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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050518 ID=TCONS_00050518|Name=TCONS_00050518|organism=Clytia hemisphaerica|type=transcript|length=1045bpRun BLAST on NCBI transcript from alignment at scaffold_179:268460..294807+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050518 ID=TCONS_00050518|Name=TCONS_00050518|organism=Clytia hemisphaerica|type=transcript|length=26348bp|location=Sequence derived from alignment at scaffold_179:268460..294807+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00050518 vs. Swiss-Prot (Human)
Match: XPP1 (Xaa-Pro aminopeptidase 1 OS=Homo sapiens GN=XPNPEP1 PE=1 SV=3) HSP 1 Score: 306.99 bits (785), Expect = 3.040e-98 Identity = 164/343 (47.81%), Postives = 223/343 (65.01%), Query Frame = 2
Query: 41 PKRTGHILNSLRKLMNSKQYVPETIHAYIVPSGDAHQSEYIAPRYKRREFMSGFTGSAGTAIVTENEALLWTDGRYFLQAENQHDENWTLMKDGNPDVLKKEEWLSQKLPDGATVGVDPHLLSLDEWRRISKALKNSGKNLIRVDQNLVDLVWCDLGQPEVXXXXXXXXXXXXXGRSWEDKVNDVRERLKKKNAYGFVVASLDEVAWLFNLRGGDIVYNPVFMSYAIVTLDNISLFIDESRL-TNTIKDHLKL---TNENGMLKIFPYNGLQEELRKLG---QLEKKIWISSRNSCALASLVPEKY-LITDISPIASLKAVKNPVEIEGMRNAHRRLRFDCCQ 1045
PK T +L LR+ M + +YV E I AYI+PSGDAHQSEYIAP RR F+SGF GSAGTAI+TE A +WTDGRYFLQA Q D NWTLMK G D +E+WL LP+G+ VGVDP ++ D W++++K L+++G +LI V +NLVD +W D +PE P LL L L +G SW+DKV D+R ++ ++N FVV +LDE+AWLFNLRG D+ +NPVF SYAI+ L+ I LFID R+ ++K+HL L +++ PY + EL+ L +K+W+S + S A++ +P+ + +PI KAVKN E EGMR AH + C+
Sbjct: 3 PKVTSELLRQLRQAMRNSEYVTEPIQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTAIITEEHAAMWTDGRYFLQAAKQMDSNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDPLIIPTDYWKKMAKVLRSAGHHLIPVKENLVDKIWTD--RPERPCKPLLTLGLDYTGISWKDKVADLRLKMAERNVMWFVVTALDEIAWLFNLRGSDVEHNPVFFSYAIIGLETIMLFIDGDRIDAPSVKEHLLLDLGLEAEYRIQVHPYKSILSELKALCADLSPREKVWVSDKASYAVSETIPKDHRCCMPYTPICIAKAVKNSAESEGMRRAHIKDAVALCE 343 The following BLAST results are available for this feature:
BLAST of TCONS_00050518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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