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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050517 ID=TCONS_00050517|Name=TCONS_00050517|organism=Clytia hemisphaerica|type=transcript|length=1292bpRun BLAST on NCBI protein sequence of TCONS_00050517-protein >TCONS_00050517-protein ID=TCONS_00050517-protein|Name=TCONS_00050517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp MAAIPKRTGHILNSLRKLMNSKQYVPETIHAYIVPSGDAHQSEYIAPRYKRun BLAST on NCBI transcript from alignment at scaffold_179:258492..331103+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050517 ID=TCONS_00050517|Name=TCONS_00050517|organism=Clytia hemisphaerica|type=transcript|length=72612bp|location=Sequence derived from alignment at scaffold_179:258492..331103+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_179:258492..331103+ >TCONS_00050517 ID=TCONS_00050517|Name=TCONS_00050517|organism=Clytia hemisphaerica|type=CDS|length=12060bp|location=Sequence derived from alignment at scaffold_179:258492..331103+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050517 vs. Swiss-Prot (Human)
Match: XPP1 (Xaa-Pro aminopeptidase 1 OS=Homo sapiens GN=XPNPEP1 PE=1 SV=3) HSP 1 Score: 307.375 bits (786), Expect = 4.528e-97 Identity = 163/334 (48.80%), Postives = 220/334 (65.87%), Query Frame = 3
Query: 87 PKRTGHILNSLRKLMNSKQYVPETIHAYIVPSGDAHQSEYIAPRYKRREFMSGFTGSAGTAIVTENEALLWTDGRYFLQAENQHDENWTLMKDGNPDVLKKEEWLSQKLPDGATVGVDPHLLSLDEWRRISKALKNSGKNLIRVDQNLVDLVWCDLGQPEVXXXXXXXXXXXXXGRSWEDKVNDVRERLKKKNAYGFVVASLDEVAWLFNLRGGDIVYNPVFMSYAIVTLDNISLFIDESRL-TNTIKDHLKL---TNENGMLKIFPYNGLQEELRKLG---QLEKKIWISSRNSCALASLVPEKY-LITDISPIASLKAVKNPVEIEGMRNAH 1064
PK T +L LR+ M + +YV E I AYI+PSGDAHQSEYIAP RR F+SGF GSAGTAI+TE A +WTDGRYFLQA Q D NWTLMK G D +E+WL LP+G+ VGVDP ++ D W++++K L+++G +LI V +NLVD +W D +PE P LL L L +G SW+DKV D+R ++ ++N FVV +LDE+AWLFNLRG D+ +NPVF SYAI+ L+ I LFID R+ ++K+HL L +++ PY + EL+ L +K+W+S + S A++ +P+ + +PI KAVKN E EGMR AH
Sbjct: 3 PKVTSELLRQLRQAMRNSEYVTEPIQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTAIITEEHAAMWTDGRYFLQAAKQMDSNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDPLIIPTDYWKKMAKVLRSAGHHLIPVKENLVDKIWTD--RPERPCKPLLTLGLDYTGISWKDKVADLRLKMAERNVMWFVVTALDEIAWLFNLRGSDVEHNPVFFSYAIIGLETIMLFIDGDRIDAPSVKEHLLLDLGLEAEYRIQVHPYKSILSELKALCADLSPREKVWVSDKASYAVSETIPKDHRCCMPYTPICIAKAVKNSAESEGMRRAH 334 The following BLAST results are available for this feature:
BLAST of TCONS_00050517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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