGCATTACAGAATCGCAGGAAACAAGTATTTCAAAAT
CCTGAGGAACCTGAAAATAATGACCTCTCGACATTTTCAACAGTTGGCGT
TACGATTAATAAATTGCAAGCGTCGTtaaagaaatggaaaatcaaGAAGA
ACACCGAGGAGGTCAGGGATACAATCGCTGTTAATGtacatcatcaaaag
atttTGGACGATTGGAATGATAAAATGCAAACAGAAATCCCTTTCCCACT
TCAAATTATCATGAAGGAGGAGGCATTGGAGATCACTACAAGAGTTCATC
ACATGTATAAATCTATGTTAGGTAGTAAGCATACGTTAACAAAAGAAGCA
GAACATCATAATGTTTTGATCATGCAGTCACTTTATGTACCGGATATCAA
ACCCAACAAAGACTGAGTAATTATATTGAACTCTCTTAAACGTCAATATT
CAAGACAAAGATGTCATCtagttttctcaaaaatttgaaatatttttgaa
acaattttataGCTATACCTAGCTATACCGGCT Run BLAST on NCBI protein sequence of TCONS_00050511-protein >TCONS_00050511-protein ID=TCONS_00050511-protein|Name=TCONS_00050511-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MSSDKKNSNKTTIFDEDVESVTTETKDGRKSKNLSLTIKQGAAAKKTKVQ
VWLGDSSENTDDVGISLKLEKRNMTCPDINTMQIQQQDKATPAPRNVHSL
SLHQTQSTTRKSFLGELKNILTFNKKQDDSPLQDAPSAHVTVEKEFEKEN
KKVALQNRRKQVFQNPEEPENNDLSTFSTVGVTINKLQASLKKWKIKKNT
EEVRDTIAVNVHHQKILDDWNDKMQTEIPFPLQIIMKEEALEITTRVHHM
YKSMLGSKHTLTKEAEHHNVLIMQSLYVPDIKPNKD Run BLAST on NCBI transcript from alignment at scaffold_179:156343..160951+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050511 ID=TCONS_00050511|Name=TCONS_00050511|organism=Clytia hemisphaerica|type=transcript|length=4609bp|location=Sequence derived from alignment at scaffold_179:156343..160951+ (Clytia hemisphaerica)
tttttcgatttttgcgtgtcaaaacattcgaattcgaacaaaaacattcg
aaaattgaAATGTTCGAAAATATGAAATGGCGcgcttttcaaaacaaaaa
gaaacaaacattctatttgtaaatcaAAACAGAGATTGCGATCGTCAAAG
TCATCATGAGCAGTGACAAAAAAAACTCtaacaaaacaacaattttcGAC
GAAGATGTTGAATCTGTTACCACAGAAACAAAGGATGGTAGGAAGTCTAA
AAACCTTAGCTTGACCATCAAGCAGGGGGCTGCTGCAAAAAAGACCAAAG
TTCAAGTTTGGCTGGGAGACAGCTCTGAGAACACAGATGATGTGGGGATT
TCTTTGAAGCTTGAGAAACGAAACATGACATGTCCTGATATAAATACTAT
GCAAATACAACAACAAGACAAAGCTACACCTGCACCTCGTAATGTACACT
CGTTAAGTCTCCATCAAACGCAGAGCACTactcgaaaatcctttttgggc
gaattgaaaaatattttgacttttaataagAAGCAAGACGACTCACCGCT
TCAGGATGCACCCAGTGCTCATGTTACTGTCGAGAAGGAATTTGAAAAGG
AGAACAAGAAAGTTGCATTACAGAATCGCAGGAAACAAGTATTTCAAAAT
CCTGAGGAACCTGAAAATAATGACCTCTCGACATTTTCAACAGTTGGCGT
TACGgtaatttattttcttgtttacttttttgctacaccttttttttcat
aagaacaatttataagaacaatattgCACCTGGAGTTACCCAATCTCAAG
CAATTTTTAGGGTCAAAATAGTAATTAtagggggggggcgtacgaggttt
tgaattaccgccatcccggccatttttttgaaaatcaccgttatcccgtc
caaatttttcgaaaataccggtcccgctgtttttcccataaaattCTAAG
GACTAGAAGTCAAAAATTCGGCAAAATGGAATATAATGTGTATGAGGTCG
Atcactatttttgtattttgtttcgattgcaaaatttcagccaaatcaga
caattttagaagtttctagtctgccccaaagtttagcctcgttttgaggc
taaaacttgtgaccacgcccaaagaaatcaaaactttgaaaaaattaaaa
aaaaaacacagattggaagaaattttgacgggaatttaatttggcggatg
gccaaaaaagttttttagagggaatttaatttggcggatgaacgaaaaac
taaatttggcgggaatttaatttggcgtttgctgaaaaacttatccttaa
aatggtgtaaaaacagcaaaaaaaaatgcaaaaacaccctaaaagagatc
atattttcaagaagtttaatttggcgggaatttaatttggcggatggcgg
aaaaaagaaattttggcgggaacttaatttggcggattctggccaaatcc
