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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050551 ID=TCONS_00050551|Name=TCONS_00050551|organism=Clytia hemisphaerica|type=transcript|length=3209bp
GTTAGATTTACCGTTGTCCTTGGTGACCGAAGATTCTCCGAAACAACTGA
TAATGTAGCTGAGCCAGTGGAAAGAAAAAGACGTCGACTGTCTAGCCCTG
ATACATCAGTGTCACCTGCTGATCTTTTTGGAAAGGAATGCCAATTATGC
GGTAAAGAACGGGTTCAAGTAAAAGGAAGTAGAATTAAACCACACAAAAT
TCTAACAAGAGTGGCAGAGGCAGCCATCAAGAACGCAGCAAAGTCGAAAG
ATCCTGTGCACTATTTCGACATTGTAAATGTTGACCTTGTTACCAAGGAC
TACAAAGTGCACAACTCGTGTTATAAAAGATTTGTTAAACCCACAACCGT
TGcgacaaaatcaaacaaatcgTCGACTTCATCAGCCAGTTCAACATCAA
ATGGCAACGAGGAAAAAATAGGATGTCCCTCATATGAAACTTCCAACTTC
GCTGAAGTAAAGGAGTTCGTTTCCGATGTAATCTTGGGTGATCAACGTGC
TGTATCAATTGCTTCCTTACACGAAATTTATGGATTAGGGATAGgtgacT
CCCGCTATCGAAGCAAGTTGAAGCAACGTCTTAAAGCAGAATTTTCCGAT
AAAATATGCTTCCTATCATCTGAAGATAATAAGCCTGAAATAGTGGTCGC
TACAGAATCGCTGACGTCGACAAGTCGCCTTTACCACGACCCTGAGCGAA
TCGTTTCGAAAGCAGGAGAGATAATCCAAGAAGctattcaacaaaaattt
aaagataCACCAGAGCTTACATGGCCCCCTGATCCTGACGTTATCAATAG
CCAGACATTCAAACCACCGAATATTCTATTAAAACTCATCAAAACTATAT
TGACCACGTCCAAAAATAGAGCTTCCAGATCAATGTCAATCGATCGGCTG
ACTCATTCCATTGCAGAGGATATTGTATTTTGTTGCATGAAAGGGAAAGT
GTTCCAAACTAAACACTTGCTTCTTGGGCTCGGCCTGCACAATTTAACCG
GATCGCGTATGGTGATTGATCTTCTTAATCGACTTGGGCATTCCATAAGC
TACAATAGTGTTTGCGACATAGAAACTGCACAAGCTGAAGCGGCTCAAGA
GGCAGCAAAATCAACCTCTGTGTTGCCATACCAACCAAGCTCCATCACAG
CTTTGTTTGCCCATTATTGGATTGACAATTTCGATATAAAAACGGACAAA
GAAATAGGAGAACGTTCCATACACACGACCCATATGATGGCTTTTCAAAA
CATCAAACCATCAGACAATGTCAGAAAGACACCAGCCTTATCTGTTCCAA
AGCCCAAGAGTCGTAAGATATTCGTTGATGATTTAAATGTTGGAAGCATC
ACTATCGAAAGGAAAAAAGATCCATTGATCAATTTTCAACAACAACCTGA
CTTATGTGACAGCTCATCTTTCGACCTCCTTTGGCTCGTATTGCGATATT
AGTGTAACACTAATCAGCAGATAGCAGCATTCAAGGGCTGGAATCTCAAG
CAGAACAtggaaaattcaaaagaaaaacctATCAAGACCACTGAGACATA
CCTCCCGCCTATTAATTCCAAAGTGACCGAGTTTAGAACAATCTTACAAT
ATCTTCAGTATCTTCAAAATCTAAGCACAACAATGAATATGAAATACGTT
CATGTTACGATGGATGTCGGAGCTGCCATCAACTGCTATCTAATGTTATG
GAACAATCcagatttattcaaaaatattctagTTCATCTTGGTGGTTTCC
acttcttgaaagaaaattttcagATACTTGGTGACTTCGTGAGAGGCACT
GGCTTCAAAGACATCATTTTTGAATCAGACCTCTGTCGTATGGGAAGTCT
TGAGGGCGTTTTGGCAGGATCTCACTACAATCGTGCATGGGTCATTCACG
ATGCATTCTCAGAGGCACTTTAGAGATTACTGCTCAGACGTTTTCTATTT
GACAAAAGTCCTCACATTCCTCACGCCTTGAGAGCAGTTAACTTTGAAAT
GTCAAAGCTAGGTGACAAATCTTCCGAAGGCTTAGATACCTTTTTCAAGA
AGTATATATCCTATCGTAAAGAAGTTTCAACAGGAACGATCGGAAACACA
GCAAGATTCTGGATGATCTACCTCGATCTCATTAGAGCGCAAACGATGGC
CCATACTGCCATCCAGGAGAACGACTGGAAGTCTCTCATGCACTGTTGGA
AGGAATTCCTGCCGATGTACTTTATTCTAAACAAACGGAACTACGCAAGG
