TCONS_00050554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050554
Unique NameTCONS_00050554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050554 ID=TCONS_00050554|Name=TCONS_00050554|organism=Clytia hemisphaerica|type=transcript|length=1318bp
CACTCCTGCTGTTCCCACAAAGTATTAGTTTCATTGATTGTTATGATGTG
gaCGAAGAGTCACAGCCTGTTAGCGgaatgaaagaagaaaatgagAAGAA
AAGCTATGTTTGTGACGCAGGAGCTATTTtACTCTCCTTTACGATATTGA
TTGGTGCTTTTGCAATCCCCATCGCTATGATTGTTATTGGCACTGGTGGT
TTGAATGAATGTCCAGCTGAAAAGATGATTCCCATATACCTGGTTGTCGG
GGGAATCACCTGTTTACTTATCCTCCCCCTTACCATCATTATGAAACTGT
TTCAATCATGTGTCAACAAAGAAGGCCCTATGGGAATCCTCTTCAAATGT
TACGATGGCCTCGTCATGAATTGTCTAGCCGTGTTCTTCCTTGCTTGGTT
TATCTGTGGTAATGTTTGGGTTTACCGCACTTCGGATGCGGAATTCACCA
ACACAGCGTCACCACAATATTGTGATGAACTGACATACAAGTTTGCATAT
TGGGTGATCATTGCTACTTACGTTTGTTCAGTATTGAGTTGTATTTTGAC
GGCGTGcatcagaaaacgcgtgtcgtACGATGATGTGAAATAAATACGGA
CACCCACATGACAAACCTAAGGCCTTAATTGGACTGGATTGGGTTTGAAT
ATACTAAGAGGGGCCTGAACCCCTTTGAATTTACGCGGCGACGAATAACG
CCAAATGACGGTGTTCGTTCGTTTGCATTCAAATGTTTGAAGTCGTTACC
AGTGCCTAACGATCTTGAACGCTTCCACTCTTCATGGTGTCGTTAACGCA
AGGATTAATAGATGTTTGACTTCATTTCAAGATGTTTTGTGTAAATAATT
CATAACTGctgtattttttatttggtatcatatctgtattttttatttca
tctttTTGGTTACTCTATTTATCTATTTTTATTCAGACGGATATTaggta
ttttattttatactattttgtttttatatactATATCTCAAAGTCGTTTT
CAttaaaggaattatacggtgttatatacacccgactcgtctgaaaatga
tgtcagcaaaattttaataaaagagtcctttcaaatttgtaaataaaagg
aagaaaaaaatcttgctccacatttttctttattcattacaaaagattct
atttatttcaatctgctgaatcaacatacattataactatgtaaaaggtc
aatggctttaatTTTTATGATATACGACTTATAAATACATTGAATCAAAT
TGTATTGATCATAGACTTTTGAATCTATTTTGACAAAGGactttaatttt
gaaacatgactttttttc
Run BLAST on NCBI

transcript from alignment at scaffold_179:441618..445997-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050554 ID=TCONS_00050554|Name=TCONS_00050554|organism=Clytia hemisphaerica|type=transcript|length=4380bp|location=Sequence derived from alignment at scaffold_179:441618..445997- (Clytia hemisphaerica)
CACTCCTGCTGTTCCCACAAAGTATTAGTTTCATTGATTGTTATGATGTG
GTGAGTATGTGAATTGTGAGTGTAATTTTTCTTAAGAATTTGAGTCAGTT
TTTTAATAATTAATGACTGTCTTCTGCTTACAGTGGGTACCCGGATCTGT
ATTGAGCGGTTTAGGAATCGTCTCGTTAGAACCGTCTTACACTATAGTTT
TAATGATTAGGAACTTTTCAACCCTCGCTTCATGAGACTCGATATATATT
AGACGATGCTATCGTTCGTGTATTATATTATAATGATATTACGATATAGC
