TCONS_00050548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050548
Unique NameTCONS_00050548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1861

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050548 ID=TCONS_00050548|Name=TCONS_00050548|organism=Clytia hemisphaerica|type=transcript|length=1861bp
CCCAAATTATGATGAACTACCACCACGTTGTTGTTTTAGACGTCAATATC
ttgcaatcaaaacaaatcacgcaaaagtttttacaaaatgaaaaaatcaa
ctcCTCCTTTTGGTATAAAAACGATACTAAGGCCAGTGAATTGGGAACAC
AAaagaagcttttcaaaaaatttttagaaGCCAATCAAAACTCTAACAAG
TTTGGTTACcttatttcaatcaatttacGAGACGAATACCAACCAATCAG
GGTTCAAGCTAAAAGATCTGGTGTTGCTGACTCGTTAGATTTCATTATCC
CTGATGTACGTCAAATAGGAAAACCTAAAGTGACCTTTGTATCTTATGAC
CATTTCAAAATTTCCGTCACAAAACCAAACAATACATGGGTGACTCATTT
CTTGGTGGAATACTGGCCAATCATCGATGACAGCGAAGAATCTAAAACGT
CGCTTAAGTTTGCTTTCAGTCTGCAAAATACACAAAACGTCACCATCACT
AACTTAAACTATTTGACTACATACGAAGTCCGTATCGTCCATGTGACAGA
ATTTGGTATTTCTCCAACCGGTGAAAAAGTCAGTGTGACAACTAAACCAT
CCTCCGAACCAACCGTGCTGAAATTTCAAAGTTCTGAAAGCTCATTGAAG
ATATCTTGGAGTGAACCAGTCTATCAAGCTAATGGTATCAAGATAAAGGA
TTATCGTGTTGTATTGAAAGatTCTGTTGGTCAAGTCGTTGCAGACCAGC
AGGTCCAGGATGTTACAAACATCAAGTTTGACAATCTTAATGCCGTCACC
AAATACATTGTAACCGTAAAAGCAATTGCTGAATTTATTCGAAAAGATTC
GACCAACACCACCAAAAAGATCCAAGAATACAGCCATCCAGCTACCTTGA
TTGCCTTCACTGCTGCGAATCCTCTGAATCCAAATTCATTCCAAGCTAAT
GCTGATTATTACTCTGTTACACTCGATTTAGGGAAATCTAACATCACTCA
AGTTCCAAGAGTCACTGGATATGTTGTCCGGTACAGCTTAATGGATTCAA
CTGGGCAAAACATAAAGCCTGGAACTAGTCGAACACAAAGTTTCCCTGGC
AACAATGATCCGAAGAAAATTATTGGCTTGGCATCAGGATTTACCTATGG
ACTCGAAGTTCAGGAAATTACAACGGTTgggaaaagtattttttcatcaC
CTATTTTCATAGTTCGAACTGACCCAAGAGTTACCAATGGAGGGTACAGC
CAATGGACAAGCTGGTCTGTCTGTAACAGAATATGCGGACCAGGTCAGCA
AACAAGAAGTCGAACATGCACCAATCCTGAACCTTCCAATGGTGGTACGA
ATTGTGAGAGTTTGGGACAGTCAAGTCAAATTAAGAGTTGCAACTTGAAG
TCTTGCTTCGAGACAAACATTCAAGAATGCTCATGGAGGGGATACGTGGA
GATTAACAGCGGCTTGATCAAGGAATGtactttcaataaaaaacactCCA
CGACATCTTTATTGGTCTCTGTCAAAACGAGTGCACGTATTCATGAAGAT
CCATGTTCACTTTGTTGTGCAAGATATTATGTCACTTTCAATGGACACGA
ATGCTCTCCAGTGCCGATAGACCAAGCAATTACACTCAACGATAGTAAAG
ACAATTGGGATTGGATCCCTTTCACAATTCGAGGTATCTGTAAACTCAAC
CATTATTCTGGTAATATTAAAGTGGGTTTAAATGTTGGACAATGCGGTTC
AAAAGCGTCTGTCGACCCAGACACAGGCAATGGTGATTTCGTCACCAGCA
GTATAATTATAGAAGAGGTCGAAAATGTCAAGCTTTACATTCTTTAGAAG
CTTCAAACCTG
Run BLAST on NCBI

