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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050520 ID=TCONS_00050520|Name=TCONS_00050520|organism=Clytia hemisphaerica|type=transcript|length=715bp
TANCAGGATAGTATCACACTACAGGCTCAAGCAAGAGACTACCATATTGA
TCAACCACTTATTGTAGTAAATGAGTTTGATGACATAATTTATGAACAGT
GCAAAGAAATTTTGGATGGTATTACTGGTGATATCCCAGCATGTCTAGTT
AATGTTTTCCTGGATGAAGGAAAGAAATctTTGTTCAATAAAGCAAAGTA
TCCATGCAGAAGTCAAACGGAGGAGTCAAGTAATGCCCCTGATGGTTTTG
AAGCTACGCACAATGACGACATTgAGTCTTCCGAACCCTGTGATTTCTTT
ATGGACTCTTCAGTGTCGAATAACGGGATCTCACTGTCAAACACAGAAGG
TGCCAACTTATTGCCAGATCCTGAAATTAATGAGGACATTGTTGTTGATA
AGGAGTCTTCCAAACCTTGCGATTTCTATATGGGCCTTCCAGTGTTGAAT
AATGGGATTTCGCTGTCAAACGAGGAGATCACCAGCTTGTTGTTGAACCC
TGAAATTAATGGAGAATTGATCTGTGTTAAGGTATAGAAATACGTGATTT
ATGTTTTAGGGGGTTTCATGATTTTATCATGATTTGAAATTATCATTATA
GACAGGTACGAGCcaggaagtatcttatccatttggtggactaactttct
tggggtttttcttgttccttatggtaataagaatattttaagcttctggg
ccacctggatttctc Run BLAST on NCBI protein sequence of TCONS_00050520-protein >TCONS_00050520-protein ID=TCONS_00050520-protein|Name=TCONS_00050520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
XQDSITLQAQARDYHIDQPLIVVNEFDDIIYEQCKEILDGITGDIPACLV
NVFLDEGKKSLFNKAKYPCRSQTEESSNAPDGFEATHNDDIESSEPCDFF
MDSSVSNNGISLSNTEGANLLPDPEINEDIVVDKESSKPCDFYMGLPVLN
NGISLSNEEITSLLLNPEINGELICVKV Run BLAST on NCBI transcript from alignment at scaffold_179:352993..357389+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050520 ID=TCONS_00050520|Name=TCONS_00050520|organism=Clytia hemisphaerica|type=transcript|length=4397bp|location=Sequence derived from alignment at scaffold_179:352993..357389+ (Clytia hemisphaerica)
TANCAGGATAGTATCACACTACAGGCTCAAGCAAGAGACTACCATATTGA
TCAACCACTTATTGTAGTAAATGAGTTTGATGACATAATTTATGAACAGT
GCAAAGAAATTTTGGATGGTATTACTGGTGATATCCCAGCATGTCTAGTT
AATGTTTTCCTGGATGAAGGAAAGAAATctgtaagtattttttaattctt
aGATAAAAGTAAACAgggttttgaaaccacaatttTTGGGCAACATAATT
ACCACTTTTGCAGAACAAGTTGATTTTAGAGATATTTAGTCGCTAATTTC
ATAAGTCATtgtcattttcaatgaaaatcagTATTTAGCTTCTTCTATGT
GCAAAGTCATTTAGTCGTTAGTTGTTTAGTtctcttttatttcttttcca
ATTACttgttaaataaataaattattcttctttttcctgGTAGTTGTTCA
ATAAAGCAAAGTATCCATGCAGAAGTCAAACGGAGGAGTCAAGTAATGCC
CCTGATGGTTTTGAAGCTACGCACAATGACGACATTGTAAGTTGGAGGTG
TATAttataaaattagaaaatattgGTTTTGCTGTCCTCTAAGCAAAACT
ACTTGAAACTTGCTGAcccaattaaaaatcaatttttgttccAAGAGGCA
ATATCATACTGAAAAATTCCTGGATcaataaagcttttttcacatgtacg
taaaattttacttaaagtCTTAGGAAACCCCTTTCGTAGAGGAGCTTACG
AAGAGTTTTGCTCCTCCGGACCATGCTGATGGCCGCTGTTCACATGTACG
TTTGGTTACTTTGTGAAGGCATGTTTTCATTCGTAAAGCCCtctaaaaat
gacgtcatcgaaacaTTCGATTCAGTTTTCGAATCTTTTCACGTTCGAAA
TGTATcattcagttaggaacattttgcgagttcctgtacgtggcagcaat
