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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050565 ID=TCONS_00050565|Name=TCONS_00050565|organism=Clytia hemisphaerica|type=transcript|length=1510bp
tatttgtttgattgtttgaaaaggattttcgaaaaaatttgacgtgtcat
tggcttaggggtcacctgaattcttagggggcacctaaaacctgctgcca
agccatgaaAAATCGCATTTCgcagaactaattttcgtggtaGACACCAT
AAAACGCGAAAATtggttcccttaagAAACCAGCAAGGTTATGATGAAGT
GGATCAATTTCCTCACAGACGCCAACCTCCAAATAAAATCAATGATGTCA
TCAACAGGTATGGACTTCCTACAGGTGATTTTGTGATGCAATATTCCAAT
CATGTCTTACAGTACGATACTGcaagaaaaattccaaaatgggTCTTAGA
GCATATGTCAAAAGACGATTTGAAAGGCCACGCAGAACGAAGTCAGTGTA
ATTTCAAGGTAGATCAAAGTGTACCGAAACAGTTTCGCTCACACAATGAA
GATTACCTTGGAAGTGGTTTTGCTCGTGGACACATGGTGCCAGCAAGCGA
CGTAAAGAAATCACAAGAGAGTATGCAAGAGACATTTTACCTCACCAATA
TTCTACCACAAGATTTTGATAATAATGGAGGTTTTTGGTATCGTATGGAA
AATTACTGCCGTTCCTTAACCAACAGATTTACTGATGTTTACGTTATTTC
GGGTCCACTGTTCCTTTCGCATTTtgttcaaaataagaaaatggtGACTT
TTCAGGTTATTGGTGATAACAACGTTGCAGTACCCAGCCACTTGTTCAAG
ATAATCCTTGTGGAGAACCACGGACGACCCATCGCTGCAGGAGCTTTCGT
TGTTCCAAATGCACCGATTGCAGATGATAAAGTACTGACTGATTATCAAG
TTTCGTTATCACAGATCGAAAATATGACTGGATTCATGTTTTTCCCTAAA
ATAGACATGAACAATTTACCAAATTTATGTTCGAGAGACAACTGTCAGTT
GCTAACAAAAAATACGGctgatttgaatattttgatgaaaaacttgAAAC
GTGTTCGGAGTAAAGAGGAATTAGACAATCTGTGGAATCAAGTTCTTCAA
AAGAACGTACAGCTCGACCAAAAATTCATGCAAATGTACTGGGAGAAACG
GAAGACATATGAAAAAGATAATTAAATTGACTTTGAGTGTGCATTGTTTA
CAAGAGAAATTAGTATCAAGAAAACAAGATGTGTTTTCAGACTTGTTTTC
GTTTAATCAGGTATGCAAGGTATGATAATGTTTTTAACTGTGAGCTTAGT
GTCTGATTTCGAGTTACCCTTTTGAAAAGTCCTTGTCGACTTAATCACGA
AAAATTGACCATTTTACACACACAGTGTAAATAATAGGTGGAAGGTGTTT
TTTTAAAGGTGTGTCTTTGGCTGTTCGACTTAGGTGATTGTGAATATTTT
GTGAATTcgcttaattttttttgagaattttctaaatttttattgGAGTA
TTTATAGATgttgtttataaaattttatactgagaaaataaaaaaattga
attaaaaaat Run BLAST on NCBI transcript from alignment at scaffold_179:544947..550013- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050565 ID=TCONS_00050565|Name=TCONS_00050565|organism=Clytia hemisphaerica|type=transcript|length=5067bp|location=Sequence derived from alignment at scaffold_179:544947..550013- (Clytia hemisphaerica)
