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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050514 ID=TCONS_00050514|Name=TCONS_00050514|organism=Clytia hemisphaerica|type=transcript|length=2136bp
TTATAGACCAAATAATTAAATCattcaaacaaaaataatattgaaattaC
ACAGTCGTATAGTCCGATTGAATCATGGCATCAGCGAACAACGAGCCAAG
CAGTTCATTGGGTATTGCAAACAAAGCCACCAATGTGGTCTTTCAAAAAG
GTCACGTGACACGCAAGAAACGTGGACAAGTGTTGGGTCAGTCACATGGT
TTTAGGGGATGTACTATTTGGTTTACAGGTTTATCGGGAGCTGGAAAGAC
AACTATCAGTTTCGCACTAGAAGAATATTTATGTTTAAGGGGAATTCCAA
CCTATGGTCTGGATGGGGATAACATGAGAACTGGTCTCAATAAAAATTTA
GGGTTTTCCCCTGAAGACCGTGAAGAAAATATCCGTCGTGTCGGGGAAGT
TGCTAAATTATTTGCCGACGCTGGTATAGTTTGTTTGTCCAGTTTTATTT
CACCTTACGAAAAAGATCGTTTGAAAGCACGTAAATTGCATGAAGAAGCT
GGCCTCCCGTTCTTCGAGTGCTACGTCGATACGCCGTTAAACGTATGCGA
GACGCGCGACGTGAAAGGTCTGTATAAGAAGGCCAGAGACGGCGTCATTA
AAGGATTTACCGGTATCGATTCACCGTATCAAGCACCGAGCAATCCAGAG
CTTGTTTTGAAAGCTGGccaacaaagcattgatgaatGCGTCCAAGAGAT
TGTGAAATTACTGGAGAAGAATCACATTGTACCTCTCACAGTCATCAACG
AAGTCCGTGAACTCTTTGTCAATGATGACGAGTTACACGAACAAAAAGTG
ATCGCTGAATCATTACCCAGTCTCCCTATCAATAAAGTTGACATGCAATG
GCTTCAGGTGTTAGCTGAAGGTTGGGCGTCACCCTTGGAAGGGTTTATGT
ATGAGCGCGAATATCTACAGACGCTTCATTTCAATTGTTTACAAGATTCA
GATAATATCAATCAATCAGTTCCCATTGTATTACCTGTCACTACTGAACT
AAAAGAATCACTGGAGAATAAAGGAGAAATCGCACTTGAATATGACGGTC
GTCGTGTAGCCATCCTCGGTGAAACAGAGTTCTTCCCACATCGTAAAGAG
GAGAGATGTTGTCGACAATTCGGTACACGAAGCGTGAAACAACCTcatat
tgaaatgattttaGCTGCAGGTGATTGGTGTGTTGGTGGCAAATTACGTG
TCTTAGGTAAAATTGAATGGAACGATGGTCTTGATGAATATCGATTGAAA
CCAAACCAACTTCGCAAGAAATTTGCTGAAATGAAGGCGGATGCTGTGTT
CGCTTTCCAATTACGTAATCCTGTGCACAACGGACACGCCCTTTTGATGC
GAGACACCAAACGGAACTTGGTTGAACGTGGTTACAAAAAACCGGTCTTA
CTTTTACATCCTTTGGGTGGTTGGACTAAAAATGATGACGTACCTTTGCC
AATTCGTATTAAGCAGCATTTGGCGGTCTTGAAAGAAGGTGTATTAGATC
CAGAGTCTACTGTCTTAGCTATCTTTCCGTCTCCAATGATGTATGCTGGC
CCAACAGAAGTCCAATGGCATTGCAAAGCACGAATTGCCGCAGGAGCTAC
ATTCTACATTGTTGGTCGTGATCCAGCCGGTATGGGACATCCTGACCAAC
CTGGGGATCTGTACGATGCCACACACGGACGTAAGGTCCTCACCATGGCT
CCTGGTCTCGTTCAGTTAGAGATTGTTCCTTTCAAAGTTGCTGCTTACAA
TAAAGTAAAACATCAAATGACATTTTTTGATCCAGAAAAGAAGGaagaat
ttgaatttatttctgGTACTAAGATGAGAGCTTTTGCCAGGAATGGTGAT
ACTCCACCAGATGGCTTCATGGCACCTACCGCTTGGAAAGTGTTAGCCGA
TTATTACCAATCAATCGTCAAGAATGATTAAATTTTGTTTACAATCAATT