ATAGTTGTATATTATAAAACGTAGTATGTTGCGCGGCGGAAAATAGAGGC
TGTGTCTAAGGTATTAAGCCCCTCCGACTATTTTTCGCCTGCGCGGTCAA
AATTTCCACCCGACTGCTAATTTGCGTGTTTGAGGTTATTCTTTGTCATT
CGAATTCGTCTTAGACTATAGCATAGTCTAGATATATACACAAGCAGACG
CAAGTCACTTACTACTTCTTACAACCAAATTATGGCAGATAAACTTTCTA
TCTAACCTTTTAAATCTGTTTGCGGCTTTCAAACTTCTGAATGTGGTTTT
GGTAAATATAGGGTTTCTTTTACACTGTAACTTGTTTCTTTTGGTTCATC
TAGGGTGTCTTTTATATATGCCTTATTACATTACTTATTCTCTAACCGCA
TATCAAGTCGATAAAAAAAACATATAAAAAAAGCCACTATAAAGCTGTTT
CATTAACATTCATAATTTTTCATAACAAATCATTTTTAAATATATTTTAA
AAGGTGACGACGCTCTTGGTGTTACAAAATTGATCGTTAAGATAAGCCTT
GTGCTAGATTTATACAGAATTTGTTGGCGATTTTATGATGATTAAGAATT
AGCGCAAAATAGACTTAAGTAGAGGTTAAGTGACCTAAACTAGATCTAAG
AACTTTTGCTAATTTACTGGAGGATTGTAAAGGACAAGGCGTCAATTTAT
ATTCCATTCGATGGAGAATTTACCAAGAGTAAACATGGAAATTATTTCAT
CCAACCTAAAAGATGACGAAATATGTGATTTTCAAAGGCTTGAAAAATGT
GTAGGTACATCTCATCCTATCCTCTGGGCTATACAAGTCTCCCCACTTAC
AGGCTAAAAGTCTGATAAATAAAGAGCGTTTTGACATTTTAACTAACCCT
TGACTTCATAAGTCTAACTGGCACTTCATTTCTCATCATTGTTTTCAAAT
TTTCTTTTTAGGACGAAGAGTCACAGCCTGTTAGCGGTATGAATTGTTCT
TCTTATTGAATTAAGAAATATAACTTCTGTCAAGCTTTCTTCTTTCTATC
AGCATGTTTAGTGGCAGATCAGTATATGGGCTTTTCCTGAAAAAAGCTTT
GAACATCATTGGGGGTGGAGGATATAACATTTTTTGGAAATTTACCCCCC
GGACATTGTGACTTTTGACCCTCCGGACAGCAGGTCTAACCCCCCGAGCA
AGCATTAGTTTACCCCCCTGGACACTCAAAATTACCCTGAAACAGAGCAA
AATTACCCCCAAATAGAGCAAGGTCAACCCCCAGACAAGGCAAATTTAGT
AGGTTTTTCACTACCCCCCGGACACTATATCCTCCACCCCCATGTACGAA
CATTTTCTGGAAGAGCCCATATGTACCTCCGCCTTATTTGGTTTCATCAA
CAATGCAAACTGTACCAGAGAGCATGCATATTGAATAATTTAGAATCTGC
ACCTTAAAAGCCCTCTTGGTCTGGTACAAACTGAAAATACAATTAATTCA
AAGTTACTAGAGAAAATGAAAGTTATCCAATGTTTGCATCCTCTCAAAGC
TTGAAGATTTTTTAGTACGACGTGTAATATCATTGAAGTTGAAAACATAC
TCTTAAACGTTTTGATAATTTTATTTTCAATTTCTTATAGGAATGAAAGA
AGAAAATGAGAAGAAAAGCTATGTTTGTGACGCAGGAGCTATTTGTATGT
TGAGTTAATTTAATACCATTTTTAAGAACCTTTTCTGTTCCATTCTCAAA
TCAAAAAGTATTTAATCCTACAGTGTCATCGCTGTGTGAAAAATTTTTCG
AAAAATATTTATTTTTATACATCTCAAAACATTTTTCTTATTGACTTTCA
GTGCTACTTTTTATTATACTTTTTGGTTAGGTATTTCTAAAGTCGATTGG
TTTTAAACTTCGGGCTATATCTACTTATCTGATATTCCGATGACGGATTG
GCAGCCGCCCACACTAAAGCTCTAAAGAAGGGGGGATTTTTCACCGGAGA
GGAATGATAATCGGCCTTTGATGTGCCATATCCCCAGTCGGGTTCAATTA
TCCTTGCTAGTAAACCCTAAATATATTTCGGTTGGGCCCGCCAAAAAGTT
GGCCATTTTTGTTGTCACGGTTACATATTATTTTGTGAAGTCGTAAACAA
ATTTTTGTCATAATATAACTTTACTTCTCTTTCTTTTTTAGTACTCTCCT
