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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050513 ID=TCONS_00050513|Name=TCONS_00050513|organism=Clytia hemisphaerica|type=transcript|length=2806bpRun BLAST on NCBI protein sequence of TCONS_00050513-protein >TCONS_00050513-protein ID=TCONS_00050513-protein|Name=TCONS_00050513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=762bp MGVRRDFLLVFLLFGLVHSRGLQDDGIITKTAFISNIDSVNIATNHPKATRun BLAST on NCBI transcript from alignment at scaffold_179:161226..179662+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050513 ID=TCONS_00050513|Name=TCONS_00050513|organism=Clytia hemisphaerica|type=transcript|length=18437bp|location=Sequence derived from alignment at scaffold_179:161226..179662+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_179:161226..179662+ >TCONS_00050513 ID=TCONS_00050513|Name=TCONS_00050513|organism=Clytia hemisphaerica|type=CDS|length=38913bp|location=Sequence derived from alignment at scaffold_179:161226..179662+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050513 vs. Swiss-Prot (Human)
Match: ECE1 (Endothelin-converting enzyme 1 OS=Homo sapiens GN=ECE1 PE=1 SV=2) HSP 1 Score: 423.705 bits (1088), Expect = 7.886e-134 Identity = 240/689 (34.83%), Postives = 389/689 (56.46%), Query Frame = 3
Query: 459 VCDTQECRNVAKEIHLKMNETISPCDDFYEFACGRWINEKKIPSCENEITSFTVLTKTIENQIRKLIEQEPKKEESKALQKARDFYQSCNNTKEIERLGAKPALDFIDSIGGWSLCNKDKWKNEQSKKWNATEVLKKIQREFYPAPPFLSFEVTNDHLNSTKHLIKIDQSGLSL-QREIYCKHGKKKNILGDYKKYMTKVAQHLGYTCD-TVXXXXXXXXXXXXXXAKLTTPAEAK--QAGTFRRININILGKCISQFPWYEHIKAIFPKSANIKRDDVVLATSPQYLYNVASLITSVDKRLLSKYIVWQMLRDKISFLSQPFRDARAAFNKKMTGVEDT-EDRWRWCTSVTNDNMGVPIGTLYVNKYFSDETKNKTQVMVDEVIDAFIRRIKNNHTWIDNTTKEHVIAKANAMVAKLGHATYIKNITALNIRFKDLNISSKEFFKNNLNVDRWIRLRLFNKLRKTVDKSKWPMFPQTINAMYQFYENEIVIPAGILQAPFYYNGSIPMPLSYGAIGSIIGHEITHGFDNTGRKFDKNGDIKDEQWTQKSISNFCDKSHCLIKQYDKFKVRGKFPVHGKLTLGENIADNGGVKLAYYAYRDWADQQDQETAALPRPLKYDNDQLFFIGFAQQYCAKIREETEELATMSEIHSPSKFRVKGSLSNMKEFASTFKCPVGSPMNPVKKCEVW 2510
VC ++ C +V I M+ T+ PC DF+ +ACG WI +P + +F+ L + + I+ L+E S+A +KA+ +Y++C N IE L AKP ++ I+ +GGW++ W + N + L+ + Y PF S V+ D NS ++I++DQSGL L R+ Y + + +L Y YM ++ + LG + + ++ +IL+FE LA +T P E + + + ++ L W + IF I + ++ +YL +++LI + D+ LL+ Y++W ++R SFL Q F+DA F + M G + T RW++C S T +N+G +G ++V F++++K+ ++ E+ AF + + W+D T++ KA+A+ +G+ +I + L+ F D +F+N + + ++LRK ++ +W M P +NA Y +NEIV PAGILQAPFY S P L++G IG ++GHE+TH FD+ GR++DK+G+++ W S+ F ++ C+++QY + V G+ PV+G+ TLGENIADNGG+K AY AY++W + E +LP L N+QLFF+GFAQ +C+ E+ +++ HSPS+FRV GSLSN KEF+ F+CP GSPMNP KCEVW
Sbjct: 98 VCLSEACVSVTSSILSSMDPTVDPCHDFFSYACGGWIKANPVPDGHSRWGTFSNLWEHNQAIIKHLLENS-TASVSEAERKAQVYYRACMNETRIEELRAKPLMELIERLGGWNITGP--WAKD-----NFQDTLQVVTAH-YRTSPFFSVYVSADSKNSNSNVIQVDQSGLGLPSRDYYLNKTENEKVLTGYLNYMVQLGKLLGGGDEEAIRPQMQQILDFETALANITIPQEKRRDEELIYHKVTAAELQTLAPAINWLPFLNTIF-YPVEINESEPIVVYDKEYLEQISTLINTTDRCLLNNYMIWNLVRKTSSFLDQRFQDADEKFMEVMYGTKKTCLPRWKFCVSDTENNLGFALGPMFVKATFAEDSKSIATEIILEIKKAFEESL-STLKWMDEETRKSAKEKADAIYNMIGYPNFIMDPKELDKVFNDYTAVPDLYFENAMRFFNFSWRVTADQLRKAPNRDQWSMTPPMVNAYYSPTKNEIVFPAGILQAPFYTRSS-PKALNFGGIGVVVGHELTHAFDDQGREYDKDGNLR-PWWKNSSVEAFKRQTECMVEQYSNYSVNGE-PVNGRHTLGENIADNGGLKAAYRAYQNWVKKNGAE-HSLPT-LGLTNNQLFFLGFAQVWCSVRTPESSHEGLITDPHSPSRFRVIGSLSNSKEFSEHFRCPPGSPMNPPHKCEVW 770 The following BLAST results are available for this feature:
BLAST of TCONS_00050513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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