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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050539 ID=TCONS_00050539|Name=TCONS_00050539|organism=Clytia hemisphaerica|type=transcript|length=1095bp
CTCAGAAAATATAGGAAACTCTCTGAACGATAAAAATAGATCCAATATTG
TACGAGTAAAATTACAGCTTTTTTATCGTCTTCTTGAAAAACATCGATAA
ACTTTTCTCTCTCTGTTTGTGtctttcttttttgtctttttttttcactt
ccTGTATTTTGggtgaaatcaacatcaaaacattcgaaaatgatTCGGAT
GGTTCgtgccattgagtttcaagcccgaagggctagaggcgaaaatTTAA
CCCTTTTCAggcaaaagaaattgaaaccacttatttcccatccaaaatgc
gcatagaacgcgccgtaatcatgacgacggattgtatctagcacTTCCTT
TGTTTTAGAGGACTTAATtgtttgaaatctagcgatagattatAGTTCCA
ATCTGACAATTGTTTAAAAACTACGCACGGGCATTCTGGATAGGAAATGA
GTGGTTAAAGTTTTGCCAGGAGTCtcacctctagcccttcggggttAAAG
CTCAATGGCTCTTGTGTGCATTGAGATGATAAAGAattattttctaattc
attAAGAAGAAAACTCAGTCGGAAATAACttaatttatttgatttgaCTT
TGAACCTATTTAATTACCCATTTAATCCTTTTATTTGCTTGCATACTTTT
TTGTATAAACAATTTCagatgataaaataaaaaatgaaatatggcTGTAA
ACGTGACAAATATTTTATCGAATGTGTCACATTTGAAATCACAACTATCG
GAAAAAGcgaaaaatttatccactttgATTGAACAGCAGTATGAGCAACT
ATGCAAATTGGTTGCACAAAAGGAGCAAGCAGACGTCGAACTAAAAGAAT
TGAACCTGAAGAAGTCGAACCTTGATACTGAGATTGCCAACAAGAACCAG
GTCGTTGAACGGAGACAAACGGAAGTGAACAATAAACAGAATGATTTCAA
CAAAGCTGACAAGGACTATCAAGATGCAAAAAATGATAGGGAGCAAGCTA
GTAGAACACAAAGAGATACTAATATAGGTGTGGGTATAGGAGCTGGAGTG
CTCACTTTGATTTCCTTTGGTGCAGCCGCACCTATAGCAGCAGGT Run BLAST on NCBI protein sequence of TCONS_00050539-protein >TCONS_00050539-protein ID=TCONS_00050539-protein|Name=TCONS_00050539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MAVNVTNILSNVSHLKSQLSEKAKNLSTLIEQQYEQLCKLVAQKEQADVE
LKELNLKKSNLDTEIANKNQVVERRQTEVNNKQNDFNKADKDYQDAKNDR
EQASRTQRDTNIGVGIGAGVLTLISFGAAAPIAAG Run BLAST on NCBI transcript from alignment at scaffold_179:111853..114411- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050539 ID=TCONS_00050539|Name=TCONS_00050539|organism=Clytia hemisphaerica|type=transcript|length=2559bp|location=Sequence derived from alignment at scaffold_179:111853..114411- (Clytia hemisphaerica)
CTCAGAAAATATAGGAAACTCTCTGAACGATAAAAATAGATCCAATATTG
TACGAGTAAAATTACAGCTTTTTTATCGTCTTCTTGAAAAACATCGATAA
ACTTTTCTCTCTCTGTTTGTGTCTTTCTTTTTTGTCTTTTTTTTTCACTT
CCTGTATTTTGGGTGAAATCAACATCAAAACATTCGAAAATGATTCGGAT
GGTTCGTGCCATTGAGTTTCAAGCCCGAAGGGCTAGAGGCGAAAATTTAA
