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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050522 ID=TCONS_00050522|Name=TCONS_00050522|organism=Clytia hemisphaerica|type=transcript|length=1912bpRun BLAST on NCBI protein sequence of TCONS_00050522-protein >TCONS_00050522-protein ID=TCONS_00050522-protein|Name=TCONS_00050522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp CGTANCQIDGGWSSWSWGACDAPCGPGTQIEERSCTNPSVSNGGLSCCGSRun BLAST on NCBI transcript from alignment at scaffold_179:374247..471289+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050522 ID=TCONS_00050522|Name=TCONS_00050522|organism=Clytia hemisphaerica|type=transcript|length=97043bp|location=Sequence derived from alignment at scaffold_179:374247..471289+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_179:374247..471289+ >TCONS_00050522 ID=TCONS_00050522|Name=TCONS_00050522|organism=Clytia hemisphaerica|type=CDS|length=15450bp|location=Sequence derived from alignment at scaffold_179:374247..471289+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00050522 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 245.743 bits (626), Expect = 3.551e-68 Identity = 159/346 (45.95%), Postives = 208/346 (60.12%), Query Frame = 3
Query: 18 CQIDGGWSSWS-WGACDAPCGPGTQIEERSCTNPSVSNGGLSCCGSATGNTQSCEVVPCPVNXXXXXXXXXXXCSDPCGTGSQERSRTCTNPTPAHGGDPCAGDTSESQDCNTNPCPVNXXXXXXXXXXXXXXXXXXXSQERSRTCTNPTPAHGGDPCAGDTSESQDCNTDPCPVNXXXXXXXXXXXXXXXXXXXSQERSRTCTNPTPAHGGDPCAGDTSEPQDCNTNPCPIHGVWTSWGSWETCSLTCGTGSQNRTRTCTDPAPQHGGDNCAGDASEPQDCNTNPCPVNGNWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCNGTHTNETQMCNFNYCP 1052
Q+ GG+S WS W AC CG G Q R C P +NGG C GS ++C+ PCPV+G W+ W W C+ CG G+Q R+RTC NP+ HGG PC G+ E CN PCPV+G W+AW WG C+ +CG G+Q R+R C NP PA GG C G ++ Q CN CP++G W W +W AC+ +CG G+++R+R C++P P +GG C G + CN++PCP HG W+ W W TCS TC G R RTC +P P +GG C G S+ Q CNT+ CPV+G+WG W +W++C CG G + R R+CD P P GG C G T T+ CN CP
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDL-EMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTR-CNVQACP 4869 HSP 2 Score: 193.741 bits (491), Expect = 4.011e-51 Identity = 142/326 (43.56%), Postives = 184/326 (56.44%), Query Frame = 3
Query: 3 CGTANCQIDGGWSSWS-WGACDAPCGPGTQIEERSCTNPSVSNGGLSCCGSATGNTQSCEVVPCPVNXXXXXXXXXXXCSDPCGTGSQERSRTCTNPTPAHGGDPCAGDTSESQDCNTNPCPVNXXXXXXXXXXXXXXXXXXXSQERSRTCTNPTPAHGGDPCAGDTSESQDCNTDPCPVNXXXXXXXXXXXXXXXXXXXSQERSRTCTNPTPAHGGDPCAGDTSEPQDCNTNPCPIHGVWTSWGSWETCSLTCGTGSQNRTRTCTDPAPQHGGDNCAGDASEPQDCNTNPCPVNGNWGQWSNWTEC-DKPCGVGFQNRSRVCDDP 974
C C +DG WS WS W C CG G Q R+C NPSV +GG C G+A C + PCPV+G W+AW WG CS+ CG G+Q R+R C NP PA GG C G ++ Q CN CP++G W W +W AC+ +CG G+++R+R C++P P +GG C G +S CN+DPCP +G W+ W WG C+ TC G R RTC NP P++GG C G S+ Q CNT+ CP+ G W SW SW CS +CG G + R R C P P GG C GD ++ CN CP + S D G+ F N + + D P
Sbjct: 4578 CQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAV-EIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPGGPQRARGSVIGNINDVEFGIAFLN-ATITDSP 4901 The following BLAST results are available for this feature:
BLAST of TCONS_00050522 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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