TCONS_00050563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050563
Unique NameTCONS_00050563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4119

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050563 ID=TCONS_00050563|Name=TCONS_00050563|organism=Clytia hemisphaerica|type=transcript|length=4119bp
agaaaagtctAGCTGaaataattaaagaaaaatcacactcttttaaagaa
aattacatagttaaaaatgaaaaatcacagTATGcgatttttttcttaat
tttctctttttaaaactttgctTTTTCAGGTTTACCAGGCAGAGTCCATA
TATCAGAGAAAACGTTGGGATTCCTTGGCGACAACTATACAATAGACAAT
GGCGAGGGAATCGAAAGAGCTGAGAACGACGGTGGAGGTACACTTCAAAC
ATACTTCATCAGTAGCCGAAAGAATGGACAGTCTCATTTCAAACCATGGC
GTAAGGAAAACGAAAGTGCAAAAAACTCATCAAGCAATTTGCAAGAGGTG
ACCGCTTATCGTCATGATAGTCTTGCAAACGTTTTGGAAGGAATGAAAAA
CAAACATAATGGGAATTTCGAGAAACTGGCTGATCCAACAAATGTCCACC
TGCATGATGTCAACACTCCTGATGAGGATCTAGAGAAAGTGTACCTAGCA
AATGAAAATTCAGTCTCACTCTCTCCCACTATCTCACCAACCAAAGGACG
TTCAAAACATATCGCCAAAGCACCTTTACCTTTCCCCAAATTGAGTGCAA
CTTTCAATTTTACTTATGGTATCACACTTAATGAAGCGCTAATGAGAGAT
GCGATGAGAGCTTCCAATGATAACCAGCTGGTCAAACTCATGCAAGAGAA
GAAGATTCAAAAAGAATACTTCTTCAATCCACCATTGAACATCTGGAACC
TTAACTTCACAGATCCGCCTAAGGAAGACCACAACAGAAAGGATTTAGAG
ATGGTACCCCAATACCAAAACATGGAAAAAGATAAACCGTTGATTACCAC
TGAAAGCAAATACAGAGATGAAGGCTTTAAAGGATttaagttgaatccaa
aagtcgTCACATTTGCTTCCCCAAAAGTTCATTTCTTATTCGATCTCATG
ACATGTGCAGTTACCCTAATCATAACCATCATAGCTGGACTGATGTTATT
TTATGACCGTTTGGCAGATCTACATGGTTTCATAGCAGCCATCGTTTTAT
GTGTCATTGCCATGGTTTGTCTACTTGGATTCCAATGCATCAAATTTTCA
CCATCCAGTTTCCCGAAGAGGATTAGTAAATGTGCAGGACCATTGGAATT
GAGCGAAACAGgGAGTGCAGTTGGAGAACATCATGTCGAATACAATGATG
CTAATCATAACAGACGCGCCCCACCGCCCCACCAACGAAAGCCATTCATT
AAACGTCTCTTCTCACCTTGGACGACCGCCCATCTTACTGGTGTCCTCAT
TATGTGTCTACCCGTATTTGTCGTCTTCTCTTTCTATGAAGACTGCAACA
TTACTCAAGGTCCATGGCGTGACTCAGGACTTGAATCATTTACTATGATC
ATAATGGTGGCTTTATTCCATTTCTGTAGTTTTACTCAATTGTCGTACTT
GATGAAAAGTGTTACAGCCGCTATTTGGTGTGTCGTTTTCATATTAATCA
TTATGTTACCTCCTCAATGTGATATTGGTGTTCAATCTACGACAACTCTT
AATGACATTGTCATGGTTGTTGTCCTACAAATTGTTTTGATAATCTGTCT
AAACCGAATCCACGAGAAAGGTGTACGAGCCAATTTCTATGGTGATAAAG
TTGCGGCCGAACAAAAGGATAGTGCCATTGAACAAAAGCAAGTCGCTGAT
TGGCTGATCCAAGATATGTTCCCACGTCACGTATCAACCCAGTTGAAGTA
CACAAAGCATTGTTCCAAAAATTATGATATGGTGGGAGTACTCTTCGCAT
CCATTGTTAATTTCGCGGAATTTTACGAGGAGAATTTTGAAGGTGGTTTA
GAATGTATTCGTGTATTGCATGAATTAGTTGGTGATTTTGATAAAGAACT
CATGAAATATGAAGATATTGAGAAAATAAAGACAGTTTATGGAACTACTT
TTATGGCTGCTTCTGGTTTGAGTTTAAACGAATCGATGAAGATCAGTCAA
GGGCCTCTCAAAGGCCATAAGTACTTCCATCTCAAATCACTAGTTGAATT
TGCTAGAGGAATACAAGAGACTTTGACAGAGTTTAATCAAAATATGCTTG
GATTTAATTTCAAATTACGTTGTGGTTTGAATGCTGGACCTGTTACCGCT