TCTTCActtattttttacaatttcttgttcatgttttgtttttgtttttt
tcatttttatccattttataaattttttcagTTTGATGGCTAGATCTCTC
ATTTGGGTAGATGACGTCAAAGATAGGGATGTGCAATACTTCAGTCAGAT
ATATATTACTGCTGAAGGTAATATTATCTGGACAAG Run BLAST on NCBI transcript from alignment at scaffold_179:251486..255216+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050514 ID=TCONS_00050514|Name=TCONS_00050514|organism=Clytia hemisphaerica|type=transcript|length=3731bp|location=Sequence derived from alignment at scaffold_179:251486..255216+ (Clytia hemisphaerica)
TTATAGACCAAATAATTAAATCattcaaacaaaaataatattgaaattaC
ACAGTCGTATAGTCCGATTGAATCATGGCATCAGCGAACAACGAGCCAAG
CAGTTCATTGGGTATTGCAAACAAAGCCACCAATGTGGTCTTTCAAAAAG
GTCACGTGACACGCAAGAAACGTGGACAAGTGTTGGGTCAGTCACATGGT
TTTAGGGGATGTACTATTTGGTTTACAGGTAAACAGTGATAATTCattta
tatatacttttaatCCATCAATCCTTTTGGattattaaatttcaattttt
cccgACTTCGGTTCGATTTGAAAtgtaaattttataagaattagcCTTTG
TTTTCTGATATTTTCAAAGGTTGTAGTTGAACACATCATTACGATTAACA
CACCTATCTCACCGACTTGATTGAACTTTGCAATTAAACTAATCCAATTC
CAAATTATTCGATCTCAGGTTCCAATCTTCGTCTTTTTATTCTTTCTATT
AAACTATCTGTCTATAGGTTTATCGGGAGCTGGAAAGACAACTATCAGTT
TCGCACTAGAAGAATATTTATGTTTAAGGGGAATTCCAACCTATGGTCTG
GATGGGGATAACATGAGAACTGGTCTCAATAAAAATTTAGGGTTTTCCCC
TGAAGACCGTGAAGAAAATATCCGTCGTGTCGGGGAAGTTGCTAAATTAT
TTGCCGACGCTGGTATAGTTTGTTTGTCCAGTTTTATTTCACCTTACGAA
AAAGATCGTTTGAAAGCACGTAAATTGCATGAAGAAGCTGGCCTCCCGTT
CTTCGAGTGCTACGTCGATACGCCGTTAAACGTATGCGAGACGCGCGACG
TGAAAGGTCTGTATAAGAAGGCCAGAGACGGCGTCATTAAAGGATTTACC
GGTATCGATTCACCGTATCAAGCACCGAGCAATCCAGAGCTTGTTTTGAA
AGCTGGccaacaaagcattgatgaatGCGTCCAAGAGATTGTGAAATTAC
TGGAGAAGAATCACATTGTACCTCTCACAGTCATCAACGAAGTCCGTGAA
CTCTTTGTCAATGATGACGAGTTACACGAACAAAAAGTGATCGCTGAATC
ATTACCCAGTCTCCCTATCAATAAAGTTGACATGCAATGGCTTCAGGTGT
TAGCTGAAGGTTGGGCGTCACCCTTGGAAGGGTTTATGTATGAGCGCGAA
TATCTACAGACGCTTCATTTCAATTGTTTACAAGATTCAGATAATATCAA
TCAATCAGTTCCCATTGTATTACCTGTCACTACTGAACTAAAAGAATCAC
TGGAGAATAAAGGTAAGCTTTTGttttacaatgaagtgaatacagtcgct
ctcatgttgtcttcgGACAACagaagtttgctcgctgtttttaatgattt
ttcgaaatttcgacgtggaaaaaaagtcagttttttggaaataactttcg
aactactttttcaaactttatgtatgatagctcaaaattcaagttagagc
atcctttatacaataaaaaaagaatgaacaaaaaatgaaaatcctgaacc
tcacaatatctcgacaaacctgtatacttttttttggtgcacccggtaca
cGAAGCGAATGTGTCCAATAAACTTGAAACAAGGTTATGTTTCAGCTTTT
GGTCTTTGCGCAAGCTGAGCCGAATGGTTTTACTAGACAACTTACTGTTT