TATTTGTTTGATTGTTTGAAAAGGATTTTCGAAAAAATTTGACGTGTCAT
TGGCTTAGGGGTCACCTGAATTCTTAGGGGGCACCTAAAACCTGCTGCCA
AGCCATGAAAAATCGCATTTCGCAGAACTAATTTTCGTGGTAGACACCAT
AAAACGCGAAAATTGGTTCCCTTAAGGTAATTATTATTTAATATAGAGCT
GGTTTCATAACTTTGCATTGGAAGATATAGTCGTCTCCCAGGATGGCTGA
GATGGCTTTCAAAATATATTATAAGAAGTGTTGCCTTCAATGAAGCTGAT
ATGGAATATACTTTTTAGTACATTATATAATGATAAACAGATTTTTTGAT
TTGTTTTATTAGAAACCAGCAAGGTTATGATGAAGTGGATCAATTTCCTC
ACAGACGCCAACCTCCAAATAAAATCAATGATGTCATCAACAGGTATGGA
CTTCCTACAGGTGATTTTGTGATGCAATATTCCAATCATGTCTTACAGTA
CGATACTGCAAGAAAAATTCCAAAATGGGTCTTAGAGCATATGTCAAAAG
ACGATTTGAAAGGCCACGCAGAACGAAGTCAGTGTAATTTCAAGGTAGAT
CAAAGTGTACCGAAACAGTTTCGCTCACACAATGAAGATTACCTTGGAAG
TGGTTTTGCTCGTGGACACATGGTGCCAGCAAGTAAGAAACGTTTCACAT
TCTTTAACTATTTCACATACTCTGGGACAACACTCACAACATAACCTGGA
ATGATTTTATTTATGAATCTAAAAATTCACATCAAAAGAATTGGTTGAAT
ATACTGGATTGTTATGTAAACAAAATTACTATCATCTAAATCAGAAATTG
TTCTTTTAGGGTATAGCTAAAATTTATGAATTTACACATTGAACTATCCT
TCTTCCACTTTATAGGCGACGTAAAGAAATCACAAGAGAGTATGCAAGAG
ACATTTTACCTCACCAATATTCTACCACAAGATTTTGATAATAATGGAGG
TTTTTGGTATCGTATGGAAAATTACTGCCGTTCCTTAACCAACAGATTTA
CTGATGTTTACGTTATTTCGGGTCCACTGTTCCTTTCGCATTTTGTTCAA
AATAAGAAAATGGTGACTTTTCAGGTATGGTTGTTTACCTTCTTTTAAAT
TTTCATTATGGAGTAGAGTAGTTGGAATAAACTGGTTTAAGTGGTTTTTT
TATGATCATATAACGAAAAGCTAATAAATGACCCTGCCCATCAGACAAAA
TTTTGACCCTGTTTGACGAAATTTGTACCCTGTTAGACGCAAGAACCCAC
TCTGACAAGTGGTGGGAAAGACCAAAAATCAACCCTGTCGGATTAACTTT
CAAAATTAGTTGATTTGCAACCTGTGAGCTTGTAAAAGGTACTCATACCA
GTGGGACGTCTTTTACCCCTATTTCGCTTGAGTAACCACTCTTGGTCCGT
AATATTGATAATACTATATTGTTATATCAGTGTATCATGTCTCATGTCTA
TCATACGTTTCCCTAAACCCTGCTTAGAACATGGGCCCCGACGAGCCATT
TGGAGTGGGGCTTCCATTATTTTGGAAAAAAATGTCGCCCATCATGGTTA
GACAACAAAGAAACCCACCATGGTTAGGCAACAAAGAAACCCACCATGGT
TTTAGGCAACAAAGAAAAACGTTCATTCTTTACACCCTCAAAACACNTTT
GATTGTTTGAAAAGGATTTTCGAAAAAATTTGACGTGTCATTGGCTTAGG
GGTCACCTGAATTCTTAGGGGGCACCTAAAACCTGCTGCCAAGCCATGAA
AAATCGCATTTCGCAGAACTAATTTTCGTGGTAGACACCATAAAACGCGA
AAATTGGTTCCCTTAAGGTAATTATTATTTAATATAGAGCTGGTTTCATA
ACTTTGCATTGGAAGATATAGTCGTCTCCCAGGATGGCTGAGATGGCTTT
CAAAATATATTATAAGAAGTGTTGCCTTCAATGAAGCTGATATGGAATAT
ACTTTTTAGTACATTATATAATGATAAACAGATTTTTTGATTTGTTTTAT