GGAGTCATTGGTACTATGAAACCGCAATATGATGTTTGGGGTGACACCGT
TAACTTGGCCAGTCGTATGGACTCTAATGGTTTAGTTGACCATATCCAAG
TGGACGAGGAATGCATGCAAAAATTAACAGACTTTTATACTTTCAAGTTC
CGTGCAACTTTACCGATCAAAGGAAAAGGTGAACGTAAAGTATACCTTTT
GGTGGAAAAGAAGCCGGAAGCTGGTTTAGTGGACGTCAAAGAATAATCTG
GAAGGTCGGAGATCGATCGCTAAGTGATACTTTGACTGGTTGGACCACCG
ACCAACTACTTCGTAATACTAATCGTCGTCGTACTAACGTTACAAAAGAT
GAAACACACGACTTACGTATTGGTCAAAGAATCAAAGTTTAAATGTTTGG
AATAATGGTGCATTCTTACAGCGTGTCCTGAAAAAAAGCAAGATAATAgc
aatacaaaaaaaataaactgaaaatTCCAATCATCGTCAATTTTTTATGC
TGGAATGCTTtaactaaaatagttttaatctTATGTAAAACCTTGTGACG
CATCAAGAATAGTTTGGTGGATTTAGGTTTTGGTGAGTTCTTTTCCGCTA
ATTTTTAGGACACGCTGTAAAATGATACATTTCATTATCAAATGTTCTTT
TCTGCTAGTTTTCTATTCTTTTTTACATACTGTATATTATatctaaaaat
tgcatttctatGTAGgatttgattttgacttttcCAATACCTCTATGgtg
ttttattgatttttgactttttggctgcTAACATGGCTCTTCCAGCCAAA
TATATGAAACGAGgaagtttttaaagaaatcaTCTTGCTTTTTTTTATGG
TCGTAAGTAGTTTCACTTTCCCTAGAAAATATGTTTGATGATATCATTTG
TTGACAAAATTCTTCAAAGTTGTTTTAGAGAGAAAGGTTGctttttgttg
gaaagatatttgaaaaacaaGTTTTCATATGTTAGAATTGTACATATAGT
TCGTTTCATTGCTCTTACttcttttttggtattttttttttcatttcact
cCTGTGAGGCTTTTGTTCAAAAGATGATTAGATGTAGCACTTTACTATTT
GTAAATAAGATGAATAATATGTATGGTTGTACTAAATTTGATGATGATCC
GAGTAAGATTCCTcttattataatttattttttaaacggAAATggctttt
ttagactttttataGTACTTTTTTAGTTCCCGAATTATTCTTTTCATAAG
TAGTCATTTATTTACCTTTACTTCATAAGTGACGAACTCGTCTTATCTTA
GATCCTCAAAATCCAAATTAGAATTAAACTTCTCAAGCATAAACTCTATA
ATTTATTCCAAATTAATTTGTGGAATCCGCTTCGAGTCGTCACCGGGGGT
TTCACACGAGTTTCAAATTCGAGAAATTGGCTCCAAATCTTCAAATATCT
TTTAAGAATAATCTAATGAAGAATGGCTTTCGTTTTAATGATTGCAGCAT
GAAATTCAAGTGACGTACTGGTCCATTCTTCTTCATAATAtttatttaga
aatatttcgattttataACATAATATACCATTGACCAGGTTTAAATTCCA
AAATTTACTTTATGCCATAATAACCACAAAGCAGCATTTGAATTATGGCT
GTATTATTTAAtagaatatttttcttaattttttcatgTTGATGACATTA
TATCAATAGGTTTTCTTCTCCGAGTTTATTGTATATTTTAATTAGTCCAG
GCttactttttttagaaaagcattattaatAGAGGACACCTCAAACTCAA
AACTCATAAAAAAAACTCATGGAACTGTTGTTAAGAATCTGCCTTTTTGT
TCAGTGATCCCACTAAAGTGAGTCACTCGTCCtttatcaaaagatttttt
gtcaatCGAAAGCACTCAAATATCAAATTCTTCATGACTAACGTCAAATC
CAAGATAACCCTACCCCTa
Run BLAST on NCBI

protein sequence of TCONS_00050563-protein

>TCONS_00050563-protein ID=TCONS_00050563-protein|Name=TCONS_00050563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=667bp
MKNKHNGNFEKLADPTNVHLHDVNTPDEDLEKVYLANENSVSLSPTISPT
KGRSKHIAKAPLPFPKLSATFNFTYGITLNEALMRDAMRASNDNQLVKLM
QEKKIQKEYFFNPPLNIWNLNFTDPPKEDHNRKDLEMVPQYQNMEKDKPL
ITTESKYRDEGFKGFKLNPKVVTFASPKVHFLFDLMTCAVTLIITIIAGL
MLFYDRLADLHGFIAAIVLCVIAMVCLLGFQCIKFSPSSFPKRISKCAGP
LELSETGSAVGEHHVEYNDANHNRRAPPPHQRKPFIKRLFSPWTTAHLTG