AAATGTTGTTTTCCTTCTAACAGGAGAAATCGCACTTGAATATGACGGTC
GTCGTGTAGCCATCCTCGGTGAAACAGAGTTCTTCCCACATCGTAAAGAG
GAGAGATGTTGTCGACAATTCGGTACACGAAGCGTGAAACAACCTcatat
tgaaatgattttaGCTGCAGGTGATTGGTGTGTTGGTGGCAAATTACGTG
TCTTAGGTAAGTTGATTGATTTGTGGTGATTTTTAACTGGTTCTTGAATT
TTAGTCGAATATAATTACTAGGCTTTAAAACTTCTGTCGTAGTGACTCGG
CGGAAATTATTTAGCCCATAATGATAAAATCAAAGAGCTACTGATGGGAA
ATCGCTTTTATCGTTTTTAATTAGTGGGAACTTTGCACTATATACTGTCT
TATTAGCTTCCCAAAATTACAATGCCCTCCCCAATTGGGATGAAATTTAA
GTGACCTTTCTAAGGGGATCACATTTTTCTTACCATTGACAATCTTTTGA
gccatttttccagtgggggtGTTTAGAACATGTGCTTTATAACCTCAATT
GGTTGTTTATGGAGCagtctttcttttcttcttcttttgtaCGTTAAAGT
AATATATATGAGAAATACAGAAAttttaatattgaaaaattttttatgtt
ttttctttagGTAAAATTGAATGGAACGATGGTCTTGATGAATATCGATT
GAAACCAAACCAACTTCGCAAGAAATTTGCTGAAATGAAGGCGGATGCTG
TGTTCGCTTTCCAATTACGTAATCCTGTGCACAACGGACACGCCCTTTTG
ATGCGAGACACCAAACGGAACTTGGTTGAACGTGGTTACAAAAAACCGGT
CTTACTTTTACATCCTTTGGGTGGTTGGACTAAAAATGATGACGTACCTT
TGCCAATTCGTATTAAGCAGCATTTGGCGGTCTTGAAAGAAGGTGTATTA
GATCCAGAGTCTACTGTCTTAGGTAGGTGGCCTCTTATTGTCAGCCAACT
GAGTTAAAGCTGCATGATtagatattttgatatttctccATCACAGCGTT
TATATACCCAAAGAATTTTGAAGAAATCTCAAGAGCTTCTAATGATTTCA
GTGGTGTggttatttgttttgtttttttcactcTAATGTGTAAAAAACTC
CAAAACTCTGTTTCATCGTTAATGCATGTCTCAGAGGTCTTTTAACCAGA
TTTCAATCTATTTAATCTTAACTTGTTACTTACCTGCTTACTTTCCCTTT
TATCTATAtccttataaaaagcgtgtacataTACTTCATAGTCATAGTGT
AATCTGTGATGTGATTAGTCTAAATTCGATCTTGGGAATTTACTCTGTAT
GGTTTTCTGCTGCCCAGAATTAATGACTAGTTTATTAAATCCTCTTTTAA
TTTCATATTTCAGCTATCTTTCCGTCTCCAATGATGTATGCTGGCCCAAC
AGAAGTCCAATGGCATTGCAAAGCACGAATTGCCGCAGGAGCTACATTCT
ACATTGTTGGTCGTGATCCAGCCGGTATGGGACATCCTGACCAACCTGGG
GATCTGTACGATGCCACACACGGACGTAAGGTCCTCACCATGGCTCCTGG
TCTCGTTCAGTTAGAGATTGTTCCTTTCAAAGTTGCTGCTTACAATAAAG
TAAAACATCAAATGACATTTTTTGATCCAGAAAAGAAGGaagaatttgaa
tttatttctgGTACTAAGATGAGAGCTTTTGCCAGGAATGGTGATACTCC
ACCAGATGGCTTCATGGCACCTACCGCTTGGAAAGTGTTAGCCGATTATT
ACCAATCAATCGTCAAGAATGATTAAATTTTGTTTACAATCAATTTCTTC
Acttattttttacaatttcttgttcatgttttgtttttgtttttttcatt
tttatccattttataaattttttcagTTTGATGGCTAGATCTCTCATTTG
GGTAGATGACGTCAAAGATAGGGATGTGCAATACTTCAGTCAGATATATA
TTACTGCTGAAGGTAATATTATCTGGACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050514-exon-scaffold_179-1491911889:251486..251713 | TCONS_00050514-exon-scaffold_179-1491911889:251486..251713 | Clytia hemisphaerica | exon |
