TCONS_00050535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050535
Unique NameTCONS_00050535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1015

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050535 ID=TCONS_00050535|Name=TCONS_00050535|organism=Clytia hemisphaerica|type=transcript|length=1015bp
CAAGAGTTTAATTACGGCGGTGGCTTACCGAAAGGACCAAGTGTAAGACA
AACTATTTACGAAATGAATGAAGACGGAAGCCACAATGAACAATCCGAAA
AGTCGAAATCGGGAAAATCGAATCTGGAATCAGATAAACAGGATACAGGA
CTAAAACCTTCAGAAAGTGGAAAGAAAAAACAGAGTGGCAAGAATGCAAA
CGGTTACGAACTTGCGGATGTTGTAATGAAGCGCGGAAAATCTACACCTG
TGGAAAAGGGGAAACCAAAAATCGAACCCGAGAAAATCGGGAAGAAAAAT
CGCTCAGTTGTAGAAGATAGGAAGAAGTTGTTCGAGCAAAAAGGAACAGA
GATTTCTACGGGACCGAAAAAAAGAACCAAAACTGTTGAATCTAAATGCG
AAAGAGAATCGGTGGCGATTTAGTGAGAAACGTGGTTTAAAGGTTTTAAG
AAAGCCCCATTgaactcaattttttatttccgTGTATTTGGAAAACGGCC
TGCACTATAAGACTTTAATTTGAGATCCcaattttttgctgaatttaGGA
TCAGCCCAGATTGATTATTCTCTCCCAAGGAGCCTAGCTAGCCTGCAAAG
ATAAAGCAAAAATCACAGTCTGGGTCTGGTAATGTGTCTCAGACAACACT
CATAGGAAAGCAATTTCTTTCTAGCTTTGATCAAATGACAAAGGGCTGGC
AAGATATTCGccgtggtaaaggttaaagaCAAGCTTATGAAATTGCTCTA
AATCATATGCGACCGTAGcataaaggtagagcatccagctgcggtgcgca
aggttgtgggttcaatccccagctgggtcataccaaagattcccaaaatg
gtacttggtgcctctctgcttgatgctcagcaactaaagggtaagtggag
aaatccagggaaaggagtagcgccctcccctaccttcgggtagacatcta
tacgaaaagggagctttcgggtcgccctcgactgcggttgcaaacttact
tacttacttactaaa
Run BLAST on NCBI

transcript from alignment at scaffold_179:36717..38013-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050535 ID=TCONS_00050535|Name=TCONS_00050535|organism=Clytia hemisphaerica|type=transcript|length=1297bp|location=Sequence derived from alignment at scaffold_179:36717..38013- (Clytia hemisphaerica)
CAAGAGTTTAATTACGGCGGTGGCTTACCGAAAGGACCAAGTGTAAGACA
AACTATTTACGAAATGAATGAAGACGGAAGCCACAATGAACAATCCGAAA
AGTCGAAATCGGGAAAATCGAATCTGGAATCAGATAAACAGGATACAGGA
CTAAAACCTTCAGAAAGTGGAAAGAAAAAACAGAGTGGCAAGAATGCAAA
CGGTTACGAACTTGCGGATGTTGTAATGAAGCGCGGAAAATCTACACCTG
TGGAAAAGGGGAAACCAAAAATCGAACCCGAGAAAATCGGGAAGAAAAAT
CGCTCAGTTGTAGAAGATAGGAAGAAGTTGTTCGAGCAAAAAGGAACAGA
GATTTCTACGGGACCGAAAAAAAGAACCAAAACTGTTGAATCTAAATGCG
AAAGAGAATCGGTGGCGATTTAGTGAGAAACGTGGTTTAAAGGTTTTAAG
AAAGCCCCATTGAACTCAATTTTTTATTTCCGTGTATTTGGAANTGGTTA
TGAACTTGCGGATGTTGCAATGAAGCGCGGAAAATCTACACCTGTGGAAA
AGGGGAAACCCGAGAAAATTGGGAAGAAAAATCGGTCAGTTGTAGAAGAT
AGGAAGAAGTTGTTTGAGCAAAGGGGAACAGAGAATTCTACGGGACCGAA
AAAAAGAACCAAAACTGGTGAATCTAAATGCGAAAGAGAATCGGTCGCAA
TTTAGTGAGAGACGTGGTTTGAAGGTTTTAAGAAAGCCCCATTGAACTCA
ATTTTTTATTTCCGTGTATTTGGAAAACGGCCTGCACTATAAGACTTTAA
TTTGAGATCCCAATTTTTTGCTGAATTTAGGATCAGCCCAGATTGATTAT
TCTCTCCCAAGGAGCCTAGCTAGCCTGCAAAGATAAAGCAAAAATCACAG
TCTGGGTCTGGTAATGTGTCTCAGACAACACTCATAGGAAAGCAATTTCT
TTCTAGCTTTGATCAAATGACAAAGGGCTGGCAAGATATTCGCCGTGGTA
AAGGTTAAAGACAAGCTTATGAAATTGCTCTAAATCATATGCGACCGTAG
CATAAAGGTAGAGCATCCAGCTGCGGTGCGCAAGGTTGTGGGTTCAATCC
CCAGCTGGGTCATACCAAAGATTCCCAAAATGGTACTTGGTGCCTCTCTG
CTTGATGCTCAGCAACTAAAGGGTAAGTGGAGAAATCCAGGGAAAGGAGT
AGCGCCCTCCCCTACCTTCGGGTAGACATCTATACGAAAAGGGAGCTTTC
GGGTCGCCCTCGACTGCGGTTGCAAACTTACTTACTTACTTACTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032005XLOC_032005Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050535-exon-scaffold_179-1575043694:37572..38013TCONS_00050535-exon-scaffold_179-1575043694:37572..38013Clytia hemisphaericaexon
TCONS_00050535-exon-scaffold_179-1575043694:36717..37289TCONS_00050535-exon-scaffold_179-1575043694:36717..37289Clytia hemisphaericaexon
TCONS_00050535-exon-scaffold_179-1510915933:37572..38013TCONS_00050535-exon-scaffold_179-1510915933:37572..38013Clytia hemisphaericaexon
TCONS_00050535-exon-scaffold_179-1510915933:36717..37289TCONS_00050535-exon-scaffold_179-1510915933:36717..37289Clytia hemisphaericaexon
TCONS_00050535-exon-scaffold_179-1491911889:37572..38013TCONS_00050535-exon-scaffold_179-1491911889:37572..38013Clytia hemisphaericaexon
TCONS_00050535-exon-scaffold_179-1491911889:36717..37289TCONS_00050535-exon-scaffold_179-1491911889:36717..37289Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:36717..38013 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.161349	0.0379253	0.175936	0.632527	0.116554	0.149105	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.64755	1.33215	1.44473	2.50031
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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