CCCTTTTCAGGCAAAAGAAATTGAAACCACTTATTTCCCATCCAAAATGC
GCATAGAACGCGCCGTAATCATGACGACGGATTGTATCTAGCACTTCCTT
TGTTTTAGAGGACTTAATTGTTTGAAATCTAGCGATAGATTATAGTTCCA
ATCTGACAATTGTTTAAAAACTACGCACGGGCATTCTGGATAGGAAATGA
GTGGTTAAAGTTTTGCCAGGAGTCTCACCTCTAGCCCTTCGGGGTTAAAG
CTCAATGGCTCTTGTGTGCATTGAGATGATAAAGAATTATTTTCTAATTC
ATTAAGAAGAAAACTCAGTCGGAAATAACTTAATTTATTTGATTTGACTT
TGAACCTATTTAATTACCCATTTAATCCTTTTATTTGCTTGCATACTTTT
TTGTATAAACAATTTCAGATGATAAAATAAAAAATGAAATATGGCTGTAA
ACGTGACAAATATTTTATCGAATGTGTCACATTTGAAATCACAACTATCG
GAAAAAGCGAAAAATTTATCCACTTTGATTGAACAGCAGTATGAGCAACT
ATGCAAATTGGTTGCACAAAAGGAGCAAGCAGACGTCGAACTAAAAGGTG
AGTGAATGTATTCTATGAAAACTATGAATTAGTGGCGTCACCTTATCTAA
CAGTTTGCTTTGTAAGGTCAGCGTCAAGGGAACACTCCCTAAAATTTATA
GAAATGTACCAAATAGCCAAATCTAGCTCTAAAGAAATTAGAAAACCACT
TAAAATAACTCATGTTTAAATAACCCAAGGGAGATTTTGTAAGGAGCTCC
AATTGTAGTGTCATTTACTTCGAATAACGGGTAAGTAGAAAACCTGGCCC
ACCTCTCTGGCCCGGGCCATATGGCCTACCCCATGGCCTACCCTTTGGGC
CACCTTCAAAGATTTTTTTACAGATTTTATTCTCGGACAACCGGGTTATA
ATGATATGTGTGCGTCGGGATGCGCTGTAATTTCATTATGATTTCATCAT
AAAGCGCGTCGGCGTTTATGCATCAGCCTTTTTACGACAAACAATTGGTC
AAATCATCTAAATACTCTAAGAATGATTACACTCAAGTATTATTAAGAAA
GTGCCAAAATTGAGGGTGAAATATTCTTAACGTAGGTCTTGTCTGACCAA
GCGATAACACCATCAAAATGGTTAAAAATTTTCAACTATGTCACCAGAAG
TCAGACAAATGGTAGCCCACTGTGATCTTGCACTTGGGACCCCTAGTTCG
AGTCGGGTTCGGGTCAACTTCAAAATTTTTCGCCAGGTTTTGATATTTTA
TGATTTTTGGGGTGTAGATTCCAAAAAAGGGGTCCGAAGTCCGGAAAAGT
TGAAGAACGGCGCTACGGGGGTTGTCGCGGTTGTCGGCACCCGTACAATA
CTTTATCAGACCCTTTTAATCTATGTCAGGTGTATAAAATGCAGACTCAA
AACTTTTTTATTTTTTTTTGTTTATTTCAGTCTCGTTGTTTTTCTAAATG
CTAGAAAAACCAAAGTCCAACCTCAGAATTGGTTTCCAGATTCCAGATTT
TCAGAATGATAAGAATGAAATCTTTTTAGAGTTTTAAGGTGGGCCATGAG
GTAGGCCAAGGGTAGGCCATATGGCCCGGGCCAGAGAGGTGGGCCAGGTT
TTCTACTTACCCTGGAATAACCGAGAGTTAGAACATTTTTAATTTCAAAT
GCAAGGAATTAACCATGACATCTTAATACGTATTATTAGCGATCCAAAAA
AAATCTACAATCTGATTGGCTAAAAAGAGTAGAATTTATCTTGTATTTTA
AATGTACAAAATATAAATTGACGAAAAGATGTTGTTGCATTGTAGCGGCA
ATCTGACGTCACTTTGCTACAAAAGTGCCCTGCGCTTTTTTTCCAACACA
ACACTGGTTATCAGATCTTTGCTCGTACAAAATGGAAATATTTCACTCGT
TTCGGATTTTTTCCGCCTAAAGGCTCAGAAAAGATTATGCGGAAAAATTT
CGGAACTCATAAAATATTTCTCATATTTTACTCGCAACTATCCGATTACT
ATTACATTTAGAATTGAACCTGAAGAAGTCGAACCTTGATACTGAGATTG
CCAACAAGAACCAGGTCGTTGAACGGAGACAAACGGAAGTGAACAATAAA
CAGAATGATTTCAACAAAGCTGACAAGGACTATCAAGATGCAAAAAATGA
TAGGGAGCAAGCTAGTAGAACACAAAGAGATACTAATATAGGTGTGGGTA