transcript from alignment at scaffold_179:329242..335396-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050548 ID=TCONS_00050548|Name=TCONS_00050548|organism=Clytia hemisphaerica|type=transcript|length=6155bp|location=Sequence derived from alignment at scaffold_179:329242..335396- (Clytia hemisphaerica)
CCCAAATTATGATGAACTACCACCACGTTGTTGTTTTAGACGTCAATATC
TTGCAATCAAAACAAATCACGCAAAAGTTTTTACAAAATGAAAAAATCAA
CTCCTCCTTTTGGTATAAAAACGATACTAAGGCCAGTGAATTGGGAACAC
AAAAGAAGCTTTTCAAAAAATTTTTAGAAGCCAATCAAAACTCTAACAAG
TTTGGTTACCTTATTTCAATCAATTTACGAGACGAATACCAACCAATCAG
GGTTCAAGCTAAAAGATCTGGTGTTGCTGACTCGTTAGATTTCATTATCC
CTGATGTACGTCAAATAGGAAAACCTAAAGTGACCTTTGTATCTTATGAC
CATTTCAAAATTTCCGTCACAAAACCAAACAATACATGGGTGACTCATTT
CTTGGTGGAATACTGGCCAATCATCGATGACAGCGAAGAATCTAAAACGT
CGCTTAAGTTTGCTTTCAGTCTGCAAAATACACAAAACGTCACCATCACT
AACTTAAACTATTTGACTACATACGAAGTCCGTATCGTCCATGTGACAGA
ATTTGGTATTTCTCCAACCGGTGAAAAAGTCAGTGTGACAACTAAACCAT
CCTCCGAACCAACCGTGCTGAAATTTCAAAGTTCTGAAAGCTCATTGAAG
ATATCTTGGAGTGAACCAGTCTATCAAGCTAATGGTATCAAGATAAAGGA
TTATCGTGTTGTATTGAAAGGTAAGAATATTAGTTTAAAACTCAATGTTT
TCTGTTTCCATTCAGACCTAGATCGAAGGATGATGATGATGATGATGATG
ATGATGATGATGATGATGATGATGATGACGATGAATATTTTCTTTATTGC
TTCATGAAACACACATACACTGGATAAACAACAAGCTAATTTTTCATTGT
TTTCTTATGCTCTAGCTATGTCCGCAGTAATGACATTATTATTCACTCTC
CTTGCTTCATTACATTTTTTTTTCATTCTTTTTCATCAAAACACGGCCTT
TCAATTCCCAAATGAGAATTAAAGTTTTCCTTAGAGAGGCAAACGCATCA
AAATAATTGCTAATTGTATCAGTCTATATAATTTCTATTACGTCCATGCT
CGCATATATCTTAACTACTCTAAAGAATTTCAATGTGCAAAAAAATCANG
ATCAATATAATTGCTAATTGTATCAGTCCATCTAATTTCTATTACGTCCA
TGCTCGGATCTCAACTAATCTAAAGAATTAATTTTGATACTTTTTTTTTG
ACAGATTCTGTTGGTCAAGTCGTTGCAGACCAGCAGGTCCAGGATGTTAC
AAACATCAAGTTTGACAATCTTAATGCCGTCACCAAATACATTGTAACCG
TAAAAGCAATTGCTGAATTTATTCGAAAAGATTCGACCAACACCACCAAA
AAGATCCAAGAATACAGCCATCCAGCTACCTTGATTGCCTTCACTGCTGC
GAATCCTCTGAATCCAAATTCATTCCAAGCTAATGCTGATTATTACTCTG
TTACACTCGATTTAGGGAAATCTAACATCACTCAAGTTCCAAGAGTCACT
GGATATGTTGTCCGGTACAGCTTAATGGATTCAACTGGGCAAAACATAAA
GCCTGGAACTAGTCGAACACAAAGTTTCCCTGGCAACAATGATCCGAAGA
AAATTATTGGCTTGGCATCAGGATTTACCTATGGACTCGAAGTTCAGGTG
ATTCGATTTTATATTATTCCTAATATAACAAGATAAAACAATATTCCTAA
ATGATCTTATTAAATAGCTCCTCAAAAGCCACTTCTATAGTACTATAGTT
GCGAGCTGACGGGGAGGGTGCCGCCTGACTTTCGACCCTCGGACCTTTAC
CGGAAATAAAAAGTAGAAAACAAAGGAACATTTTGTAAATTTTACGACCC