TAGAAACCAGCAAGGTTATGATGAAGTGGATCAATTTCCTCACAGACGCC
AACCTCCAAATAAAATCAATGATGTCATCAACAGGTATGGACTTCCTACA
GGTGATTTTGTGATGCAATATTCCAATCATGTCTTACAGTACGATACTGC
AAGAAAAATTCCAAAATGGGTCTTAGAGCATATGTCAAAAGACGATTTGA
AAGGCCACGCAGAACGAAGTCAGTGTAATTTCAAGGTAGATCAAAGTGTA
CCGAAACAGTTTCGCTCACACAATGAAGATTACCTTGGAAGTGGTTTTGC
TCGTGGACACATGGTGCCAGCAAGTAAGAAACGTTTCACATTCTTTAACT
ATTTCACATACTCTGGGACAACACTCACAACATAACCTGGAATGATTTTA
TTTATGAATCTAAAAATTCACATCAAAAGAATTGGTTGAATATACTGGAT
TGTTATGTAAACAAAATTACTATCATCTAAATCAGAAATTGTTCTTTTAG
GGTATAGCTAAAATTTATGAATTTACACATTGAACTATCCTTCTTCCACT
TTATAGGCGACGTAAAGAAATCACAAGAGAGTATGCAAGAGACATTTTAC
CTCACCAATATTCTACCACAAGATTTTGATAATAATGGAGGTTTTTGGTA
TCGTATGGAAAATTACTGCCGTTCCTTAACCAACAGATTTACTGATGTTT
ACGTTATTTCGGGTCCACTGTTCCTTTCGCATTTTGTTCAAAATAAGAAA
ATGGTGACTTTTCAGGTATGGTTGTTTACCTTCTTTTAAATTTTCATTAT
GGAGTAGAGTAGTTGGAATAAACTGGTTTAAGTGGTTTTTTTATGATCAT
ATAACGAAAAGCTAATAAATGACCCTGCCCATCAGACAAAATTTTGACCC
TGTTTGACGAAATTTGTACCCTGTTAGACGCAAGAACCCACTCTGACAAG
TGGTGGGAAAGACCAAAAATCAACCCTGTCGGATTAACTTTCAAAATTAG
TTGATTTGCAACCTGTGAGCTTGTAAAAGGTACTCATACCAGTGGGACGT
CTTTTACCCCTATTTCGCTTGAGTAACCACTCTTGGTCCGTAATATTGAT
AATACTATATTGTTATATCAGTGTATCATGTCTCATGTCTATCATACGTT
TCCCTAAACCCTGCTTAGAACATGGGCCCCGACGAGCCATTTGGAGTGGG
GCTTCCATTATTTTGGAAAAAAATGTCGCCCATCATGGTTAGACAACAAA
GAAACCCACCATGGTTAGGCAACAAAGAAACCCACCATGGTTTTAGGCAA
CAAAGAAAAACGTTCATTCTTTACACCCTCAAAACACCCTAAGACGTTTA
GGGAGAACAACAGTTTTAATGATTTGATTTAGTCTGTTTAAAGTTGTTCT
AATGTTAGGTTAAACAGGTTATCGTAACAATTTGATTTTTTTGCTTTAAT
CTATAGGTTATTGGTGATAACAACGTTGCAGTACCCAGCCACTTGTTCAA
GATAATCCTTGTGGAGAACCACGGACGACCCATCGCTGCAGGAGCTTTCG
TTGTTCCAAATGCACCGATTGCAGATGATAAAGTACTGACTGATTATCAA
GTTTCGTTANGACCCTGCCCAACAGGCAAAATTTGTACCCTGTTTGACAA
AATTCGTACCCTGTTCTATACAAAAATCAAACCTGACAAGTGGTGGGAAT
GACCAAAAATCAACCCTGTCAGATTAACTTTCAAAATTGATTTGCGACCC
TGTCAAGACATTTTAAGAGCTTGTAAAAGTAACCCATACCAGTGGCACGT
CTTTTACCCCTATTTCGCTTGAGTAACCCCTCTTGGCCCGTAATATTGAT
AATACTACATATATTTTTATATATCATTGTAGGTAGAGAGTCTATCATCA
TGCTTCCCTAAACCCTGCTTGGAACATGGGCCCCGGCAAGCCATTTGGAG
TGGGGCTTCTAATAATTTGGGAAAAAAATTCGCCCACCATGGTTAGGCAA
CAAAGAAACCCACCATGGTTTTAGGCAACAAAGAAATCCACCATGGTTTT