VLIMCLPVFVVFSFYEDCNITQGPWRDSGLESFTMIIMVALFHFCSFTQL
SYLMKSVTAAIWCVVFILIIMLPPQCDIGVQSTTTLNDIVMVVVLQIVLI
ICLNRIHEKGVRANFYGDKVAAEQKDSAIEQKQVADWLIQDMFPRHVSTQ
LKYTKHCSKNYDMVGVLFASIVNFAEFYEENFEGGLECIRVLHELVGDFD
KELMKYEDIEKIKTVYGTTFMAASGLSLNESMKISQGPLKGHKYFHLKSL
VEFARGIQETLTEFNQNMLGFNFKLRCGLNAGPVTAGVIGTMKPQYDVWG
DTVNLASRMDSNGLVDHIQVDEECMQKLTDFYTFKFRATLPIKGKGERKV
YLLVEKKPEAGLVDVKE
Run BLAST on NCBI

transcript from alignment at scaffold_179:519968..528534-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050563 ID=TCONS_00050563|Name=TCONS_00050563|organism=Clytia hemisphaerica|type=transcript|length=8567bp|location=Sequence derived from alignment at scaffold_179:519968..528534- (Clytia hemisphaerica)
AGAAAAGTCTAGCTGAAATAATTAAAGAAAAATCACACTCTTTTAAAGAA
AATTACATAGTTAAAAATGAAAAATCACAGTATGCGATTTTTTTCTTAAT
TTTCTCTTTTTAAAACTTTGCTTTTTCAGGTTTACCAGGCAGAGTCCATA
TATCAGAGAAAACGTTGGGATTCCTTGGCGACAACTATACAATAGACAAT
GGCGAGGGAATCGAAAGAGCTGAGAACGACGGTGGAGGTACACTTCAAAC
ATACTTCATCAGTAGCCGAAAGAATGGACAGTCTCATTTCAAACCATGGC
GTAAGGAAAACGAAAGTGCAAAAAACTCATCAAGCAATTTGCAAGAGGTG
ACCGCTTATCGTCATGATAGTCTTGCAAACGTTTTGGAAGGAATGAAAAA
CAAACATAATGGGAATTTCGAGAAACTGGCTGATCCAACAAATGTCCACC
TGCATGATGTCAACACTCCTGATGAGGATCTAGAGAAAGTGTACCTAGCA
AATGAAAATTCAGTCTCACTCTCTCCCACTATCTCACCAACCAAAGGACG
TTCAAAACATATCGCCAAAGCACCTTTACCTTTCCCCAAATTGAGTGCAA
CTTTCAATTTTACTTATGGTATCACACTTAATGAAGCGCTAATGAGAGAT
GCGATGAGAGCTTCCAATGATAACCAGCTGGTCAAACTCATGCAAGAGAA
GAAGATTCAAAAAGAATACTTCTTCAATCCACCATTGAACATCTGGAACC
TTAACTTCACAGATCCGCCTAAGGAAGACCACAACAGAAAGGATTTAGAG
ATGGTACCCCAATACCAAAACATGGAAAAAGATAAACCGTTGATTACCAC
TGAAAGCAAATACAGAGATGAAGGCTTTAAAGGATTTAAGTTGAATCCAA
AAGTCGTCACATTTGCTTCCCCAAAAGTTCATTTCTTATTCGATCTCATG
ACATGTGCAGTTACCCTAATCATAACCATCATAGCTGGACTGATGTTATT
TTATGACCGTTTGGCAGATCTACATGGTTTCATAGCAGCCATCGTTTTAT
GTGTCATTGCCATGGTTTGTCTACTTGGATTCCAATGCATCAAATTTTCA
CCATCCAGTTTCCCGAAGAGGATTAGTAAATGTGCAGGACCATTGGAATT
GAGCGAAACAGGTTTACCTTTACATTTATTATCTCCTATTTCTTTTCCTT
TTCCTTTTCCCAAACTAATCTGTTGAACATGATACAGAATAATGCCCTGC
TTCCTTTTAAGGCTTTTTTTACTTGCTATAGTTGCTCTGAACATACTGCT
TACCTTGTCCAGATTACACGACTTGGAGAGAATATTTTAACTTAAATATG
TGTTTTTGGACCCTTTCTAATTTTTGTTTAATTAATTCGCAGCAACCGGA
AATCTTTGATCCAAATTTTTAGGTGTGGTCGGTTATCAACCCTTAATAAA
GCTCTTTCCCATCAATTTGACCCTATATAGTACATAATCGATTTTCTCGT
AAGCTTATCTTATCGGCCAAAACTTAGTCGGCCTTAATTTTAGTCGGCCT
TAATTATTAGTCGATCCTAATTTTAGTCACCTCGTCAAAATTTAGTCACT
AAGGGTCGACTAATAATTAAGACCGACTAAAAATTTGGGCCATTTCTAAT
TTACCAGCTGATGGAAAATAGACACTTTTTAATGATAATTCATAGATTTT
TAATACTTATCATGGATATGTTTCAAAAACAAGTATATAATCAATAATAA