TTACCGGAACAAATTTGACAAATTTTGACCAAATTTCGATCTTTCTGGGG
TAAAAAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGACTGAAATTTGATTTTCTGATTTTTCCGACC
CTTTGCAGGACTTTGGAAATCCAAAAAAGGTACCCTTAAGGGCAGCACAT
ACCGTACCCTCCATTTGCCTAAGAACCCCCACCCCGGGTATTTTGCCCAG
TTTTATCTACTGAAGATCTTATCTTTATCACAAACAAAAAAATCTGCAAA
GATGGAAAAGAAAACCTAAGAATTACAAATTTTAGTTAGCCAAAAACAGT
AGAAATTCATTAACTCGCGTTTTTCTACTTGCTTTCTTCAGGAAATTACA
ACGGTTGGGAAAAGTATTTTTTCATCACCTATTTTCATAGTTCGAACTGA
CCCAAGAGGTAAGAATTCGCACGCAATTACAGAACAATGTTATTTTTTAT
TGAATCAAACAGAAAAGATAAATTTTTCGACATAAAATATTGATCGAATC
ATCAGGACCTTTTAAAGAGATCCCAGCTGGCATGGCAAACAACGTTGTCT
CGACGTTCATCTACCGTTAGATGAACGTTGTGAGCGTTAATTAAACGTTG
AAACAATGTTGTGTACCACCTGGGATTGTGAGACTACCTCTGTCAATTTG
TTTGTCTTTGTTAAAATAGTAACGTGCGCAACGCACTGGGCTCAACTTCA
GTATTTCCCCAACTAATTCGAAGGCCCGATTGTAGATGCCCAAATAATAG
GGTGCAAGAACTCGCAAGACCTTTAAAAATAACAGGCTAAACGGACTTTC
AGCTCCAAAAATTTTCTCTAATTCAAATTTGTATCTACCAACGCGGATTT
CTTTTCGAATTAAACAAAAAATCTCCACCATAAATTCGAATCGAGAATAA
AAACAATGATCCCATTTAGCGTGAAAATAGCGTGAAAATTCTCTAAATAT
TACATACAGAAATAAATAAGATATCAATCAAATTGACTAGAGGTGAAAAT
TTCGAAATAAAGTTGTAGAATTGAACTATAGTGGAAAAAACTCCCAGATA
TTGACCCAAGGAACAAGTGTGCAAAATTTCAGCCAAATCGAACAATTTTT
GAAGTCTCCAGGCTGCCCTAAAGTTTTAGCCTCGTTTTGGCGAAAAACTC
GTCCCCAAGCCTCAAAAATCAAAATTTTCAAAAAAAGAAAAAAGTCCCCC
CAGATATTCACCCAAGGAACAAGTGTGCAAAATTTCAGCTAAATCCAAGC
ATTTTTGAAGTCTCCAGGCTGCCCTAAAGTTTTAGCCTCGTTTTGGCGAA
AAACTCGTCCCCAGGCCCCAAAAATCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGGC
TGCCCTAAAGTTTTTGTGACAGACAGACAGACACACACACAGACAGACAG
ACAGACAGACAGACAGACATTGTCAGATTGTAGCTCAACTGAAGTTGAGA
ATTATTATATCGAGAATTTTATGAATTAAAAAGGAAAATTCTTTTCGGTG
TGCGTGCCCTAGGAGTTGGGGTTTTTACCCTTTCAAAGTCAATTTTGCCA
ATTTTGTCAATTTTGTCATTCTAAGGGTCGTCTTTTCAGCAAAAACCAGT
CCTTCTAAGGGAAAGAGTTTTTCAGTCGAATGTTTACTAAATTTCTGAGA
TTTTACAAAAAATTATAATTAATAAGCATATAATAAGCATAGGTTATGCC
TGGATGCTTTGAAAGCAACCTATAGACAAATGTTTCACATATTATGATTA
ATAAAAAGATTTTTAGTGCTCTATTCTCTTATGTAGTTACCAATGGAGGG
TACAGCCAATGGACAAGCTGGTCTGTCTGTAACAGAATATGCGGACCAGG
TCAGCAAACAAGAAGTCGAACATGCACCAATCCTGAACCTTCCAATGGTG
GTACGAATTGTGAGAGTTTGGGACAGTCAAGTCAAATTAAGAGTTGCAAC
TTGAAGTCTTGCTGTAAGTTTTTTATCCAGCTCTCATAAAGTTATATCAA
TGTTTGTCATATTGAGCCCCCCTACAATCAAGGTAATAAATATTTGAGAA
AATAGGGAAATTCTCCAGGAAGTTTTGAAACCACAATCGATTTGTAAGTG
