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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050529 ID=TCONS_00050529|Name=TCONS_00050529|organism=Clytia hemisphaerica|type=transcript|length=2466bp
AACAAATTTAACCGAGGCACGCATAGAGGAAGATATCTTTCGCCATGACT
TCGGgtaCAATGGAGGAAAGCCAGCTTCGCACAAGCACCATTGAACTCAT
TTCATCAATCCATGGCACCCAAAGACGTGCTGAACGTGCCATAGATGTCA
AGGATCTCAAATCAGCAATAAAACACGGCAAAAAGGAGCCTCAAATACGA
TATCGCAATGGTCAGAAACAGATTCGCTATAAATATACGTTTGCTGATGT
TGTCTATATCACTGATGAATTCAGTCGACTAGAGATAACAAGTTATGTTT
TACCGCTACCCTTGGATAATTACCACGTCCTGGATACTGAGGAGCATCAA
TACCTTGCTGCAAAGAGGCGAATGACTGAAAACCCCGGCTCTATAACTTC
GCATGCTGTATTTGTTGTCGATTGCAGCGGTTCAATGAAGAACAGTGATG
TTGTTGCACACCGGTGCCGGCTGGATGCTGTTCAGTACGGCATTGCTGTG
GAGTTCATTGCAAAACGTTTGCATAATCCATCATCTGGTGTCACTCAATT
AGATGTGGTGACCATAATCGAAATGAGAGATGAAGCCAAAGTTGTGTTCG
AAAAAGAACCAGTTAGTTGGGTGTTGTACAATAAATTGGTAGACCATGCA
AAGCATAGCAAACCATCTTCACATGGCAATTATTATCCAGCTCTTCAAAC
CGCACGTCAGATGTTAAGTGATGGTGACCATCCAAATCTAGCCTTATTAC
TTTTCTTTCTCTCTGATGGCCGACCAAGCGACGAGAGCTTCAATATCAGT
ANGttacttttttttctctctGATGGCCGACCAAGCGACGAGAGCTTCAA
TATCAGTATTTCAAATATCTTGTGTGAAGCTCAAATGATTGGCAAAGTCT
TCAAAAAGCGATTGAATTTCGGCATGGTTGCATATGGTAGGCCTTTGGAA
GATATGAGTGTGTTGGATCAAATGGCAACATGGATGTCAATGTACGGAGC
TGTTGGCAAATTTCATCGCTCTGATCTCAAGAAGGTGGATTCTCTTTCAA
CCTCCATTGCAACTATGGCAAGTACATTGACGAGCACCCGTACTATGCTG
ACAGCAGCTCGCACAGATCGAATGCAACAGAAAACCTTTAACATAACAGA
ATTCAGCAGGAATGTCATGTCACCTCAGAAGGATTGGGAAGTTAAAACGG
TGACCGCTAACTATTTGACTCGTTACGAACTAGTCAGGTCGCAAACattg
aaaaactttatttgGAAAGAGATTCCATTGGTTAGCCCTGAAGCTGTTGG
TATCTCCTTCTCTAAGAACCCTTTTGGGAAAGGAGCAGAGCGTCTTGTCT
ATCAACTCTGCGAAATCGATAAACGAAAGAGAAAAGTCGGTCAAAGTTTG
GTCATGAAGAATAGCAAATATGAAGGGAATTATGATTTCCGAAAATATCA
CGAACCGTTTTGTAAGACTCAGAAGATTGCTGCCAACACAGCTTTAAGGT
TCAATCAACGTTTAGAAAGAATGCCACAGATCACCAGTAAAGTGCCCCGA
GTGAAGTTTTTGCAATGTTACGTTTACGCGTTTTACGATGGTTATGACGA
GTTGAATATTTTAGCAGAGCGAGAGATCGATCATCATCAATACACCAAAT
GGAATGATAACACTGGGGGAGTTCTCGGTCAGCGTCGACAACAAGTCAAA
ACTATTCATGATCAGATCATCGAGgaggaggaagaagaagaagaagatga
taTTTCAGGTGAAGTTGAACCAACAGCTGATTCTGAAGATGAGGAAAACT
TCTATGGTGTTCGTGACTTAACCCAACAACCAAGAACCGCTGTTCAACAA
CGACATCAAAGAGTACAGATGGTCGATATCCTTGATGAAGAAGTCCCACA
GGCTTTTACTCATTTCTCTTACACGTGGAGTAACAGAGAGAAGATGGTTT
GTGATCTACAAGGTGTTTTGAATAAAACTACGAGAGAATTTGAGTTTACC
GATCCTGCTATTCATTACGCGTCCAAAAGTGGACGTCGACACGTTTACGG
ACGTACGGACAAAGGGAAAGATGGAATGCGTGAATTCTTCAAAACACATA
AATGCAACAAACTTTGTGAAGCGTTGGGAATTTCACAAGAACGCAtgtaa
aactttttcaaatagaGAGAAATTCGTAACCATAAAGATTTCCTACCATG