CAACATAAGTGAAGCTTTATTGTTTTTGGTGAATTTAAAAATCTGTTTCC
ACGAGAAAAGCCCTGAAATATGTTTTTTAGTTTCTTATTTTCAAGATATT
ACGAACAGGTCATTTTTTGGCGGAAATATAAACCATGAAATTATAAAAGC
CTTTAAAAACTTAATTAGGCTCTATTCAATGATTATATACTCGTAATTCT
TTGTTAAAGTAATACCGATATGAAAAGTGGGTTAAGGAAAGCTTAATTAT
AAACTTCTAATTTTGCCTAAATTTTTAGTCGGCCCAAATTTTTAGTCGGC
CCTAATTTTAGTCACCAAGCCAAAATTTAACTTAGGGCCGACTAAGTTTT
GGCCGATAAGGTATTGCAATATTTTCTTTTTCAAAAAAATTGGCTCTTTT
TCTCAACTTCAGTTGAGCTAGAATCTGAGAATGTCTGTGTGTGTGTCTGT
GTGTCTGTCACCAAAACTTTGGGGCAGGCTGGAGACTTCAAAAATGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGTGTTTTTTTTCATTTTTTCAAAATTTTAATTTTTGGG
GCCTGGGGACGAGTTTTTCGCCAAAACGAGGCTAAAACCCAAAATGCTAT
AATTTTTTTTAAGCCATTAAGTTTACAATTGGGCCTACGAATGATTTCAA
CGATACTGAAGTTGAGCCAGTGCGGTTAGCACGTTCGACAGTATAATATA
AGGGACGAAATTTGACAGGGAATTATGATAATTCGTAATATAATATCAAG
TATTTTTTTGCTTATAGGGAGTGCAGTTGGAGAACATCATGTCGAATACA
ATGATGCTAATCATAACAGACGCGCCCCACCGCCCCACCAACGAAAGCCA
TTCATTAAACGTCTCTTCTCACCTTGGACGACCGCCCATCTTACTGGTGT
CCTCATTATGTGTCTACCCGTATTTGTCGTCTTCTCTTTCTATGAAGACT
GCAACATTACTCAAGGTCCATGGCGTGACTCAGGACTTGAATCATTTACT
ATGATCATAATGGTGGCTTTATTCCATTTCTGTAGTTTTACTCAATTGTC
GTACTTGATGAAAAGTGTTACAGCCGCTATTTGGTGTGTCGTTTTCATAT
TAATCATTATGTTACCTCCTCAATGTGATATTGGTGTTCAATCTACGACA
ACTCTTAATGACATTGTCATGGTTGTTGTCCTACAAATTGTTTTGATAAT
CTGTCTAAACCGAATCCACGAGAAAGGTGTACGAGCCAATTTCTATGGTG
ATAAAGTTGCGGCCGAACAAAAGGATAGTGCCATTGAACAAAAGCAAGTC
GCTGATTGGCTGATCCAAGATATGTTCCCACGTCACGTATCAACCCAGTT
GAAGTACACAAAGCATTGTTCCAAAAATTATGATATGGTGGGAGTACTCT
TCGCATCCATTGTTAATTTCGCGGAATTTTACGAGGAGAATTTTGAAGGT
GGTTTAGAATGTATTCGTGTATTGCATGAATTAGTTGGTGATTTTGATAA
AGAACTCATGAAATATGAAGATATTGAGAAAATAAAGACAGTTTATGGAA
CTACTTTTATGGCTGCTTCTGGTTTGAGTTTAAACGAATCGATGAAGATC
AGTCAAGGGCCTCTCAAAGGCCATAAGTACTTCCATCTCAAATCACTAGT
TGAATTTGCTAGAGGAATACAAGAGACTTTGACAGAGTTTAATCAAAATA
TGCTTGGATTTAATTTCAAATTACGTTGTGGTTTGAATGCTGGACCTGTT
ACCGCTGGAGTCATTGGTACTATGAAACCGCAATATGATGTTTGGGGTGA
CACCGTTAACTTGGCCAGTCGTATGGACTCTAATGGTTTAGTTGACCATA
TCCAAGTGGACGAGGAATGCATGCAAAAATTAACAGACTTTTATACTTTC
AAGTTCCGTGCAACTTTACCGATCAAAGGAAAAGGTGAACGTAAAGTATA
CCTTTTGGTGGAAAAGAAGCCGGAAGCTGGTTTAGTGGACGTCAAAGAAT
AATCTGGAAGGTAAATACATCTAAGATACATTTTGTTTTTTAAATGACAA
CATTACTACCCATTTTTCAGCTAATGAGTGTTTGGTATTTTTTTATAAGA
TTCTAAGTAAAACCTTAGGCTTTGATATGTTATTTCTCAATTGAATTTGC
TAGTTATTCCAGAACATAGACCTTCTATATGTTATTTCCCCCTTGTTTAT
AGGTCGGAGATCGATCGCTAAGTGATACTTTGACTGGTTGGACCACCGAC
CAACTACTTCGTAATACTAATCGTCGTCGTACTAACGTTACAAAAGATGA
AACACACGACTTACGTATTGGTCAAAGAATCAAAGTTTAAATGTTTGGAA
TAATGGTGCATTCTTACAGCGTGTCCTGAAAAAAAGCAAGATAATAGCAA
TACAAAAAAAATAAACTGAAAATTCCAATCATCGTCAATTTTTTATGCTG
