TCONS_00050561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050561
Unique NameTCONS_00050561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1860

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050561 ID=TCONS_00050561|Name=TCONS_00050561|organism=Clytia hemisphaerica|type=transcript|length=1860bp
TTTGAAATTTAGTGTTAAATTAAAAGATATCATTAAGAAGACATTGATTA
GGATACGATTGACTGTACGATTGCGATTACATTGGAAAAGgttttgcaaa
attaaagaattgATGCTTATTTATTTACAGCAATAAAATACAATGATATG
AAAATATACAAATATGACAAAACGAAGTCCATTTCTTGATTGGGAGCTAT
GCATTTTGTGTCAGGTCGAACAAGCAAATGAGAAACTCATATGTCCAGCA
TCTATCGTCAGGAAGGGGCATGATCCTACTAAATCATACAAAGACCTCTT
GGAGAGTCTCCAACGATTTGCCGAGTTGAGAAGTTTACCTTTCGAAAAGT
TGTATATTTCTGATGAAAACTTTAAGGATCAAAGCATATTTATTATCAAT
AAAGGAAAGTTCCACAAGGCTTGTCAACTAAAGATCAGTAGTTTGAAACT
TGAGAGGTTGGAAAAGTCACAGTCCAAATTAAAGGATACCAAAGATGACA
TACAATTCGAGCAACCGGCGGAACGAAGAAGAAGTGACAGAGTTAACCAG
CCTaacgaaaataagaaaatcgcATGTTTTTTTTGTCACGAAGAAACCGG
GAGATTACATCAAGCGTCTACCTATAAACTGAATAACAGAGTCCTACAAA
TTGCAAAACTTTTGAATGATGTGGAAATAATAAACAAGTTGACTGAAAGA
GACATGATGGCTTGGGAGTCGGTTTACCATTCTGATTGTCTCATCAAGTT
TTACAAAAAAGGGAAGGAAATCGAACAGGTATCAGGAGGCAGCGATGTTG
ATAGCCAGATTTCATGCACTGCTTTTGTCGAGCTAACGATTTACATGTCA
GATTGTGCCGAGGAAGATAAAAGTGCCGTTTTTAAGCTTGACGACTTGAT
AAAGTTTTACGAAAAACGGATATCTGATCTTGGTGGAAGGGTTAACGGAA
AGATTCACTCAACAAGATTCAAAAATAGACTATTAtcacactttgaaaat
cttgtcGAATCGAAAAAGGAAGGAAGGCATGTCTATTTAGTTTTTGATGA
GGAGCTTGGTGCAGTACTCAAGACAGTCTTTGAAAACACTTTAGATGATG
ATGCATTTCTTTTATCAAAAGCTGCTAAAATTTTACGAAGAGAAATCTTT
TCCGAAGATTATCAACCCTTTAAAGGGTCGTTTTCGTCAGACTGCCAAAA
GGAATTTCTTCCTCACTTTGTTAATTCATTTGTCGATACACTCCTTCATG
GTCAAAACTACATCAATACGAGAAGAACTGTTTTGGAGAAAGGTGATAAA
TTAGCTGAACTACCAAAATCGTACTCTGAGGTGACACCAGTTTCATCTTT
CAACAAAAATCCTGAAACAAAGGATTATTCAGGCGTTCAAGACTGCCCCA
TTGATCTAAAGAGCGGCACCCAAGAGAAAAAATGGCTAAATCATGTTGAG
GAGGAGATTCATATCGATGAGGAAACACGATCAAAGAATATGTCATGGTC
AGCATTCAATGCAGCTGAACAAACCGAAGATAGACCAACCGATATCTCCG
TCCTTCTACCACTCTTCCCTGATGATTCAAAATCGATTGCTATGATGAAA
CATGGAATGGACGTTATCAAACAAGCTGTTCAACATCTCAATGGTGATCA
GTCGCCAGTCATTGCCTTTGACCAGCCACTCTTCGCAAACGCTAAACTCG
TCCAATGGAATTGGAAAGAAGAATACGGTGAAGATAAGTTTGTAGCTATG
ATGGGTCCACTGCATATCGAAATGGCATTCATGAAAGTAATCGGTAATTT
TAGGACAGTTTTTTAACTTATTTCCAGGGCTTTTCAGCTCTTACTGTATT
CTGATGTTTA
Run BLAST on NCBI