| TCONS_00050514-exon-scaffold_179-1510915933:251486..251713 | TCONS_00050514-exon-scaffold_179-1510915933:251486..251713 | Clytia hemisphaerica | exon |
| TCONS_00050514-exon-scaffold_179-1575043694:251486..251713 | TCONS_00050514-exon-scaffold_179-1575043694:251486..251713 | Clytia hemisphaerica | exon |
| TCONS_00050514-exon-scaffold_179-1491911889:252003..252797 | TCONS_00050514-exon-scaffold_179-1491911889:252003..252797 | Clytia hemisphaerica | exon |
| TCONS_00050514-exon-scaffold_179-1510915933:252003..252797 | TCONS_00050514-exon-scaffold_179-1510915933:252003..252797 | Clytia hemisphaerica | exon |
| TCONS_00050514-exon-scaffold_179-1575043694:252003..252797 | TCONS_00050514-exon-scaffold_179-1575043694:252003..252797 | Clytia hemisphaerica | exon |
| TCONS_00050514-exon-scaffold_179-1491911889:253209..253391 | TCONS_00050514-exon-scaffold_179-1491911889:253209..253391 | Clytia hemisphaerica | exon |
| TCONS_00050514-exon-scaffold_179-1510915933:253209..253391 | TCONS_00050514-exon-scaffold_179-1510915933:253209..253391 | Clytia hemisphaerica | exon |
| TCONS_00050514-exon-scaffold_179-1575043694:253209..253391 | TCONS_00050514-exon-scaffold_179-1575043694:253209..253391 | Clytia hemisphaerica | exon |
| TCONS_00050514-exon-scaffold_179-1491911889:253846..254157 | TCONS_00050514-exon-scaffold_179-1491911889:253846..254157 | Clytia hemisphaerica | exon |
| TCONS_00050514-exon-scaffold_179-1510915933:253846..254157 | TCONS_00050514-exon-scaffold_179-1510915933:253846..254157 | Clytia hemisphaerica | exon |
| TCONS_00050514-exon-scaffold_179-1575043694:253846..254157 | TCONS_00050514-exon-scaffold_179-1575043694:253846..254157 | Clytia hemisphaerica | exon |
| TCONS_00050514-exon-scaffold_179-1491911889:254599..255216 | TCONS_00050514-exon-scaffold_179-1491911889:254599..255216 | Clytia hemisphaerica | exon |
| TCONS_00050514-exon-scaffold_179-1510915933:254599..255216 | TCONS_00050514-exon-scaffold_179-1510915933:254599..255216 | Clytia hemisphaerica | exon |
| TCONS_00050514-exon-scaffold_179-1575043694:254599..255216 | TCONS_00050514-exon-scaffold_179-1575043694:254599..255216 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:251486..255216 + |