GAATGCTTTAACTAAAATAGTTTTAATCTTATGTAAAACCTTGTGACGCA
TCAAGAATAGTTTGGTGGATTTAGGTTTTGGTGAGTTCTTTTCCGCTAAT
TTTTAGGACACGCTGTAAAATGATACATTTCATTATCAAATGTTCTTTTC
TGCTAGTTTTCTATTCTTTTTTACATACTGTATATTATATCTAAAAATTG
CATTTCTATGTAGGATTTGATTTTGACTTTTCCAATACCTCTATGGTGTT
TTATTGATTTTTGACTTTTTGGCTGCTAACATGGCTCTTCCAGCCAAATA
TATGAAACGAGGAAGTTTTTAAAGAAATCATCTTGCTTTTTTTTATGGTC
GTAAGTAGTTTCACTTTCCCTAGAAAATATGTTTGATGATATCATTTGTT
GACAAAATTCTTCAAAGTTGTTTTAGAGAGAAAGGTTGCTTTTTGTTGGA
AAGATATTTGAAAAACAAGTTTTCATATGTTAGAATTGTACATATAGTTC
GTTTCATTGCTCTTACTTCTTTTTTGGTATTTTTTTTTTCATTTCACTCC
TGTGAGGCTTTTGTTCAAAAGATGATTAGATGTAGCACTTTACTATTTGT
AAATAAGATGAATAATATGTATGGTTGTACTAAATTTGATGATGATCCGA
GTAAGATTCCTCTTATTATAATTTATTTTTTAAACGGAAATGGCTTTTTT
AGACTTTTTATAGTACTTTTTTAGTTCCCGAATTATTCTTTTCATAAGTA
GTCATTTATTTACCTTTACTTCATAAGTGACGAACTCGTCTTATCTTAGA
TCCTCAAAATCCAAATTAGAATTAAACTTCTCAAGCATAAACTCTATAAT
TTATTCCAAATTAATTTGTGGAATCCGCTTCGAGTCGTCACCGGGGGTTT
CACACGAGTTTCAAATTCGAGAAATTGGCTCCAAATCTTCAAATATCTTT
TAAGAATAATCTAATGAAGAATGGCTTTCGTTTTAATGATTGCAGCATGA
AATTCAAGTGACGTACTGGTCCATTCTTCTTCATAATATTTATTTAGAAA
TATTTCGATTTTATAACATAATATACCATTGACCAGGTTTAAATTCCAAA
ATTTACTTTATGCCATAATAACCACAAAGCAGCATTTGAATTATGGCTGT
ATTATTTAATAGAATATTTTTCTTAATTTTTTCATGTTGATGACATTATA
TCAATAGGTTTTCTTCTCCGAGTTTATTGTATATTTTAATTAGTCCAGGC
TTACTTTTTTTAGAAAAGCATTATTAATAGAGGACACCTCAAACTCAAAA
CTCATAAAAAAAACTCATGGAACTGTTGTTAAGAATCTGCCTTTTTGTTC
AGTGATCCCACTAAAGTGAGTCACTCGTCCTTTATCAAAAGATTTTTTGT
CAATCGAAAGCACTCAAATATCAAATTCTTCATGACTAACGTCAAATCCA
AGATAACCCTACCCCTA

Coding sequence (CDS) from alignment at scaffold_179:519968..528534-

>TCONS_00050563 ID=TCONS_00050563|Name=TCONS_00050563|organism=Clytia hemisphaerica|type=CDS|length=4008bp|location=Sequence derived from alignment at scaffold_179:519968..528534- (Clytia hemisphaerica)
GGAGTGCAGTTGGAGAACATCATGTCGAATACAATGATGCTAATCATAAC
AGACGCGCCCCACCGCCCCACCAACGAAAGCCATTCATTAAACGTCTCTT
CTCACCTTGGACGACCGCCCATCTTACTGGTGTCCTCATTATGTGTCTAC
CCGTATTTGTCGTCTTCTCTTTCTATGAAGACTGCAACATTACTCAAGGT
CCATGGCGTGACTCAGGACTTGAATCATTTACTATGATCATAATGGTGGC
TTTATTCCATTTCTGTAGTTTTACTCAATTGTCGTACTTGATGAAAAGTG
TTACAGCCGCTATTTGGTGTGTCGTTTTCATATTAATCATTATGTTACCT
CCTCAATGTGATATTGGTGTTCAATCTACGACAACTCTTAATGACATTGT
CATGGTTGTTGTCCTACAAATTGTTTTGATAATCTGTCTAAACCGAATCC
ACGAGAAAGGTGTACGAGCCAATTTCTATGGTGATAAAGTTGCGGCCGAA
CAAAAGGATAGTGCCATTGAACAAAAGCAAGTCGCTGATTGGCTGATCCA
AGATATGTTCCCACGTCACGTATCAACCCAGTTGAAGTACACAAAGCATT
GTTCCAAAAATTATGATATGGTGGGAGTACTCTTCGCATCCATTGTTAAT
TTCGCGGAATTTTACGAGGAGAATTTTGAAGGTGGTTTAGAATGTATTCG