TAGGAGCTGGAGTGCTCACTTTGATTTCCTTTGGTGCAGCCGCACCTATA
GCAGCAGGT Coding sequence (CDS) from alignment at scaffold_179:111853..114411- >TCONS_00050539 ID=TCONS_00050539|Name=TCONS_00050539|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_179:111853..114411- (Clytia hemisphaerica)
AATTGAACCTGAAGAAGTCGAACCTTGATACTGAGATTGCCAACAAGAAC
CAGGTCGTTGAACGGAGACAAACGGAAGTGAACAATAAACAGAATGATTT
CAACAAAGCTGACAAGGACTATCAAGATGCAAAAAATGATAGGGAGCAAG
CTAGTAGAACACAAAGAGATACTAATATAGGTGTGGGTATAGGAGCTGGA
GTGCTCACTTTGATTTCCTTTGGTGCAGCCGCACCTATAGCAGCAGGTAT
GGCTGTAAACGTGACAAATATTTTATCGAATGTGTCACATTTGAAATCAC
AACTATCGGAAAAAGCGAAAAATTTATCCACTTTGATTGAACAGCAGTAT
GAGCAACTATGCAAATTGGTTGCACAAAAGGAGCAAGCAGACGTCGAACT
AAAAGAATTGAACCTGAAGAAGTCGAACCTTGATACTGAGATTGCCAACA
AGAACCAGGTCGTTGAACGGAGACAAACGGAAGTGAACAATAAACAGAAT
GATTTCAACAAAGCTGACAAGGACTATCAAGATGCAAAAAATGATAGGGA
GCAAGCTAGTAGAACACAAAGAGATACTAATATAGGTGTGGGTATAGGAG
CTGGAGTGCTCACTTTGATTTCCTTTGGTGCAGCCGCACCTATAGCAGCA
GGTATGGCTGTAAACGTGACAAATATTTTATCGAATGTGTCACATTTGAA
ATCACAACTATCGGAAAAAGCGAAAAATTTATCCACTTTGATTGAACAGC
AGTATGAGCAACTATGCAAATTGGTTGCACAAAAGGAGCAAGCAGACGTC
GAACTAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050539-exon-scaffold_179-1575043694:113565..114411 | TCONS_00050539-exon-scaffold_179-1575043694:113565..114411 | Clytia hemisphaerica | exon |
| TCONS_00050539-exon-scaffold_179-1575043694:111853..112100 | TCONS_00050539-exon-scaffold_179-1575043694:111853..112100 | Clytia hemisphaerica | exon |
| TCONS_00050539-exon-scaffold_179-1510915933:113565..114411 | TCONS_00050539-exon-scaffold_179-1510915933:113565..114411 | Clytia hemisphaerica | exon |
| TCONS_00050539-exon-scaffold_179-1510915933:111853..112100 | TCONS_00050539-exon-scaffold_179-1510915933:111853..112100 | Clytia hemisphaerica | exon |
| TCONS_00050539-exon-scaffold_179-1491911889:113565..114411 | TCONS_00050539-exon-scaffold_179-1491911889:113565..114411 | Clytia hemisphaerica | exon |
| TCONS_00050539-exon-scaffold_179-1491911889:111853..112100 | TCONS_00050539-exon-scaffold_179-1491911889:111853..112100 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:111853..114411 - |
Blast
The following BLAST results are available for this feature:
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