TGGAGTCAAAGGATTTGCGTCCGATCAGATGAACGTACGAAAATGGTGCC
TTAATCGCCCTAAGCAAGCGGACGTCATGCGAAGACTTAAAGATCTATGC
GGGCTGGATGGAAAAGATACACAATACAAACCACTTCGAAAGTCTCAAGT
TGCCAAGTCAGAAAAGTACGTTCAGGCCGTGACCGGGGTTTTGGATGAAA
GGTTCCTGAATCCTTTTGGTGCTGATACCGACAAAGAAGAATGTGTTTAC
AACCTGAGTTCTGGTTTGCCGTTCAAAGGAGATGCAGATGATCTACTAAA
TATTAGAAAAAATGGCGAGGAGCTGTATAAAGATTTCAGAACTCAACGCT
TACGCTCTAATGAAAAATTGATTCATGCCAGGCTACCGAAACAAAAACCA
ACATTGTTTAGCCAAAcgctaaaaaaaacaaagacaaagaAAAGCAATTC
ATCTGAAGTCATAAAGGCAAACCAAAACATCTTAGGGAAACTTCTAACAC
TATCATCAATTATGAAGCAACCAATCGATTTTGAAAAGGCGTTATCATAC
CCACTTTATGATGTACCACTCAGTTTAGCTTTTCCCGATGGTACAAAGAG
GTCAAACCAGAAAAGTCTCTTGCTCGATATCATCAAGGCAACAAACTCAA
GACAAACTGAAAGCGAAGGACAAAACGCTGGCAGAAAGAAAGATTACCAC
TCTCATCGTCGATATGATTGCCCACTATCGAGTGATCTCGCAAAACCTCC
CAGAGACGTTCGAAGAATGGATCAAAAAATTTCTGAGTACAATCCATAAC
GACGAGAGGTACGAGCGCATTGATATTGTAGCCGACACGTACAGATCTTT
CAGCATCAAATCTGGGGAACGCGCAAAGAGAGGGTCGTCAGACAGAATTT
TGATGAAGTCAGTAAAAGGAAAAGTCCCGAGAGACATTgacaactttttt
aaaaatgat Run BLAST on NCBI transcript from alignment at scaffold_179:421355..425356- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050551 ID=TCONS_00050551|Name=TCONS_00050551|organism=Clytia hemisphaerica|type=transcript|length=4002bp|location=Sequence derived from alignment at scaffold_179:421355..425356- (Clytia hemisphaerica)
GTTAGATTTACCGTTGTCCTTGGTGACCGAAGATTCTCCGAAACAACTGA
TAATGTAGCTGAGCCAGTGGAAAGAAAAAGACGTCGACTGTCTAGCCCTG
ATACATCAGTGTCACCTGCTGATCTTTTTGGAAAGGAATGCCAATTATGC
GGTAAAGAACGGGTTCAAGTAAAAGGAAGTAGAATTAAACCACACAAAAT
TCTAACAAGAGTGGCAGAGGCAGCCATCAAGAACGCAGCAAAGTCGAAAG
ATCCTGTGCACTATTTCGACATTGTAAATGTTGACCTTGTTACCAAGGAC
TACAAAGTGCACAACTCGTGTTATAAAAGATTTGTTAAACCCACAACCGT
TGCGACAAAATCAAACAAATCGTCGACTTCATCAGCCAGTTCAACATCAA
ATGGCAACGAGGAAAAAATAGGATGTCCCTCATATGAAACTTCCAACTTC
GCTGAAGTAAAGGAGTTCGTTTCCGATGTAATCTTGGGTGATCAACGTGC
TGTATCAATTGCTTCCTTACACGAAATTTATGGATTAGGGATAGGTAAAT
ATTTGCGTACTTTTCTAGAAAGTTCTAGAAAAGATATTAAAATTTTGAAA
TCGAATCTTTATTTTCAAATTTCACGAGATTTTCTGGTATCTTTGACTCT
ATTTATTGCTCACACCTTTAAGAATATTTTCAATACTCAGAACTCCTTGT
GTAAAGTTCGATTGACATTGTCAATTGTCTTTTTTTTTAAAGGTGACTCC
CGCTATCGAAGCAAGTTGAAGCAACGTCTTAAAGCAGAATTTTCCGATAA
AATATGCTTCCTATCATCTGAAGATAATAAGCCTGAAATAGTGGTCGCTA
CAGAATCGCTGACGTCGACAAGTCGCCTTTACCACGACCCTGAGCGAATC
GTTTCGAAAGCAGGAGAGATAATCCAAGAAGCTATTCAACAAAAATTTAA
AGATACACCAGAGCTTACATGGCCCCCTGATCCTGACGTTATCAATAGCC
AGACATTCAAACCACCGAATATTCTATTAAAACTCATCAAAACTATATTG
ACCACGTCCAAAAATAGAGCTTCCAGATCAATGTCAATCGATCGGCTGAC
TCATTCCATTGCAGAGGATATTGTATTTTGTTGCATGAAAGGGAAAGTGT