CACTGTTAAAAGTAACAATAACATTATAATATCatatattttgaatttcg
aaaagAACGGATTCATCAAACAGCTCTTCGTAGCCAGGTTTCCGGGATTA
TTCAGGACCTAATGACTGTATTACTCCATCTTCAGccaattttattcaat
tttctgaTTTGTAACgtttattattatattttcatACTAAATAGTTTACT
atttgataattatttttcttcccAAAAAGTAAAATACTACAAAGTCCTGT
ATTACCTTGAAGCAAC Run BLAST on NCBI transcript from alignment at scaffold_179:432519..435615+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050529 ID=TCONS_00050529|Name=TCONS_00050529|organism=Clytia hemisphaerica|type=transcript|length=3097bp|location=Sequence derived from alignment at scaffold_179:432519..435615+ (Clytia hemisphaerica)
AACAAATTTAACCGAGGCACGCATAGAGGAAGATATCTTTCGCCATGACT
TCGGGTAAGTACTGttgttttaaaatatattcCAATGTGGAAATTCTGCC
CATTTTGCCCACTTTTATCATAAATAGAGTTTTTGTAAATTCAAAAAGTA
AGTTCAGGGATTTAATTTCGGCTTCATAGCCAACCTGTTTTTAGGAAATT
TAGCATCGAGTATTGCCCGAGTTTTGTACTGTATGCTCAAAATATATAGA
TTAATTTCTGATTTAACTTTTTCCTTGATAgttttctgtaaaatatttct
tatatttattatttacgATCGGTATGAGCTTACCCATGTTGATTTCTTAT
GAGATCAAACAATTCATAAAAACATAATAACCCGGGGGTTAAAAAAATGA
CCAGACGTCCGGCCCAAAACTAGGCCTTTGAAATTGGACCCTTACAATGC
Agaaagttttttgcaaaatttgagcaaaaaatcgacccttacggtgcatt
ttcttgaagtcttttgaccattttcaggcaaaatatgtttagattttcta
aattttacacccttagagtgcaaaGTCTTTATTCTTACATACTTTTAGCA
GTTAAGAACGCGGTACCAACATAATAAATCGTTTTAGCATTATTTTATGT
AAATCATAACagtgttatttttttattttttaaaggtaCAATGGAGGAAA
GCCAGCTTCGCACAAGCACCATTGAACTCATTTCATCAATCCATGGCACC
CAAAGACGTGCTGAACGTGCCATAGATGTCAAGGATCTCAAATCAGCAAT
AAAACACGGCAAAAAGGAGCCTCAAATACGATATCGCAATGGTCAGAAAC
AGATTCGCTATAAATATACGTTTGCTGATGTTGTCTATATCACTGATGAA
TTCAGTCGACTAGAGATAACAAGTTATGTTTTACCGCTACCCTTGGATAA
TTACCACGTCCTGGATACTGAGGAGCATCAATACCTTGCTGCAAAGAGGC
GAATGACTGAAAACCCCGGCTCTATAACTTCGCATGCTGTATTTGTTGTC
GATTGCAGCGGTTCAATGAAGAACAGTGATGTTGTTGCACACCGGTGCCG
GCTGGATGCTGTTCAGTACGGCATTGCTGTGGAGTTCATTGCAAAACGTT
TGCATAATCCATCATCTGGTGTCACTCAATTAGATGTGGTGACCATAATC
GAAATGAGAGATGAAGCCAAAGTTGTGTTCGAAAAAGAACCAGTTAGTTG
GGTGTTGTACAATAAATTGGTAGACCATGCAAAGCATAGCAAACCATCTT
CACATGGCAATTATTATCCAGCTCTTCAAACCGCACGTCAGATGTTAAGT
GATGGTGACCATCCAAATCTAGCCTTATTACTTTTCTTTCTCTCTGATGG
CCGACCAAGCGACGAGAGCTTCAATATCAGTANGttacttttttttctct
ctGATGGCCGACCAAGCGACGAGAGCTTCAATATCAGTATTTCAAATATC
TTGTGTGAAGCTCAAATGATTGGCAAAGTCTTCAAAAAGCGATTGAATTT
CGGCATGGTTGCATATGGTAGGCCTTTGGAAGATATGAGTGTGTTGGATC
AAATGGCAACATGGATGTCAATGTACGGAGCTGTTGGCAAATTTCATCGC
TCTGATCTCAAGAAGGTGGATTCTCTTTCAACCTCCATTGCAACTATGGC
AAGTACATTGACGAGCACCCGTACTATGCTGACAGCAGCTCGCACAGATC
GAATGCAACAGAAAACCTTTAACATAACAGAATTCAGCAGGAATGTCATG