AGGCAACAAAGAAAAACGTTCATTCTTTACACCCTCAAAACACCCTAAGA
CGTTTAGGGAGAACAACAGTTTTAATGATTTGATTTAGTCTGTTTAAAGT
TGTTCTAATGTTAGGTTAAACAGGTTATCGTAACAATTTGATTTTTTTGC
TTTAATCTATAGGTTATTGGTGATAACAACGTTGCAGTACCCAGCCACTT
GTTCAAGATAATCCTTGTGGAGAACCACGGACGACCCATCGCTGCAGGAG
CTTTCGTTGTTCCAAATGCACCGATTGCAGATGATAAAGTACTGACTGAT
TATCAAGTTTCGTTATCACAGATCGAAAATATGACTGGATTCATGTTTTT
CCCTAAAATAGACATGAACAATTTACCAAATTTATGTTCGAGAGACAACT
GTCAGTTGCTAACAAAAAATACGGCTGATTTGAATATTTTGATGAAAAAC
TTGAAACGTGTTCGGAGTAAAGAGGAATTAGACAATCTGTGGAATCAAGT
TCTTCAAAAGAACGTACAGCTCGACCAAAAATTCATGCAAATGTACTGGG
AGAAACGGAAGACATATGAAAAAGATAATTAAATTGACTTTGAGTGTGCA
TTGTTTACAAGAGAAATTAGTATCAAGAAAACAAGATGTGTTTTCAGACT
TGTTTTCGTTTAATCAGGTATGCAAGGTATGATAATGTTTTTAACTGTGA
GCTTAGTGTCTGATTTCGAGTTACCCTTTTGAAAAGTCCTTGTCGACTTA
ATCACGAAAAATTGACCATTTTACACACACAGTGTAAATAATAGGTGGAA
GGTGTTTTTTTAAAGGTGTGTCTTTGGCTGTTCGACTTAGGTGATTGTGA
ATATTTTGTGAATTCGCTTAATTTTTTTTGAGAATTTTCTAAATTTTTAT
TGGAGTATTTATAGATGTTGTTTATAAAATTTTATACTGAGAAAATAAAA
AAATTGAATTAAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050565-exon-scaffold_179-1575043694:549838..550013 | TCONS_00050565-exon-scaffold_179-1575043694:549838..550013 | Clytia hemisphaerica | exon |
| TCONS_00050565-exon-scaffold_179-1575043694:549332..549651 | TCONS_00050565-exon-scaffold_179-1575043694:549332..549651 | Clytia hemisphaerica | exon |
| TCONS_00050565-exon-scaffold_179-1575043694:547199..547407 | TCONS_00050565-exon-scaffold_179-1575043694:547199..547407 | Clytia hemisphaerica | exon |
| TCONS_00050565-exon-scaffold_179-1575043694:544947..545751 | TCONS_00050565-exon-scaffold_179-1575043694:544947..545751 | Clytia hemisphaerica | exon |
| TCONS_00050565-exon-scaffold_179-1510915933:549838..550013 | TCONS_00050565-exon-scaffold_179-1510915933:549838..550013 | Clytia hemisphaerica | exon |
| TCONS_00050565-exon-scaffold_179-1510915933:549332..549651 | TCONS_00050565-exon-scaffold_179-1510915933:549332..549651 | Clytia hemisphaerica | exon |
| TCONS_00050565-exon-scaffold_179-1510915933:547199..547407 | TCONS_00050565-exon-scaffold_179-1510915933:547199..547407 | Clytia hemisphaerica | exon |