CTCTAAAGTAGGTTCGAAGGGTAGAGATTTAACTCTGAGTTTTAATGCTA
GACTTGGGACCTTAGGATCTGATTAAGTACACAGTGATCAAACTTTTGAT
TGTATTTATCTAATTGTCTTTTCATTTATAGTCGAGACAAACATTCAAGA
ATGCTCATGGAGGGGATACGTGGAGATTAACAGCGGCTTGATCAAGGTAA
AGCATTCGTTATGGTATCTCTGACAGCAATCGAATCTTAGTCGTCTCTAG
GAGACAAAGTCGATATTTTTTAAATTAAGGTCATTCCTTCCCAGTCAGCT
TGTTAGTAGACAAATGCCATAGCACATGCAAAGGCAACACCTTCTCTTCC
CTGGGAAAAGTTGAAGATTCCTTTCTAGTCTTGGGTCGAACGACTTTATA
TCATTGGTACAGGCTAGAGCAAAGGCCATCGTGACGTCACTCGTACTGGC
GAATTTTTTCCCTATACTTTAGCTCCAGTTTAAACGGCCGACATTTAGTC
CCGTCAATACACGGGTTTCGAATTAAATTTTTGCTTAGCTTTAGCTTTGA
TCCCATGTAAATTTGCACGAAAAATATCAAGTAAACTGAACGAAAATTGG
CCGTGTATCAAGCAATTTTAGCTCATTTTTCCATTTTGAAAGACTTTATG
GGTCATTATGAAAACAAAAAACATTAAAATAAAAAGTCAATCGTTTAATC
ATATTTCTTTTATTGAATTTAAAATAGAAAAACATCTTTTGAANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCCTTTTATAAGGCATTTCCCCTTATCGCTCCTTTTATTTACTT
GATTTTTTCTCTCGCGCCAGATTTAATTCGAAACCCGTGTATTCTAATTG
CAAATTAAAGTTGGCAGAAGGTTGGCTGTCTAAAGTCAATACATTGCCCA
CCTTTGACGTCAGCGCAATGTGTTCTTTCAATCTTTTCCAAAAATTTTAA
TTGCCAACTTTTTGATCACTTTTTGTCTACTCTTGCAACTAGAATAGGCC
TACGGTAAAAAGTTGGTCGTCTAAACTAGAGCTTATTTATATTAATATGT
TGTTTTCACTTTACAGGAATGTACTTTCAATAAAAAACACTCCACGACAT
CTTTATTGGTCTCTGTCAAAACGAGTGCACGTATTCATGAAGATCCATGT
TCACTTTGTTGTGCAAGATATTATGTCACTTTCAATGGACACGAATGCTC
TCCAGTGCCGATAGACCAAGCAATTACACTCAACGATAGTAAAGACAATT
GGGATTGGATCCCTTTCACAATTCGAGGTATCTGTAAACTCAACCATTAT
TCTGGTAATATTAAAGTGGGTTTAAATGTTGGACAATGCGGTTCAAAAGC
GTCTGTCGACCCAGACACAGGCAATGGTGATTTCGTCACCAGCAGTATAA
TTATAGAAGAGGTCGAAAATGTCAAGCTTTACATTCTTTAGAAGCTTCAA
ACCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032011XLOC_032011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050548-exon-scaffold_179-1575043694:334677..335396TCONS_00050548-exon-scaffold_179-1575043694:334677..335396Clytia hemisphaericaexon
TCONS_00050548-exon-scaffold_179-1575043694:333700..334142TCONS_00050548-exon-scaffold_179-1575043694:333700..334142Clytia hemisphaericaexon
TCONS_00050548-exon-scaffold_179-1575043694:333039..333105TCONS_00050548-exon-scaffold_179-1575043694:333039..333105Clytia hemisphaericaexon
TCONS_00050548-exon-scaffold_179-1575043694:330934..331110TCONS_00050548-exon-scaffold_179-1575043694:330934..331110Clytia hemisphaericaexon