TCACCTCAGAAGGATTGGGAAGTTAAAACGGTGACCGCTAACTATTTGAC
TCGTTACGAACTAGTCAGGTCGCAAACattgaaaaactttatttgGAAAG
AGATTCCATTGGTTAGCCCTGAAGCTGTTGGTATCTCCTTCTCTAAGAAC
CCTTTTGGGAAAGGAGCAGAGCGTCTTGTCTATCAACTCTGCGAAATCGA
TAAACGAAAGAGAAAAGTCGGTCAAAGTTTGGTCATGAAGAATAGCAAAT
ATGAAGGGAATTATGATTTCCGAAAATATCACGAACCGTTTTGTAAGACT
CAGAAGATTGCTGCCAACACAGCTTTAAGGTTCAATCAACGTTTAGAAAG
AATGCCACAGATCACCAGTAAAGTGCCCCGAGTGAAGTTTTTGCAATGTT
ACGTTTACGCGTTTTACGATGGTTATGACGAGTTGAATATTTTAGCAGAG
CGAGAGATCGATCATCATCAATACACCAAATGGAATGATAACACTGGGGG
AGTTCTCGGTCAGCGTCGACAACAAGTCAAAACTATTCATGATCAGATCA
TCGAGgaggaggaagaagaagaagaagatgataTTTCAGGTGAAGTTGAA
CCAACAGCTGATTCTGAAGATGAGGAAAACTTCTATGGTGTTCGTGACTT
AACCCAACAACCAAGAACCGCTGTTCAACAACGACATCAAAGAGTACAGA
TGGTCGATATCCTTGATGAAGAAGTCCCACAGGCTTTTACTCATTTCTCT
TACACGTGGAGTAACAGAGAGAAGATGGTTTGTGATCTACAAGGTGTTTT
GAATAAAACTACGAGAGAATTTGAGTTTACCGATCCTGCTATTCATTACG
CGTCCAAAAGTGGACGTCGACACGTTTACGGACGTACGGACAAAGGGAAA
GATGGAATGCGTGAATTCTTCAAAACACATAAATGCAACAAACTTTGTGA
AGCGTTGGGAATTTCACAAGAACGCAtgtaaaactttttcaaatagaGAG
AAATTCGTAACCATAAAGATTTCCTACCATGCACTGTTAAAAGTAACAAT
AACATTATAATATCatatattttgaatttcgaaaagAACGGATTCATCAA
ACAGCTCTTCGTAGCCAGGTTTCCGGGATTATTCAGGACCTAATGACTGT
ATTACTCCATCTTCAGccaattttattcaattttctgaTTTGTAACgttt
attattatattttcatACTAAATAGTTTACTatttgataattatttttct
tcccAAAAAGTAAAATACTACAAAGTCCTGTATTACCTTGAAGCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050529-exon-scaffold_179-1491911889:432519..432572 | TCONS_00050529-exon-scaffold_179-1491911889:432519..432572 | Clytia hemisphaerica | exon |
| TCONS_00050529-exon-scaffold_179-1510915933:432519..432572 | TCONS_00050529-exon-scaffold_179-1510915933:432519..432572 | Clytia hemisphaerica | exon |
| TCONS_00050529-exon-scaffold_179-1575043694:432519..432572 | TCONS_00050529-exon-scaffold_179-1575043694:432519..432572 | Clytia hemisphaerica | exon |
| TCONS_00050529-exon-scaffold_179-1491911889:433204..435615 | TCONS_00050529-exon-scaffold_179-1491911889:433204..435615 | Clytia hemisphaerica | exon |
| TCONS_00050529-exon-scaffold_179-1510915933:433204..435615 | TCONS_00050529-exon-scaffold_179-1510915933:433204..435615 | Clytia hemisphaerica | exon |
| TCONS_00050529-exon-scaffold_179-1575043694:433204..435615 | TCONS_00050529-exon-scaffold_179-1575043694:433204..435615 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:432519..435615 + |
Blast
The following BLAST results are available for this feature:
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