TGTATTGCATGAATTAGTTGGTGATTTTGATAAAGAACTCATGAAATATG
AAGATATTGAGAAAATAAAGACAGTTTATGGAACTACTTTTATGGCTGCT
TCTGGTTTGAGTTTAAACGAATCGATGAAGATCAGTCAAGGGCCTCTCAA
AGGCCATAAGTACTTCCATCTCAAATCACTAGTTGAATTTGCTAGAGGAA
TACAAGAGACTTTGACAGAGTTTAATCAAAATATGCTTGGATTTAATTTC
AAATTACGTTGTGGTTTGAATGCTGGACCTGTTACCGCTGGAGTCATTGG
TACTATGAAACCGCAATATGATGTTTGGGGTGACACCGTTAACTTGGCCA
GTCGTATGGACTCTAATGGTTTAGTTGACCATATCCAAGTGGACGAGGAA
TGCATGCAAAAATTAACAGACTTTTATACTTTCAAGTTCCGTGCAACTTT
ACCGATCAAAGGAAAAGGTGAACGTAAAGTATACCTTTTGGTGGAAAAGA
AGCCGGAAGCTGGTTTAGTGGACGTCAAAGAATAAATGAAAAACAAACAT
AATGGGAATTTCGAGAAACTGGCTGATCCAACAAATGTCCACCTGCATGA
TGTCAACACTCCTGATGAGGATCTAGAGAAAGTGTACCTAGCAAATGAAA
ATTCAGTCTCACTCTCTCCCACTATCTCACCAACCAAAGGACGTTCAAAA
CATATCGCCAAAGCACCTTTACCTTTCCCCAAATTGAGTGCAACTTTCAA
TTTTACTTATGGTATCACACTTAATGAAGCGCTAATGAGAGATGCGATGA
GAGCTTCCAATGATAACCAGCTGGTCAAACTCATGCAAGAGAAGAAGATT
CAAAAAGAATACTTCTTCAATCCACCATTGAACATCTGGAACCTTAACTT
CACAGATCCGCCTAAGGAAGACCACAACAGAAAGGATTTAGAGATGGTAC
CCCAATACCAAAACATGGAAAAAGATAAACCGTTGATTACCACTGAAAGC
AAATACAGAGATGAAGGCTTTAAAGGATTTAAGTTGAATCCAAAAGTCGT
CACATTTGCTTCCCCAAAAGTTCATTTCTTATTCGATCTCATGACATGTG
CAGTTACCCTAATCATAACCATCATAGCTGGACTGATGTTATTTTATGAC
CGTTTGGCAGATCTACATGGTTTCATAGCAGCCATCGTTTTATGTGTCAT
TGCCATGGTTTGTCTACTTGGATTCCAATGCATCAAATTTTCACCATCCA
GTTTCCCGAAGAGGATTAGTAAATGTGCAGGACCATTGGAATTGAGCGAA
ACAGGGAGTGCAGTTGGAGAACATCATGTCGAATACAATGATGCTAATCA
TAACAGACGCGCCCCACCGCCCCACCAACGAAAGCCATTCATTAAACGTC
TCTTCTCACCTTGGACGACCGCCCATCTTACTGGTGTCCTCATTATGTGT
CTACCCGTATTTGTCGTCTTCTCTTTCTATGAAGACTGCAACATTACTCA
AGGTCCATGGCGTGACTCAGGACTTGAATCATTTACTATGATCATAATGG
TGGCTTTATTCCATTTCTGTAGTTTTACTCAATTGTCGTACTTGATGAAA
AGTGTTACAGCCGCTATTTGGTGTGTCGTTTTCATATTAATCATTATGTT
ACCTCCTCAATGTGATATTGGTGTTCAATCTACGACAACTCTTAATGACA
TTGTCATGGTTGTTGTCCTACAAATTGTTTTGATAATCTGTCTAAACCGA
ATCCACGAGAAAGGTGTACGAGCCAATTTCTATGGTGATAAAGTTGCGGC
CGAACAAAAGGATAGTGCCATTGAACAAAAGCAAGTCGCTGATTGGCTGA
TCCAAGATATGTTCCCACGTCACGTATCAACCCAGTTGAAGTACACAAAG
CATTGTTCCAAAAATTATGATATGGTGGGAGTACTCTTCGCATCCATTGT
TAATTTCGCGGAATTTTACGAGGAGAATTTTGAAGGTGGTTTAGAATGTA
TTCGTGTATTGCATGAATTAGTTGGTGATTTTGATAAAGAACTCATGAAA
TATGAAGATATTGAGAAAATAAAGACAGTTTATGGAACTACTTTTATGGC
TGCTTCTGGTTTGAGTTTAAACGAATCGATGAAGATCAGTCAAGGGCCTC
TCAAAGGCCATAAGTACTTCCATCTCAAATCACTAGTTGAATTTGCTAGA
GGAATACAAGAGACTTTGACAGAGTTTAATCAAAATATGCTTGGATTTAA
TTTCAAATTACGTTGTGGTTTGAATGCTGGACCTGTTACCGCTGGAGTCA
TTGGTACTATGAAACCGCAATATGATGTTTGGGGTGACACCGTTAACTTG
GCCAGTCGTATGGACTCTAATGGTTTAGTTGACCATATCCAAGTGGACGA
GGAATGCATGCAAAAATTAACAGACTTTTATACTTTCAAGTTCCGTGCAA
CTTTACCGATCAAAGGAAAAGGTGAACGTAAAGTATACCTTTTGGTGGAA