TCONS_00050548-exon-scaffold_179-1575043694:330601..330665TCONS_00050548-exon-scaffold_179-1575043694:330601..330665Clytia hemisphaericaexon
TCONS_00050548-exon-scaffold_179-1575043694:329242..329630TCONS_00050548-exon-scaffold_179-1575043694:329242..329630Clytia hemisphaericaexon
TCONS_00050548-exon-scaffold_179-1510915933:334677..335396TCONS_00050548-exon-scaffold_179-1510915933:334677..335396Clytia hemisphaericaexon
TCONS_00050548-exon-scaffold_179-1510915933:333700..334142TCONS_00050548-exon-scaffold_179-1510915933:333700..334142Clytia hemisphaericaexon
TCONS_00050548-exon-scaffold_179-1510915933:333039..333105TCONS_00050548-exon-scaffold_179-1510915933:333039..333105Clytia hemisphaericaexon
TCONS_00050548-exon-scaffold_179-1510915933:330934..331110TCONS_00050548-exon-scaffold_179-1510915933:330934..331110Clytia hemisphaericaexon
TCONS_00050548-exon-scaffold_179-1510915933:330601..330665TCONS_00050548-exon-scaffold_179-1510915933:330601..330665Clytia hemisphaericaexon
TCONS_00050548-exon-scaffold_179-1510915933:329242..329630TCONS_00050548-exon-scaffold_179-1510915933:329242..329630Clytia hemisphaericaexon
TCONS_00050548-exon-scaffold_179-1491911889:334677..335396TCONS_00050548-exon-scaffold_179-1491911889:334677..335396Clytia hemisphaericaexon
TCONS_00050548-exon-scaffold_179-1491911889:333700..334142TCONS_00050548-exon-scaffold_179-1491911889:333700..334142Clytia hemisphaericaexon
TCONS_00050548-exon-scaffold_179-1491911889:333039..333105TCONS_00050548-exon-scaffold_179-1491911889:333039..333105Clytia hemisphaericaexon
TCONS_00050548-exon-scaffold_179-1491911889:330934..331110TCONS_00050548-exon-scaffold_179-1491911889:330934..331110Clytia hemisphaericaexon
TCONS_00050548-exon-scaffold_179-1491911889:330601..330665TCONS_00050548-exon-scaffold_179-1491911889:330601..330665Clytia hemisphaericaexon
TCONS_00050548-exon-scaffold_179-1491911889:329242..329630TCONS_00050548-exon-scaffold_179-1491911889:329242..329630Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:329242..335396 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.043676	0	0	0	0	0.525789	0.335653	4.07454	3.88635	0.457702	1.7083	0.996863	0.811909	0.374757	0.31639	0	0.341076	7.24617	8.05806	0	0	0.415761	0.266535	0.528503	0.0979689	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top