gccaaatccgccaaattttctttccgccaaaatttcttcttttaaggtaT
CTGTATGTAAAGTCGGAAGGGCTAGATCTGCGGCCtggatcaaaaagtga
agctcattcTTCTTTGTCTCATCCTTGTTTGGGCTTTGGTAtcatttcct
accaaagtcacctGACTAAAATcatgcaatttcactggtttgagagatgc
gaaatagcgtttgccgcctacttttctTGATCTCGCACTCCTAGAACAat
gaaaatgctagatcctatccatcacCTCGAAATTCAATCAGGTCACAAAA
TCgtgcttcattttttttgctggataaaggttaaagctgcaaatctagcc
ctttgggctatgataaatcattgaataaaagaaacacCCCAGGGatttac
ccaaggaacaagaaCAAGCGTGCAAAGTTTCAGCCGACAATTCGACCATT
TTTGTAGACTCCAGCCTACCCCAAAGTTTCGAGGTGACAGATAGGACAAG
CTGatcgaattcgaaaaaaaaacattcaaNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAATTCGAATCTTTGTCTGGTTTATCCTA
GGCTACGGTCATATCTCCTGCGCTCCGGACGTAAAACTTCTTCTCTTCGA
AGAGAAGCTCAAGTGGAACAAAagagatatgacgtagcctagtttCTCCA
CGAACAAAACGTTTTTCTAGCGTTTTCATAGGAAGCGGGCTTTATAAAGG
TATTTTATGAAATGTAagatccttattttttgggtgtttttcccgttttt
tcacctttgctgactcctgtgacaagcttttttatagccCGAAAATTTTA
TATACACCGTCTACGTATGGcttttaccgaaataccgttgttttttataa
gaattacctcatcccggacgaaaaatcaggtgttttatcGTCACCGTGGC
TCTTTCAAAATACCGCTTCCCGAACACTTTTCATCGTTTTTACCGCTTCC
CGGCCCTAAATTAGGCCTTATCCCGAATACCGCTggatcgtacgcccccc
acattATAGGGTAATAAcgtctaaaatacctcaattactctcgggtacct
aatagccgggggggttggaataagcagggggttggaaaaaatctcaaaat
ttaataagcgggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
cgtcactttttctattgtttaagtgacgtattgggttgaactttttgaaa
attctcagaagactctccagtgttgcatatcatCAATAACTTGTGGTGTA
GCtgtaaaaaagtccaaaatgtcGATTTAAAAAACTAGATATTCATTTGA
TTTTGAGCTTTGGCGTTTTTAAGAGCCTGCCTATACAgtgaagtctccat
aactcgatcaGGCCCGGGGAATCGAAATTTATCTGAGTTATGGAAAGTTT
GAGATTTGGAGACTGATTTACAAGGcgttgttaactgaagggacaagaaa
acttgttcgaattaaaaAGACATTCGAGTAAAAGAGGTTCGAGTGCTGGA
GACTCCAGtgtataaataaataagtaaaacAAAAGTTAGTTGGACGAATG
ACTTGTTTGTTTCGTACCCGGTTTCTTATAcacattctttttaaagaaac
acacttttaagaaacatgagacTCAGAActgtactagtaatctcatggtt
atgagggaaattcgggataaatttccctaggtcaagtttgaaattttttg
aaatttcacgagtgcaacgagggaaatttaaaacatttcaaaatttgacc
aatggtaatttatcccgaatttcacGAAACAAACATGGGATTGGAAGAAT
TTTTAACCATGAATTAGTATAATTAGTAGTATTTTTTTTAACCATGAatt
aaccatgagattacttaAGAAATATTGAGGCTGGTTGGCTTTACCTAGTT
TCTTAACAAAACAACGTGTACGCTAGTACCTGGATTTTTTTTGGTACaac
tgatttttcatttttacccGAATCTTTCAGATTAATAAATTGCAAGCGTC
GTtaaagaaatggaaaatcaaGAAGAACACCGAGGAGGTCAGGGATACAA
TCGCTGTTAATGtacatcatcaaaagatttTGGACGATTGGAATGATAAA
ATGCAAACAGAAATCCCTTTCCCACTTCAAATTATCATGAAGGAGGAGGC
ATTGGAGATCACTACAAGAGTTCATCACATGTATAAATCTATGTTAGGTA
GTAAGCATACGTTAACAAAAGAAGCAGAACATCATAATGTTTTGATCATG
CAGTCACTTTATGTACCGGATATCAAACCCAACAAAGACTGAGTAATTAT
ATTGAACTCTCTTAAACGTCAATATTCAAGACAAAGATGTCATCtagttt
tctcaaaaatttgaaatatttttgaaacaattttataGCTATACCTAGCT
ATACCGGCT Coding sequence (CDS) from alignment at scaffold_179:156343..160951+ >TCONS_00050511 ID=TCONS_00050511|Name=TCONS_00050511|organism=Clytia hemisphaerica|type=CDS|length=1722bp|location=Sequence derived from alignment at scaffold_179:156343..160951+ (Clytia hemisphaerica)
ATGAGCAGTGACAAAAAAAACTCtaacaaaacaacaattttcGACGAAGA