caaaaaaatcaaagcgacactcataaaaaaattatgttcgtgtcattttt
attatttttttgcgtAGACAATACAgcaaatatattaaatattagCAAAC
TTTGCCTTTAATGGGCtgtaaaattattttgcaacggtagatttttttcc
aactaTCAACAATTGTGGAACAATcctatttaaacaaaattgaccagcgg
atttttatcttttcttcttcttcatcttcaataaAGCACTCGTACTCGAC
TGAAATTAAGCACATAAGTTATTCTTATAAGTATTGATGTTCACGGAAAG
CCTGTTTGCTGCGCGCTGCGATGGAGtacatgacgtaactcgcgcggcaa
atAACTCTCCTTCTGTTGGATGGCAGTATGGGCGTTTTTGGCGTCACCAC
CCTCGAAACAGCGGGCGCCTTTATTTTCCTGCGATTCTGTCCGCCATTTT
AAATGCAGTAAACACAATAGATTCAAAAGGGCGTGCTGAACGTGGAAAAT
CTTTGGTTTTGATCTCCTGTTTGGAAAGTTGCAATGTTTTCGATCGGAAA
GGATAAGAAACTTatgtttacaagtgtcatttaatTTTTGCTGGATGAGA
GCTTGGCAGGACTCTGGATGGTGATCTTAACTGTCATTTGAAcgtttttt
acttctttttttcttcttttttacatAAGCCGCTTACGAAAAATTGCTTG
TGatcgaaaattttttaaccTAAGCAAATTTTTCATTAGCCCTTGCATAG
ATTTTTGAGCCTTACGTGAATGCTTAAGTGGAGTTTTTTCTCGTTACATG
TACGAAGAATTTACGTAACGTAAGAGAATGAATGAACACCAATTTTTTgt
aaggtcttaagtaaaattttacgtgcatgtgaaaacaccttaaaaaagaa
attttccaacccAGTCAAGCAGTTGATTCATAACACTGCGACAGGTATCT
gtcattttggaaaattattttagtaATTATATTAGTGCTCAAAAAGGGGT
AAGCCACCCCATAAAACAGGTAATTTGTGGGGATTCTTCTAGATATATAT
AAGATTTCACTGTCCAGATATTGTTTTTgtatttagcaaaaatttcaaat
ttgttacgaatttttcaaaaaaggttttttggttCCTACACCACTTTTGT
CATAGTTCACATAGTAACAGCATGACCCCCCGACCATGCCACTGACCGAT
CCAACTCAGCCACTGACCAACTAAacccaaatttaaaaagttatacctca
aaatttaagttggacTGGACTGTCCTCTTTCCGATAAaagtatttgtttt
gtttttgtgaatgtTATattactcaaattttcttttttttacaggAGTCT
TCCGAACCCTGTGATTTCTTTATGGACTCTTCAGTGTCGAATAACGGGAT
CTCACTGTCAAACACAGAAGGTGCCAACTTATTGCCAGATCCTGAAATTA
ATGAGGACATTGTTGTTGATAAGGTATATCAAAatacattattttttgtt
tttgtataaaGCACaagtttcaacttttaaaataataagaaaaagatTTC
TCTCTGGTACTTAGTAATTGGGGGGTCTAGAATAAgcattttcattagac
ttttccTGATATTTCGCTGTTACACAAAAACATTCTttataacaatgccc
accatgaaccatggttcaattgtcaataaaactgacttTCTAAGCCAGAA
CtatctaaaaatcgccggaaaaGCCGATTTTGCtggaaaaacagtatttc
ttgaaattCTCGAGCTGtagtttacattttttttcatgaacgcTGATGCA
AAattccaaaataccaaaattgtgacgaagcctgattttcaaaaaaacat
ttttttacggccgaaaatgccggaaatcaccgtttctgcagattttcatt
ggatatttttctttattattactttgttttttcactcaaaaatgttttaa
ataacAATATCAACCACCTTTCATGGTTCAATTgttaataaaactgattt
ttgcagccgaaactttctaaaaatcacgGGAAGTGACCCTTTTAagagat
tttcatttgacttgtTTCCCCCGCTGTTTCCTTATATATTCTGGGTTTTT
TTCGGTTCCTGTATGTTTCTTattggcccagctagctttagcgtactggg
cctttcattagcattctgcccggtgtcagtgtgtaacaatttactaggcg
atacgcgttttcATATATGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
ACAGGCTAATTCAGATTGtgaaggatttgattggctgttagaacatgatt
gacagaataaaaaacaattgaaatcgtctttattggttaaaaacataaaa
agagaaaatacaattaattattaaaactataagaacataacagATGTAGt
gtgttttaagaaaaacaatgtaacaaaccgtaacaaaccttcttctcttt
aggaagatgttcttttaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNtaagatttaaatattatgaattatttcttattgttgtaaataag