TTACGATATTGATTGGTGCTTTTGCAATCCCCATCGCTATGATTGTTATT
GGTAAGCTTAGCTGTTTTCTTTCTTAGCTGTAACATCGGCGATTTATCAT
ACCTTATCGGAGGAAAAAGCCGATGGAACAATTTGGTCACCCGGCTCTTG
GAACGTTTTGGTCACTTTTGCACAACTGCTTTTTAAATAAGCCGTTTTTA
GCCACAAGGGAAACCTCAAGTTAGGTGTTTTATAAGTATATTTTGCAAGC
AGTCNTTGAAAAATTCTTAAACCTAAAATTTACCTTTTACTCTTTTGTGC
TTAATTGTAGGGGGATTACTCTCGGGTCCCTAATAAACGTACATGTACGT
TTATTAATTTTGACAAAAAATTGTGGCCAATTTCAAGTGCCTACTTTTGT
CTGTGATGCTAAATATCCATCTTCGACTATTGAGGCTTTATCTACTCGCT
GAAAGAACGCAAAATACCCATTATTTACCCCCTAACCTCAGTGAAAAGAT
CATTCAATTAGGTTCTTATGCCTCCATTTTTGGCCCTGTATGTTTATTCG
CTACTGTACGTTTATTAGGGACCCGAGAGTAAAAATCTTTGAAAAGTGTT
AAAAAAATAACACTTGTTCAATTAGATTCCAACTTTTAATTCGTTTTCCC
ATATTATATCCAACACTCTACTATATTTTGACATGTTGATACTGTTGTGC
CTTTTACCTTCATTGCCTGCACTTTCACAAGTAATAATATTTCAATTAAA
GGCACTGGTGGTTTGAATGAATGTCCAGCTGAAAAGATGATTCCCATATA
CCTGGTTGTCGGGGGAATCACCTGTTTACTTATCCTCCCCCTTACCATCA
TTATGAAACTGTTTCAATCATGTGTCAACAAAGAAGGCCCTATGGGAATC
CTCTTCAAATGTTACGATGGCCTCGTCATGAATTGTCTAGCCGTGTTCTT
CCTTGCTTGGTTTATCTGTGGTAATGTTTGGGTTTACCGCACTTCGGATG
CGGAATTCACCAACACAGCGTCACCACAATATTGTGATGAACTGACATAC
AAGTTTGCATATTGGGTGATCATTGCTACTTACGTTTGTTCAGTATTGAG
TTGTATTTTGACGGCGTGCATCAGAAAACGCGTGTCGTACGATGATGTGA
AATAAATACGGACACCCACATGACAAACCTAAGGCCTTAATTGGACTGGA
TTGGGTTTGAATATACTAAGAGGGGCCTGAACCCCTTTGAATTTACGCGG
CGACGAATAACGCCAAATGACGGTGTTCGTTCGTTTGCATTCAAATGTTT
GAAGTCGTTACCAGTGCCTAACGATCTTGAACGCTTCCACTCTTCATGGT
GTCGTTAACGCAAGGATTAATAGATGTTTGACTTCATTTCAAGATGTTTT
GTGTAAATAATTCATAACTGCTGTATTTTTTATTTGGTATCATATCTGTA
TTTTTTATTTCATCTTTTTGGTTACTCTATTTATCTATTTTTATTCAGAC
GGATATTAGGTATTTTATTTTATACTATTTTGTTTTTATATACTATATCT
CAAAGTCGTTTTCATTAAAGGAATTATACGGTGTTATATACACCCGACTC
GTCTGAAAATGATGTCAGCAAAATTTTAATAAAAGAGTCCTTTCAAATTT
GTAAATAAAAGGAAGAAAAAAATCTTGCTCCACATTTTTCTTTATTCATT
ACAAAAGATTCTATTTATTTCAATCTGCTGAATCAACATACATTATAACT
ATGTAAAAGGTCAATGGCTTTAATTTTTATGATATACGACTTATAAATAC
ATTGAATCAAATTGTATTGATCATAGACTTTTGAATCTATTTTGACAAAG
GACTTTAATTTTGAAACATGACTTTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032015XLOC_032015Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050554-exon-scaffold_179-1575043694:445948..445997TCONS_00050554-exon-scaffold_179-1575043694:445948..445997Clytia hemisphaericaexon
TCONS_00050554-exon-scaffold_179-1575043694:444712..444736TCONS_00050554-exon-scaffold_179-1575043694:444712..444736Clytia hemisphaericaexon