AAGAAGCCGGAAGCTGGTTTAGTGGACGTCAAAGAATAAATGAAAAACAA
ACATAATGGGAATTTCGAGAAACTGGCTGATCCAACAAATGTCCACCTGC
ATGATGTCAACACTCCTGATGAGGATCTAGAGAAAGTGTACCTAGCAAAT
GAAAATTCAGTCTCACTCTCTCCCACTATCTCACCAACCAAAGGACGTTC
AAAACATATCGCCAAAGCACCTTTACCTTTCCCCAAATTGAGTGCAACTT
TCAATTTTACTTATGGTATCACACTTAATGAAGCGCTAATGAGAGATGCG
ATGAGAGCTTCCAATGATAACCAGCTGGTCAAACTCATGCAAGAGAAGAA
GATTCAAAAAGAATACTTCTTCAATCCACCATTGAACATCTGGAACCTTA
ACTTCACAGATCCGCCTAAGGAAGACCACAACAGAAAGGATTTAGAGATG
GTACCCCAATACCAAAACATGGAAAAAGATAAACCGTTGATTACCACTGA
AAGCAAATACAGAGATGAAGGCTTTAAAGGATTTAAGTTGAATCCAAAAG
TCGTCACATTTGCTTCCCCAAAAGTTCATTTCTTATTCGATCTCATGACA
TGTGCAGTTACCCTAATCATAACCATCATAGCTGGACTGATGTTATTTTA
TGACCGTTTGGCAGATCTACATGGTTTCATAGCAGCCATCGTTTTATGTG
TCATTGCCATGGTTTGTCTACTTGGATTCCAATGCATCAAATTTTCACCA
TCCAGTTTCCCGAAGAGGATTAGTAAATGTGCAGGACCATTGGAATTGAG
CGAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032019XLOC_032019Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050563-proteinTCONS_00050563-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050563-exon-scaffold_179-1575043694:527374..528534TCONS_00050563-exon-scaffold_179-1575043694:527374..528534Clytia hemisphaericaexon
TCONS_00050563-exon-scaffold_179-1575043694:521875..523117TCONS_00050563-exon-scaffold_179-1575043694:521875..523117Clytia hemisphaericaexon
TCONS_00050563-exon-scaffold_179-1575043694:519968..521682TCONS_00050563-exon-scaffold_179-1575043694:519968..521682Clytia hemisphaericaexon
TCONS_00050563-exon-scaffold_179-1510915933:527374..528534TCONS_00050563-exon-scaffold_179-1510915933:527374..528534Clytia hemisphaericaexon
TCONS_00050563-exon-scaffold_179-1510915933:521875..523117TCONS_00050563-exon-scaffold_179-1510915933:521875..523117Clytia hemisphaericaexon
TCONS_00050563-exon-scaffold_179-1510915933:519968..521682TCONS_00050563-exon-scaffold_179-1510915933:519968..521682Clytia hemisphaericaexon
TCONS_00050563-exon-scaffold_179-1491911889:527374..528534TCONS_00050563-exon-scaffold_179-1491911889:527374..528534Clytia hemisphaericaexon
TCONS_00050563-exon-scaffold_179-1491911889:521875..523117TCONS_00050563-exon-scaffold_179-1491911889:521875..523117Clytia hemisphaericaexon
TCONS_00050563-exon-scaffold_179-1491911889:519968..521682TCONS_00050563-exon-scaffold_179-1491911889:519968..521682Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:519968..528534 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.49288	7.74216	2.19855	1.71874	35.4117	25.5655	25.0809	27.2045	14.9941	18.4968	18.2936	13.6994	19.8778	15.8617	11.0877	15.6421	22.2464	20.9098	19.9371	24.2238	31.0647	32.581	23.0128	26.5686	21.2374	24.1444	12.7403	12.0432	21.4613	21.9374