transcript from alignment at scaffold_179:501568..504010-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050561 ID=TCONS_00050561|Name=TCONS_00050561|organism=Clytia hemisphaerica|type=transcript|length=2443bp|location=Sequence derived from alignment at scaffold_179:501568..504010- (Clytia hemisphaerica)
TTTGAAATTTAGTGTTAAATTAAAAGATATCATTAAGAAGACATTGATTA
GGATACGATTGACTGTACGATTGCGATTACATTGGAAAAGGTTTTGCAAA
ATTAAAGAATTGATGCTTATTTATTTACAGCAATAAAATACAATGATATG
AAAATATACAAATATGACAAAACGAAGTCCATTTCTTGATTGGGAGCTAT
GCATTTTGTGTCAGGTCGAACAAGCAAATGAGAAACTCATATGTCCAGCA
TCTATCGTCAGGAAGGGGCATGATCCTACTAAATCATACAAAGACCTCTT
GGAGAGTCTCCAACGATTTGCCGAGTTGAGAAGTTTACCTTTCGAAAAGT
TGTATATTTCTGATGAAAACTTTAAGGATCAAAGCATATTTATTATCAAT
AAAGGAAAGTTCCACAAGGCTTGTCAACTAAAGATCAGTAGTTTGAAACT
TGAGAGGTTGGAAAAGTCACAGTCCAAATTAAAGGATACCAAAGATGACA
TACAATTCGAGCAACCGGCGGAACGAAGAAGAAGTGACAGAGTTAACCAG
CCTAACGAAAATAAGAAAATCGCATGTTTTTTTTGTCACGAAGAAACCGG
GAGATTACATCAAGCGTCTACCTATAAACTGAATAACAGAGTCCTACAAA
TTGCAAAACTTTTGAATGATGTGGAAATAATAAACAAGTTGACTGAAAGA
GACATGATGGCTTGGGAGTCGGTTTACCATTCTGATTGTCTCATCAAGTT
TTACAAAAAAGGGAAGGAAATCGAACAGGTATCAGGAGGCAGCGATGTTG
ATAGCCAGATTTCATGCACTGCTTTTGTCGAGCTAACGATTTACATGTCA
GATTGTGCCGAGGAAGATAAAAGTGCCGTTTTTAAGCTTGACGACTTGAT
AAAGTTTTACGAAAAACGGATATCTGATCTTGGTGGAAGGGTTAACGGAA
AGATTCACTCAACAAGATTCAAAAATAGACTATTATCACACTTTGAAAAT
CTTGTCGAATCGAAAAAGGAAGGAAGGCATGTCTATTTAGTTTTTGATGA
GGAGCTTGGTGCAGTACTCAAGACAGTCTTTGAAAACACTTTAGATGATG
ATGCATTTCTTTTATCAAAAGCTGCTAAAATTTTACGAAGAGAAATCTTT
TCCGAAGATTATCAACCCTTTAAAGGGTCGTTTTCGTCAGACTGCCAAAA
GGAATTTCTTCCTCACTTTGTTAATTCATTTGTCGATACACTCCTTCATG
GTCAAAACTACATCACGAGTAATGAATATTTGGAACAGAACGTTCTAACC
ATCGCTCAGCTTATCATTCAAAATTCAATCAAACGCGTAAGAAAAGATTC
TACATCGTGTGTTTTCAATAAAAGTAGAGAGTCGCCAATTTCTACATATC
TCGGATTGATGATTCATGCCAAGACTAGAAAGAAAGGGGTCATAGAAGAA
CTCAATGAACTGGGACTTTCAATACCCTACAAGCGTGTCCTTAGCATAAC
GGACTCTCTTAGCGCAACCGTTTTAAAAGAGTATAAGGAAGACAAAGTTG
TATGTCCAAGAGTATTGAAGAAAGATGTGTTCACTGCTGGTGCCTTAGAT
AACTTGGATATCGATCCGTCATCGTCGACATCAAAAGGGTCGTTTCATGG
AACAGCGATATCATTATTCCAAAGGAAAACAAGTCAACATAACGACATCA
ATACGAGAAGAACTGTTTTGGAGAAAGGTGATAAATTAGCTGAACTACCA
AAATCGTACTCTGAGGTGACACCAGTTTCATCTTTCAACAAAAATCCTGA
AACAAAGGATTATTCAGGCGTTCAAGACTGCCCCATTGATCTAAAGAGCG
GCACCCAAGAGAAAAAGTAAGTTTTTAAGAGTTTTTCCAATTTTTTTTCC