TCONS_00050554-exon-scaffold_179-1575043694:444004..444057TCONS_00050554-exon-scaffold_179-1575043694:444004..444057Clytia hemisphaericaexon
TCONS_00050554-exon-scaffold_179-1575043694:443447..443506TCONS_00050554-exon-scaffold_179-1575043694:443447..443506Clytia hemisphaericaexon
TCONS_00050554-exon-scaffold_179-1575043694:441618..442746TCONS_00050554-exon-scaffold_179-1575043694:441618..442746Clytia hemisphaericaexon
TCONS_00050554-exon-scaffold_179-1510915933:445948..445997TCONS_00050554-exon-scaffold_179-1510915933:445948..445997Clytia hemisphaericaexon
TCONS_00050554-exon-scaffold_179-1510915933:444712..444736TCONS_00050554-exon-scaffold_179-1510915933:444712..444736Clytia hemisphaericaexon
TCONS_00050554-exon-scaffold_179-1510915933:444004..444057TCONS_00050554-exon-scaffold_179-1510915933:444004..444057Clytia hemisphaericaexon
TCONS_00050554-exon-scaffold_179-1510915933:443447..443506TCONS_00050554-exon-scaffold_179-1510915933:443447..443506Clytia hemisphaericaexon
TCONS_00050554-exon-scaffold_179-1510915933:441618..442746TCONS_00050554-exon-scaffold_179-1510915933:441618..442746Clytia hemisphaericaexon
TCONS_00050554-exon-scaffold_179-1491911889:445948..445997TCONS_00050554-exon-scaffold_179-1491911889:445948..445997Clytia hemisphaericaexon
TCONS_00050554-exon-scaffold_179-1491911889:444712..444736TCONS_00050554-exon-scaffold_179-1491911889:444712..444736Clytia hemisphaericaexon
TCONS_00050554-exon-scaffold_179-1491911889:444004..444057TCONS_00050554-exon-scaffold_179-1491911889:444004..444057Clytia hemisphaericaexon
TCONS_00050554-exon-scaffold_179-1491911889:443447..443506TCONS_00050554-exon-scaffold_179-1491911889:443447..443506Clytia hemisphaericaexon
TCONS_00050554-exon-scaffold_179-1491911889:441618..442746TCONS_00050554-exon-scaffold_179-1491911889:441618..442746Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:441618..445997 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.81208	0	0	0.0368792	0	1.40191	0	0	0	8.94391	1.85468	0.814505	0.60605	7.62667	3.83726	3.19654	4.63476	10.8625	15.7063	1.73363	1.28974	0	0.870132	2.71891	0	6.00924e-06	4.97403e-08
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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