TCCAAACTAAACACTTGCTTCTTGGGCTCGGCCTGCACAATTTAACCGGA
TCGCGTATGGTGATTGATCTTCTTAATCGACTTGGGCATTCCATAAGCTA
CAATAGTGTTTGCGACATAGAAACTGCACAAGCTGAAGCGGCTCAAGAGG
CAGCAAAATCAACCTCTGTGTTGCCATACCAACCAAGCTCCATCACAGCT
TTGTTTGCCCATTATTGGATTGACAATTTCGATATAAAAACGGACAAAGA
AATAGGAGAACGTTCCATACACACGACCCATATGATGGCTTTTCAAAACA
TCAAACCATCAGACAATGTCAGAAAGACACCAGCCTTATCTGTTCCAAAG
CCCAAGAGTCGTAAGATATTCGTTGATGATTTAAATGTTGGAAGCATCAC
TATCGAAAGGAAAAAAGATCCATTGATCAATTTTCAACAACAACCTGACT
TATGTGACAGCTCATCTTTCGACCTCCTTTGGCTCGTATTGCGATATTAG
TGTAACACTAATCAGCAGATAGCAGCATTCAAGGGCTGGAATCTCAAGCA
GAACATGGAAAATTCAAAAGAAAAACCTATCAAGACCACTGAGACATACC
TCCCGCCTATTAATTCCAAAGTGACCGAGTTTAGAACAATCTTACAATAT
CTTCAGTATCTTCAAAATCTAAGCACAACAATGAATATGAAATACGTTCA
TGTTACGATGGATGTCGGAGCTGCCATCAACTGCTATCTAATGTTATGGA
ACAATCCAGATTTATTCAAAAATATTCTAGTTCATCTTGGTGGTTTCCAC
TTCTTGAAAGAAAATTTTCAGGTATGATTATTTCTTTTCAACTTATTAAA
CTTTCTTGTACTGTCATAACATTTTAAAGGTTTTGAGCATTCGCACATTT
CTATCCTTGTTTCACTTCGAATTTCATTTCACTTTAAGATACTTGGTGAC
TTCGTGAGAGGCACTGGCTTCAAAGACATCATTTTTGAATCAGACCTCTG
TCGTATGGGAAGTCTTGAGGGCGTTTTGGCAGGATCTCACTACAATCGTG
CATGGGTCATTCACGATGCATTCTCAGAGGCACTTTAGAGATTACTGCTC
AGACGTTTTCTATTTGACAAAAGTCCTCACATTCCTCACGCCTTGAGAGC
AGTTAACTTTGAAATGTCAAAGCTAGGTGACAAATCTTCCGAAGGCTTAG
ATACCTTTTTCAAGAAGTATATATCCTATCGTAAAGAAGTTTCAACAGGA
ACGATCGGAAACACAGCAAGATTCTGGATGATCTACCTCGATCTCATTAG
AGCGCAAACGATGGCCCATACTGCCATCCAGGAGAACGACTGGAAGTCTC
TCATGCACTGTTGGAAGGAATTCCTGCCGATGTACTTTATTCTAAACAAA
CGGAACTACGCAAGGTATGATAATCAATAAATTTGCATTAAATGTATCAT
GAACAAATCAATCAGCCTAACAACAAATTGATGACTAATAGGCTCAATTC
TTTTTATGAAAAGGAAGGTTTAGGTTACCATCATGATATACTATACTGAT
TTTGTATTTTTGTATTAATCTTTGATACACAACAGGTACGGGGCTTATTA
CTACGAAAATATGACGAATCTCAAATTAAACTATCCTGGTGCAGAGAACG
ATTTATCACTAAACGGCATATCGGTTCAAGCGCAAAGTAACTACCCCCAT
AATGACTGCCGCAGATCCGAAAGGGGAGCAGACAATTAATAGAGATGCCA
AAACTACAGGTGAATTTAGAAATGAATTTGAACTGTAAATGTAACATTCT
AGAAAAGTATCGAAATACCTTTTGCGTTGGCAATACTGAAGGACATAGGA
CCTTTTTTGCTTTATACCAAATAAATCTGTTCAAAATTATAGGTGGAGTC
AAAGGATTTGCGTCCGATCAGATGAACGTACGAAAATGGTGCCTTAATCG
CCCTAAGCAAGCGGACGTCATGCGAAGACTTAAAGATCTATGCGGGCTGG
ATGGAAAAGATACACAATACAAACCACTTCGAAAGTCTCAAGTTGCCAAG
TCAGAAAAGTACGTTCAGGCCGTGACCGGGGTTTTGGATGAAAGGTTCCT
GAATCCTTTTGGTGCTGATACCGACAAAGAAGAATGTGTTTACAACCTGA
GTTCTGGTTTGCCGTTCAAAGGAGATGCAGATGATCTACTAAATATTAGA
AAAAATGGCGAGGAGCTGTATAAAGATTTCAGAACTCAACGCTTACGCTC
TAATGAAAAATTGATTCATGCCAGGCTACCGAAACAAAAACCAACATTGT
TTAGCCAAACGCTAAAAAAAACAAAGACAAAGAAAAGCAATTCATCTGAA
GTCATAAAGGCAAACCAAAACATCTTAGGGAAACTTCTAACACTATCATC