AATTTCCAGAATTTCCGGTCTTCATTTTGTGTAAATAGTAGATTTAATTC
ACCAAAGAGCATTCATCGTAAAACACTATACAATTTACCATAATCGAACA
AACATTCATTTCAGATGGCTAAATCATGTTGAGGAGGAGATTCATATCGA
TGAGGAAACACGATCAAAGAATATGTCATGGTCAGCATTCAATGCAGCTG
AACAAACCGAAGATAGACCAACCGATATCTCCGTCCTTCTACCACTCTTC
CCTGATGATTCAAAATCGATTGCTATGATGAAACATGGAATGGACGTTAT
CAAACAAGCTGTTCAACATCTCAATGGTGATCAGTCGCCAGTCATTGCCT
TTGACCAGCCACTCTTCGCAAACGCTAAACTCGTCCAATGGAATTGGAAA
GAAGAATACGGTGAAGATAAGTTTGTAGCTATGATGGGTCCACTGCATAT
CGAAATGGCATTCATGAAAGTAATCGGTAATTTTAGGACAGTTTTTTAAC
TTATTTCCAGGGCTTTTCAGCTCTTACTGTATTCTGATGTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032017XLOC_032017Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050561-exon-scaffold_179-1575043694:502750..504010TCONS_00050561-exon-scaffold_179-1575043694:502750..504010Clytia hemisphaericaexon
TCONS_00050561-exon-scaffold_179-1575043694:502145..502314TCONS_00050561-exon-scaffold_179-1575043694:502145..502314Clytia hemisphaericaexon
TCONS_00050561-exon-scaffold_179-1575043694:501568..501996TCONS_00050561-exon-scaffold_179-1575043694:501568..501996Clytia hemisphaericaexon
TCONS_00050561-exon-scaffold_179-1510915933:502750..504010TCONS_00050561-exon-scaffold_179-1510915933:502750..504010Clytia hemisphaericaexon
TCONS_00050561-exon-scaffold_179-1510915933:502145..502314TCONS_00050561-exon-scaffold_179-1510915933:502145..502314Clytia hemisphaericaexon
TCONS_00050561-exon-scaffold_179-1510915933:501568..501996TCONS_00050561-exon-scaffold_179-1510915933:501568..501996Clytia hemisphaericaexon
TCONS_00050561-exon-scaffold_179-1491911889:502750..504010TCONS_00050561-exon-scaffold_179-1491911889:502750..504010Clytia hemisphaericaexon
TCONS_00050561-exon-scaffold_179-1491911889:502145..502314TCONS_00050561-exon-scaffold_179-1491911889:502145..502314Clytia hemisphaericaexon
TCONS_00050561-exon-scaffold_179-1491911889:501568..501996TCONS_00050561-exon-scaffold_179-1491911889:501568..501996Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:501568..504010 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.190214	0.228189	0.0377596	0.0643587	0	0	0	0	0	0	0	0	0	0	0.091955	0	0.0496685	0.0262379	0.00180429	0.0372625	0	0	0	0	0.0263516	0.0669765	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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