TGTTGAATCTGTTACCACAGAAACAAAGGATGGTAGGAAGTCTAAAAACC
TTAGCTTGACCATCAAGCAGGGGGCTGCTGCAAAAAAGACCAAAGTTCAA
GTTTGGCTGGGAGACAGCTCTGAGAACACAGATGATGTGGGGATTTCTTT
GAAGCTTGAGAAACGAAACATGACATGTCCTGATATAAATACTATGCAAA
TACAACAACAAGACAAAGCTACACCTGCACCTCGTAATGTACACTCGTTA
AGTCTCCATCAAACGCAGAGCACTactcgaaaatcctttttgggcgaatt
gaaaaatattttgacttttaataagAAGCAAGACGACTCACCGCTTCAGG
ATGCACCCAGTGCTCATGTTACTGTCGAGAAGGAATTTGAAAAGGAGAAC
AAGAAAGTTGCATTACAGAATCGCAGGAAACAAGTATTTCAAAATCCTGA
GGAACCTGAAAATAATGACCTCTCGACATTTTCAACAGTTGGCGTTACGA
TTAATAAATTGCAAGCGTCGTtaaagaaatggaaaatcaaGAAGAACACC
GAGGAGGTCAGGGATACAATCGCTGTTAATGtacatcatcaaaagatttT
GGACGATTGGAATGATAAAATGCAAACAGAAATCCCTTTCCCACTTCAAA
TTATCATGAAGGAGGAGGCATTGGAGATCACTACAAGAGTTCATCACATG
TATAAATCTATGTTAGGTAGTAAGCATACGTTAACAAAAGAAGCAGAACA
TCATAATGTTTTGATCATGCAGTCACTTTATGTACCGGATATCAAACCCA
ACAAAGACTGAATGAGCAGTGACAAAAAAAACTCtaacaaaacaacaatt
ttcGACGAAGATGTTGAATCTGTTACCACAGAAACAAAGGATGGTAGGAA
GTCTAAAAACCTTAGCTTGACCATCAAGCAGGGGGCTGCTGCAAAAAAGA
CCAAAGTTCAAGTTTGGCTGGGAGACAGCTCTGAGAACACAGATGATGTG
GGGATTTCTTTGAAGCTTGAGAAACGAAACATGACATGTCCTGATATAAA
TACTATGCAAATACAACAACAAGACAAAGCTACACCTGCACCTCGTAATG
TACACTCGTTAAGTCTCCATCAAACGCAGAGCACTactcgaaaatccttt
ttgggcgaattgaaaaatattttgacttttaataagAAGCAAGACGACTC
ACCGCTTCAGGATGCACCCAGTGCTCATGTTACTGTCGAGAAGGAATTTG
AAAAGGAGAACAAGAAAGTTGCATTACAGAATCGCAGGAAACAAGTATTT
CAAAATCCTGAGGAACCTGAAAATAATGACCTCTCGACATTTTCAACAGT
TGGCGTTACGATTAATAAATTGCAAGCGTCGTtaaagaaatggaaaatca
aGAAGAACACCGAGGAGGTCAGGGATACAATCGCTGTTAATGtacatcat
caaaagatttTGGACGATTGGAATGATAAAATGCAAACAGAAATCCCTTT
CCCACTTCAAATTATCATGAAGGAGGAGGCATTGGAGATCACTACAAGAG
TTCATCACATGTATAAATCTATGTTAGGTAGTAAGCATACGTTAACAAAA
GAAGCAGAACATCATAATGTTTTGATCATGCAGTCACTTTATGTACCGGA
TATCAAACCCAACAAAGACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050511-exon-scaffold_179-1491911889:156343..157046 | TCONS_00050511-exon-scaffold_179-1491911889:156343..157046 | Clytia hemisphaerica | exon |
| TCONS_00050511-exon-scaffold_179-1510915933:156343..157046 | TCONS_00050511-exon-scaffold_179-1510915933:156343..157046 | Clytia hemisphaerica | exon |
| TCONS_00050511-exon-scaffold_179-1575043694:156343..157046 | TCONS_00050511-exon-scaffold_179-1575043694:156343..157046 | Clytia hemisphaerica | exon |
| TCONS_00050511-exon-scaffold_179-1491911889:160523..160951 | TCONS_00050511-exon-scaffold_179-1491911889:160523..160951 | Clytia hemisphaerica | exon |
| TCONS_00050511-exon-scaffold_179-1510915933:160523..160951 | TCONS_00050511-exon-scaffold_179-1510915933:160523..160951 | Clytia hemisphaerica | exon |
| TCONS_00050511-exon-scaffold_179-1575043694:160523..160951 | TCONS_00050511-exon-scaffold_179-1575043694:160523..160951 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:156343..160951 + |
Blast
The following BLAST results are available for this feature:
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