| TCONS_00050565-exon-scaffold_179-1510915933:544947..545751 | TCONS_00050565-exon-scaffold_179-1510915933:544947..545751 | Clytia hemisphaerica | exon |
| TCONS_00050565-exon-scaffold_179-1491911889:549838..550013 | TCONS_00050565-exon-scaffold_179-1491911889:549838..550013 | Clytia hemisphaerica | exon |
| TCONS_00050565-exon-scaffold_179-1491911889:549332..549651 | TCONS_00050565-exon-scaffold_179-1491911889:549332..549651 | Clytia hemisphaerica | exon |
| TCONS_00050565-exon-scaffold_179-1491911889:547199..547407 | TCONS_00050565-exon-scaffold_179-1491911889:547199..547407 | Clytia hemisphaerica | exon |
| TCONS_00050565-exon-scaffold_179-1491911889:544947..545751 | TCONS_00050565-exon-scaffold_179-1491911889:544947..545751 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:544947..550013 - |
Blast
BLAST of TCONS_00050565 vs. Swiss-Prot (Human)
Match: EXOG (Nuclease EXOG, mitochondrial OS=Homo sapiens GN=EXOG PE=1 SV=2) HSP 1 Score: 278.1 bits (710), Expect = 6.610e-88 Identity = 134/290 (46.21%), Postives = 191/290 (65.86%), Query Frame = 1
Query: 247 VINRYGLP-TGDFVMQYSNHVLQYDTARKIPKWVLEHMSKDDLKGHAERSQCNFKVDQSVPKQFRSHNEDYLGSGFARGHMVPASDVKKSQESMQETFYLTNILPQDFDNNGGFWYRMENYCRSLTNRFTDVYVISGPLFLSHFVQN-KKMVTFQVIGDNNVAVPSHLFKIILVENHG---RPIAAGAFVVPNAPIADDKVLTDYQVSLSQIENMTGFMFFPKID-MNNLPNLCSRDNCQLLTKNTADLNILMKNLKRVRSKEELDNLWNQVLQKNVQLDQKFMQMYWEK 1098
V+ ++G P TG Y+NH L YD A+++P+WVLEH+SK + G A+R C FK D ++P F + NEDY+GSG++RGHM PA + K S ++M ETFYL+NI+PQDFDNN G+W R+E YCR LT RF DV+V+SGPL L + KK+V++QVIG++NVAVPSHL+K+IL P+A GAFVVPN I LT++QVSL +E ++G +FFP +D +++ N+CS D C+LL L + + ++ RS L+ + + ++ D FM Y +K
Sbjct: 61 VLEQFGFPLTGTEARCYTNHALSYDQAKRVPRWVLEHISKSKIMGDADRKHCKFKPDPNIPPTFSAFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQDFDNNSGYWNRIEMYCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLYKVILARRSSVSTEPLALGAFVVPNEAIGFQPQLTEFQVSLQDLEKLSGLVFFPHLDRTSDIRNICSVDTCKLLDFQEFTLYLSTRKIEGARSVLRLEKIMENLKNAEIEPDDYFMSRYEKK 350
The following BLAST results are available for this feature:
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