agatagccgaatggtctaaggcgtctatggcttgtattagcgactccagg
ttcaaatccTCTCGGCTActcaagtcttgttcagttcatacttttatttg
ctgggccttcatgccctctgggcttcttgNGccgaaactttctaaaaatc
acgGAAAATGACCCtttttaaagagattttcatttgactGTTTCCCCCGC
TGTTTCCTTATATATTCTGGTTTTTTTTCGGTCCCTGTATGTTTCTTATT
TTACTTTTCATTTCCATTCTATATACATCATAAGCAATGTGCTTGTTGaa
tattgaataaatttttctcttttttttgtacTAGGAGTCTTCCAAACCTT
GCGATTTCTATATGGGCCTTCCAGTGTTGAATAATGGGATTTCGCTGTCA
AACGAGGAGATCACCAGCTTGTTGTTGAACCCTGAAATTAATGGAGAATT
GATCTGTGTTAAGGTATAGAAATACGTGATTTATGTTTTAGGGGGTTTCA
TGATTTTATCATGATTTGAAATTATCATTATAGACAGGTACGAGCcagga
agtatcttatccatttggtggactaactttcttggggtttttcttgttcc
ttatggtaataagaatattttaagcttctgggccacctggatttctc Coding sequence (CDS) from alignment at scaffold_179:352993..357389+ >TCONS_00050520 ID=TCONS_00050520|Name=TCONS_00050520|organism=Clytia hemisphaerica|type=CDS|length=2148bp|location=Sequence derived from alignment at scaffold_179:352993..357389+ (Clytia hemisphaerica)
TANCAGGATAGTATCACACTACAGGCTCAAGCAAGAGACTACCATATTGA
TCAACCACTTATTGTAGTAAATGAGTTTGATGACATAATTTATGAACAGT
GCAAAGAAATTTTGGATGGTATTACTGGTGATATCCCAGCATGTCTAGTT
AATGTTTTCCTGGATGAAGGAAAGAAATctTTGTTCAATAAAGCAAAGTA
TCCATGCAGAAGTCAAACGGAGGAGTCAAGTAATGCCCCTGATGGTTTTG
AAGCTACGCACAATGACGACATTgAGTCTTCCGAACCCTGTGATTTCTTT
ATGGACTCTTCAGTGTCGAATAACGGGATCTCACTGTCAAACACAGAAGG
TGCCAACTTATTGCCAGATCCTGAAATTAATGAGGACATTGTTGTTGATA
AGGAGTCTTCCAAACCTTGCGATTTCTATATGGGCCTTCCAGTGTTGAAT
AATGGGATTTCGCTGTCAAACGAGGAGATCACCAGCTTGTTGTTGAACCC
TGAAATTAATGGAGAATTGATCTGTGTTAAGGTATAGTANCAGGATAGTA
TCACACTACAGGCTCAAGCAAGAGACTACCATATTGATCAACCACTTATT
GTAGTAAATGAGTTTGATGACATAATTTATGAACAGTGCAAAGAAATTTT
GGATGGTATTACTGGTGATATCCCAGCATGTCTAGTTAATGTTTTCCTGG
ATGAAGGAAAGAAATctTTGTTCAATAAAGCAAAGTATCCATGCAGAAGT
CAAACGGAGGAGTCAAGTAATGCCCCTGATGGTTTTGAAGCTACGCACAA
TGACGACATTgAGTCTTCCGAACCCTGTGATTTCTTTATGGACTCTTCAG
TGTCGAATAACGGGATCTCACTGTCAAACACAGAAGGTGCCAACTTATTG
CCAGATCCTGAAATTAATGAGGACATTGTTGTTGATAAGGAGTCTTCCAA
ACCTTGCGATTTCTATATGGGCCTTCCAGTGTTGAATAATGGGATTTCGC
TGTCAAACGAGGAGATCACCAGCTTGTTGTTGAACCCTGAAATTAATGGA
GAATTGATCTGTGTTAAGGTATAGTANCAGGATAGTATCACACTACAGGC
TCAAGCAAGAGACTACCATATTGATCAACCACTTATTGTAGTAAATGAGT
TTGATGACATAATTTATGAACAGTGCAAAGAAATTTTGGATGGTATTACT
GGTGATATCCCAGCATGTCTAGTTAATGTTTTCCTGGATGAAGGAAAGAA
ATctTTGTTCAATAAAGCAAAGTATCCATGCAGAAGTCAAACGGAGGAGT
CAAGTAATGCCCCTGATGGTTTTGAAGCTACGCACAATGACGACATTgAG
TCTTCCGAACCCTGTGATTTCTTTATGGACTCTTCAGTGTCGAATAACGG
GATCTCACTGTCAAACACAGAAGGTGCCAACTTATTGCCAGATCCTGAAA
TTAATGAGGACATTGTTGTTGATAAGGAGTCTTCCAAACCTTGCGATTTC
TATATGGGCCTTCCAGTGTTGAATAATGGGATTTCGCTGTCAAACGAGGA
GATCACCAGCTTGTTGTTGAACCCTGAAATTAATGGAGAATTGATCTGTG
