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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050524 ID=TCONS_00050524|Name=TCONS_00050524|organism=Clytia hemisphaerica|type=transcript|length=1741bpRun BLAST on NCBI transcript from alignment at scaffold_179:374247..471289+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050524 ID=TCONS_00050524|Name=TCONS_00050524|organism=Clytia hemisphaerica|type=transcript|length=97043bp|location=Sequence derived from alignment at scaffold_179:374247..471289+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00050524 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 229.565 bits (584), Expect = 2.747e-63 Identity = 135/289 (46.71%), Postives = 174/289 (60.21%), Query Frame = 3
Query: 18 CQIDGGWSSWS-WGACDAPCGPGTQIEERSCTNPSVSNGGLSCCGSATGNTQSCEVVPCPVNXXXXXXXXXXXCSDPCGTGSQERSRTCTNPTPAHGGDPCAGDTSESQDCNTNPCPVNXXXXXXXXXXXXXXXXXXXSQERSRTCTNPTPAHGGDPCAGDTSEPQDCNTNPCPIHGVWTSWGSWETCSLTCGTGSQNRTRTCTDPAPQHGGDNCAGDASEPQDCNTNPCPVNGNWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCNGTHTNETQMCNFNYCP 881
Q+ GG+S WS W AC CG G Q R C P +NGG C GS ++C+ PCPV+G W+ W W C+ CG G+Q R+RTC NP+ HGG PC G+ E CN PCPV+G W+AW WG C+ +CG G+Q R+R C NP PA GG C G ++ Q CN CPIHG W +W SW CS++CG G++ RTR C+DP PQ+GG C G + CN++PCP +GNW WS W C + C G R R CD+P P++GG C G + + Q CN + CP
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDL-EMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDS-QIQRCNTDMCP 4812 HSP 2 Score: 224.942 bits (572), Expect = 9.134e-62 Identity = 135/294 (45.92%), Postives = 175/294 (59.52%), Query Frame = 3
Query: 3 CGTANCQIDGGWSSWS-WGACDAPCGPGTQIEERSCTNPSVSNGGLSCCGSATGNTQSCEVVPCPVNXXXXXXXXXXXCSDPCGTGSQERSRTCTNPTPAHGGDPCAGDTSESQDCNTNPCPVNXXXXXXXXXXXXXXXXXXXSQERSRTCTNPTPAHGGDPCAGDTSEPQDCNTNPCPIHGVWTSWGSWETCSLTCGTGSQNRTRTCTDPAPQHGGDNCAGDASEPQDCNTNPCPVNGNWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCNGTHTNETQMCNFNYCP 881
C C +DG WS WS W C CG G Q R+C NPSV +GG C G+A C + PCPV+G W+AW WG CS+ CG G+Q R+R C NP PA GG C G ++ Q CN CP++G W W +W AC+ +CG G+++R+R C++P P +GG C G + CN++PCP HG W+ W W TCS TC G R RTC +P P +GG C G S+ Q CNT+ CPV+G+WG W +W++C CG G + R R+CD P P GG C G T T+ CN CP
Sbjct: 4578 CQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAV-EIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTR-CNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00050524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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