AATTATGAAGCAACCAATCGATTTTGAAAAGGCGTTATCATACCCACTTT
ATGATGTACCACTCAGTTTAGCTTTTCCCGATGGTACAAAGAGGTCAAAC
CAGAAAAGTCTCTTGCTCGATATCATCAAGGCAACAAACTCAAGACAAAC
TGAAAGCGAAGGACAAAACGCTGGCAGAAAGAAAGATTACCACTCTCATC
GTCGATATGATTGCCCACTATCGAGTGATCTCGCAAAACCTCCCAGAGAC
GTTCGAAGAATGGATCAAAAAATTTCTGAGTACAATCCATAACGACGAGA
GGTACGAGCGCATTGATATTGTAGCCGACACGTACAGATCTTTCAGCATC
AAATCTGGGGAACGCGCAAAGAGAGGGTCGTCAGACAGAATTTTGATGAA
GTCAGTAAAAGGAAAAGTCCCGAGAGACATTGACAACTTTTTTAAAAATG
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050551-exon-scaffold_179-1575043694:424813..425356 | TCONS_00050551-exon-scaffold_179-1575043694:424813..425356 | Clytia hemisphaerica | exon |
| TCONS_00050551-exon-scaffold_179-1575043694:423386..424614 | TCONS_00050551-exon-scaffold_179-1575043694:423386..424614 | Clytia hemisphaerica | exon |
| TCONS_00050551-exon-scaffold_179-1575043694:422793..423268 | TCONS_00050551-exon-scaffold_179-1575043694:422793..423268 | Clytia hemisphaerica | exon |
| TCONS_00050551-exon-scaffold_179-1575043694:421355..422314 | TCONS_00050551-exon-scaffold_179-1575043694:421355..422314 | Clytia hemisphaerica | exon |
| TCONS_00050551-exon-scaffold_179-1510915933:424813..425356 | TCONS_00050551-exon-scaffold_179-1510915933:424813..425356 | Clytia hemisphaerica | exon |
| TCONS_00050551-exon-scaffold_179-1510915933:423386..424614 | TCONS_00050551-exon-scaffold_179-1510915933:423386..424614 | Clytia hemisphaerica | exon |
| TCONS_00050551-exon-scaffold_179-1510915933:422793..423268 | TCONS_00050551-exon-scaffold_179-1510915933:422793..423268 | Clytia hemisphaerica | exon |
| TCONS_00050551-exon-scaffold_179-1510915933:421355..422314 | TCONS_00050551-exon-scaffold_179-1510915933:421355..422314 | Clytia hemisphaerica | exon |
| TCONS_00050551-exon-scaffold_179-1491911889:424813..425356 | TCONS_00050551-exon-scaffold_179-1491911889:424813..425356 | Clytia hemisphaerica | exon |
| TCONS_00050551-exon-scaffold_179-1491911889:423386..424614 | TCONS_00050551-exon-scaffold_179-1491911889:423386..424614 | Clytia hemisphaerica | exon |
| TCONS_00050551-exon-scaffold_179-1491911889:422793..423268 | TCONS_00050551-exon-scaffold_179-1491911889:422793..423268 | Clytia hemisphaerica | exon |
| TCONS_00050551-exon-scaffold_179-1491911889:421355..422314 | TCONS_00050551-exon-scaffold_179-1491911889:421355..422314 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:421355..425356 - |
Blast
The following BLAST results are available for this feature:
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