TTAAGGTATAGTANCAGGATAGTATCACACTACAGGCTCAAGCAAGAGAC
TACCATATTGATCAACCACTTATTGTAGTAAATGAGTTTGATGACATAAT
TTATGAACAGTGCAAAGAAATTTTGGATGGTATTACTGGTGATATCCCAG
CATGTCTAGTTAATGTTTTCCTGGATGAAGGAAAGAAATctTTGTTCAAT
AAAGCAAAGTATCCATGCAGAAGTCAAACGGAGGAGTCAAGTAATGCCCC
TGATGGTTTTGAAGCTACGCACAATGACGACATTgAGTCTTCCGAACCCT
GTGATTTCTTTATGGACTCTTCAGTGTCGAATAACGGGATCTCACTGTCA
AACACAGAAGGTGCCAACTTATTGCCAGATCCTGAAATTAATGAGGACAT
TGTTGTTGATAAGGAGTCTTCCAAACCTTGCGATTTCTATATGGGCCTTC
CAGTGTTGAATAATGGGATTTCGCTGTCAAACGAGGAGATCACCAGCTTG
TTGTTGAACCCTGAAATTAATGGAGAATTGATCTGTGTTAAGGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050520-exon-scaffold_179-1491911889:352993..353172 | TCONS_00050520-exon-scaffold_179-1491911889:352993..353172 | Clytia hemisphaerica | exon |
| TCONS_00050520-exon-scaffold_179-1510915933:352993..353172 | TCONS_00050520-exon-scaffold_179-1510915933:352993..353172 | Clytia hemisphaerica | exon |
| TCONS_00050520-exon-scaffold_179-1575043694:352993..353172 | TCONS_00050520-exon-scaffold_179-1575043694:352993..353172 | Clytia hemisphaerica | exon |
| TCONS_00050520-exon-scaffold_179-1491911889:353436..353528 | TCONS_00050520-exon-scaffold_179-1491911889:353436..353528 | Clytia hemisphaerica | exon |
| TCONS_00050520-exon-scaffold_179-1510915933:353436..353528 | TCONS_00050520-exon-scaffold_179-1510915933:353436..353528 | Clytia hemisphaerica | exon |
| TCONS_00050520-exon-scaffold_179-1575043694:353436..353528 | TCONS_00050520-exon-scaffold_179-1575043694:353436..353528 | Clytia hemisphaerica | exon |
| TCONS_00050520-exon-scaffold_179-1491911889:355287..355415 | TCONS_00050520-exon-scaffold_179-1491911889:355287..355415 | Clytia hemisphaerica | exon |
| TCONS_00050520-exon-scaffold_179-1510915933:355287..355415 | TCONS_00050520-exon-scaffold_179-1510915933:355287..355415 | Clytia hemisphaerica | exon |
| TCONS_00050520-exon-scaffold_179-1575043694:355287..355415 | TCONS_00050520-exon-scaffold_179-1575043694:355287..355415 | Clytia hemisphaerica | exon |
| TCONS_00050520-exon-scaffold_179-1491911889:357077..357389 | TCONS_00050520-exon-scaffold_179-1491911889:357077..357389 | Clytia hemisphaerica | exon |
| TCONS_00050520-exon-scaffold_179-1510915933:357077..357389 | TCONS_00050520-exon-scaffold_179-1510915933:357077..357389 | Clytia hemisphaerica | exon |
| TCONS_00050520-exon-scaffold_179-1575043694:357077..357389 | TCONS_00050520-exon-scaffold_179-1575043694:357077..357389 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:352993..357389 + |
Blast
The following BLAST results are available for this feature:
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