Blast
BLAST of TCONS_00050514 vs. Swiss-Prot (Human)
Match: PAPS2 (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 OS=Homo sapiens GN=PAPSS2 PE=1 SV=2) HSP 1 Score: 849.351 bits (2193), Expect = 0.000e+0 Identity = 401/602 (66.61%), Postives = 487/602 (80.90%), Query Frame = 3
Query: 120 NKATNVVFQKGHVTRKKRGQVLGQSHGFRGCTIWFTGLSGAGKTTISFALEEYLCLRGIPTYGLDGDNMRTGLNKNLGFSPEDREENIRRVGEVAKLFADAGIVCLSSFISPYEKDRLKARKLHEEAGLPFFECYVDTPLNVCETRDVKGLYKKARDGVIKGFTGIDSPYQAPSNPELVLKAGQQSIDECVQEIVKLLEKNHIVPLTVINEVRELFVNDDELHEQKVIAESLPSLPINKVDMQWLQVLAEGWASPLEGFMYEREYLQTLHFNCLQDSDNINQSVPIVLPVTTELKESLENKGEIALEYDGRRVAILGETEFFPHRKEERCCRQFGTRSVKQPHIEMILAAGDWCVGGKLRVLGKIEWNDGLDEYRLKPNQLRKKFAEMKADAVFAFQLRNPVHNGHALLMRDTKRNLVERGYKKPVLLLHPLGGWTKNDDVPLPIRIKQHLAVLKEGVLDPESTVLAIFPSPMMYAGPTEVQWHCKARIAAGATFYIVGRDPAGMGHPDQPGDLYDATHGRKVLTMAPGLVQLEIVPFKVAAYNKVKHQMTXXXXXXXXXXXXISGTKMRAFARNGDTPPDGFMAPTAWKVLADYYQSIVKN 1925
K+TNVV+Q HV+R KRGQV+G GFRGCT+W TGLSGAGKTTISFALEEYL IP Y LDGDN+R GLN+NLGFSP DREENIRR+ EVAKLFADAG+VC++SFISP+ KDR ARK+HE AGLPFFE +VD PLN+CE+RDVKGLYK+AR G IKGFTGIDS Y+ P PE VLK ++ +CV ++V+LL++ +IVP T+I ++ ELFV +++L + AE+LPSL I K+D+QW+QVL+EGWA+PL+GFM E+EYLQ +HF+ L D IN S+PIVLPV+ E K LE + L + GRRVAIL + EF+ HRKEERC R +GT K PHI+M++ +GDW VGG L+VL KI WNDGLD+YRL P +L++K EM ADAVFAFQLRNPVHNGHALLM+DT+R L+ERGYK PVLLLHPLGGWTK+DDVPL R+KQH AVL+EGVLDP+ST++AIFPSPM+YAGPTEVQWHC++R+ AGA FYIVGRDPAGM HP+ DLY+ THG KVL+MAPGL +EI+PF+VAAYNK K M F+DP + EF+FISGT+MR AR G+ PPDGFMAP AWKVL DYY+S+ KN
Sbjct: 13 QKSTNVVYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENIRRIAEVAKLFADAGLVCITSFISPFAKDRENARKIHESAGLPFFEIFVDAPLNICESRDVKGLYKRARAGEIKGFTGIDSDYEKPETPERVLKTNLSTVSDCVHQVVELLQEQNIVPYTIIKDIHELFVPENKLDHVRAEAETLPSLSITKLDLQWVQVLSEGWATPLKGFMREKEYLQVMHFDTLLDDGVINMSIPIVLPVSAEDKTRLEGCSKFVLAHGGRRVAILRDAEFYEHRKEERCSRVWGTTCTKHPHIKMVMESGDWLVGGDLQVLEKIRWNDGLDQYRLTPLELKQKCKEMNADAVFAFQLRNPVHNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKDDDVPLDWRMKQHAAVLEEGVLDPKSTIVAIFPSPMLYAGPTEVQWHCRSRMIAGANFYIVGRDPAGMPHPETKKDLYEPTHGGKVLSMAPGLTSVEIIPFRVAAYNKAKKAMDFYDPARHNEFDFISGTRMRKLAREGENPPDGFMAPKAWKVLTDYYRSLEKN 614
The following BLAST results are available for this feature:
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