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001054A/G_cyclase
IPR018297A/G_cyclase_CS
IPR029787Nucleotide_cyclase
Vocabulary: Biological Process
TermDefinition
GO:0009190cyclic nucleotide biosynthetic process
GO:0035556intracellular signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0016849phosphorus-oxygen lyase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009190 cyclic nucleotide biosynthetic process
biological_process GO:0035556 intracellular signal transduction
molecular_function GO:0016849 phosphorus-oxygen lyase activity
Blast
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BLAST of TCONS_00050563 vs. Swiss-Prot (Human)
Match: ADCY9 (Adenylate cyclase type 9 OS=Homo sapiens GN=ADCY9 PE=1 SV=4)

HSP 1 Score: 254.603 bits (649), Expect = 1.122e-68
Identity = 162/401 (40.40%), Postives = 229/401 (57.11%), Query Frame = 3 
Query: 1251 KRLF---SPWTTAHLTGVLIMCLPVFVVFSFYEDCNITQGPWRDSGLESFT-MIIMVALFHFCSFTQLSYLMKSVTAAIWCV--VFILIIMLPPQCDI------GVQSTTTL--------------------NDXXXXXXXXXXXXXXXNRIHEKGVRANFYGDKVAAEQKDSAIEQKQVADWLIQDMFPRHVSTQLKYTKHCSKNYDMVGVLFASIVNFAEFYEENFEGGLECIRVLHELVGDFDKELMK--YEDIEKIKTVYGTTFMAASGLSLNESMKISQGPLKGHKYFHLKSLVEFARGIQETLTEFNQNMLGFNFKLRCGLNAGPVTAGVIGTMKPQYDVWGDTVNLASRMDSNGLVDHIQVDEECMQKLTDF-YTFKFRATLPIKGKGERKVYL 2348
            KRL    + W   H  G +++ LP   V+S     ++T     +     FT    ++A+ H+C+F QLS  M+S  A +     + +L + L P   +       VQ+ ++                      ++V+V  L ++L+  LNR  E   R +++GD  A   +      +  ADWL++++ P HV+ QLK ++  SKN+D  GV+FASIVNF+EFYEEN+EGG EC RVL+EL+GDFD+ L K  Y  IEKIKT+ G T+MAASGL+       +Q     H   HL+ L EFA+ +   + +FN NML FNFKLR G N GP+TAGVIGT K  YD+WGDTVN+ASRMD+ G+   IQV EE  + L+   Y F +R T+ +KGKG+ K YL
Sbjct:  853 KRLLEWIAGWLPRHCIGAILVSLPALAVYS-----HVTSEYETNIHFPVFTGSAALIAVVHYCNFCQLSSWMRSSLATVVGAGPLLLLYVSLCPDSSVLTSPLDAVQNFSSERNPCNSSVPRDLRRPASLIGQEVVLVFFLLLLLVWFLNREFEVSYRLHYHGDVEADLHRTKIQSMRDQADWLLRNIIPYHVAEQLKVSQTYSKNHDSGGVIFASIVNFSEFYEENYEGGKECYRVLNELIGDFDELLSKPDYSSIEKIKTI-GATYMAASGLN------TAQAQDGSHPQEHLQILFEFAKEMMRVVDDFNNNMLWFNFKLRVGFNHGPLTAGVIGTTKLLYDIWGDTVNIASRMDTTGVECRIQVSEESYRVLSKMGYDFDYRGTVNVKGKGQMKTYL 1241
The following BLAST results are available for this feature:
BLAST of TCONS_00050563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ADCY91.122e-6840.40Adenylate cyclase type 9 OS=Homo sapiens GN=ADCY9 ... [more]
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