TCONS_00050562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050562
Unique NameTCONS_00050562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050562 ID=TCONS_00050562|Name=TCONS_00050562|organism=Clytia hemisphaerica|type=transcript|length=260bp
taaaaatagaaacaaatGTCACTTTTAAAACTCAATTTAATTTCACGACG
CAGTGGAAAGAAGAGTGACATAATCTTAAGGTTATCATTGCAGTGAAGAA
AGTCTTCAGTGCGCAATCAATCTGCTGACTTATCAAAAAATCTCATTCGA
AAGATGATTGACTGTAAAACAAATGTCTGGCAATTGTCTGGGGAGGGCGA
GACAAATTATTTCACCATTATGAGGGTCTTGGTAAACGTAAAGTAATTGT
TTTGACAAGT
Run BLAST on NCBI

transcript from alignment at scaffold_179:517755..518692-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050562 ID=TCONS_00050562|Name=TCONS_00050562|organism=Clytia hemisphaerica|type=transcript|length=938bp|location=Sequence derived from alignment at scaffold_179:517755..518692- (Clytia hemisphaerica)
TAAAAATAGAAACAAATGTCACTTTTAAAACTCAATTTAATTTCACGACG
CAGTGGAAAGAAGAGTGACATAATCTTAAGGTAGGTTGATCAGTAAGGTG
TGTTGTATTATAATCTCATAATCCTAAGTAATAATTCACTCCCCATTAAG
CCATAGCTTCAATGTCTATCTTTTAAAAGGAAAGCGGTTTAGATTGAAGA
TATTCCACTCACGAGTATCTTTTCAACGGGTACAAATTTTTTCAATTTTC
CATTACGTTTTTATTTTGAGATTGACTTGAATTAAATCAATAAGTTTTGC
TGACTTTGAGATCATACCAGGCTAAAAATTCATTTCAGAAGGTTCATCTA
TTTGAAGCCGGTACTCTAAGGTTCCAAATAAACGGACCCCTTGTTAATTT
TTCGAAAATTTTCCAACCCCCTGGATCTTATTAGGACCCCCCCCCCCGTT
TATCAATTTTTAAGAATATTTTCAGTTTTCAAAGAGCAAGTCCCTTTTTT
GCTCAAAATAGCCCGATTTTAGCCTATATTTACCTTTATTTTGGGTTATC
AGAAGTACAATTTCAACCCCCCCCCCGACAATTAGCCCCTCCCCGTTTAT
CCAAACCTTATTCGAACTGTCCCGTCTATTTGGAAGCTAAGATAAGAGTA
TGGGTTTCTCGACTTTGATTGCACGATCTTGCTACAATACAATGTCGACA
AAATAGTTTTGTGATGGGACGTATGACGGCTGAGTTGACGTTCTTTTAAA
TCTTTCAGGTTATCATTGCAGTGAAGAAAGTCTTCAGTGCGCAATCAATC
TGCTGACTTATCAAAAAATCTCATTCGAAAGATGATTGACTGTAAAACAA
ATGTCTGGCAATTGTCTGGGGAGGGCGAGACAAATTATTTCACCATTATG
AGGGTCTTGGTAAACGTAAAGTAATTGTTTTGACAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032018XLOC_032018Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050562-exon-scaffold_179-1575043694:518613..518692TCONS_00050562-exon-scaffold_179-1575043694:518613..518692Clytia hemisphaericaexon
TCONS_00050562-exon-scaffold_179-1575043694:517755..517934TCONS_00050562-exon-scaffold_179-1575043694:517755..517934Clytia hemisphaericaexon
TCONS_00050562-exon-scaffold_179-1510915933:518613..518692TCONS_00050562-exon-scaffold_179-1510915933:518613..518692Clytia hemisphaericaexon
TCONS_00050562-exon-scaffold_179-1510915933:517755..517934TCONS_00050562-exon-scaffold_179-1510915933:517755..517934Clytia hemisphaericaexon
TCONS_00050562-exon-scaffold_179-1491911889:518613..518692TCONS_00050562-exon-scaffold_179-1491911889:518613..518692Clytia hemisphaericaexon
TCONS_00050562-exon-scaffold_179-1491911889:517755..517934TCONS_00050562-exon-scaffold_179-1491911889:517755..517934Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:517755..518692 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31296	1.92052	1.4866	0	0	1.39915	0	0.790152	1.65961	0	1.99531	0.437213	0	1.81367	1.49109	0	0	1.01024	0	0.730254	1.26945	0.928787	0.752708	2.05296	1.40967	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top