TCONS_00050566 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050566
Unique NameTCONS_00050566
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050566 ID=TCONS_00050566|Name=TCONS_00050566|organism=Clytia hemisphaerica|type=transcript|length=1510bp
tatttgtttgattgtttgaaaaggattttcgaaaaaatttgacgtgtcat
tggcttaggggtcacctgaattcttagggggcacctaaaacctgctgcca
agccatgaaAAATCGCATTTCgcagaactaattttcgtggtaGACACCAT
AAAACGCGAAAATtggttcccttaagAAACCAGCAAGGTTATGATGAAGT
GGATCAATTTCCTCACAGACGCCAACCTCCAAATAAAATCAATGATGTCA
TCAACAGGTATGGACTTCCTACAGGTGATTTTGTGATGCAATATTCCAAT
CATGTCTTACAGTACGATACTGcaagaaaaattccaaaatgggTCTTAGA
GCATATGTCAAAAGACGATTTGAAAGGCCACGCAGAACGAAGTCAGTGTA
ATTTCAAGGTAGATCAAAGTGTACCGAAACAGTTTCGCTCACACAATGAA
GATTACCTTGGAAGTGGTTTTGCTCGTGGACACATGGTGCCAGCAAGCGA
CGTAAAGAAATCACAAGAGAGTATGCAAGAGACATTTTACCTCACCAATA
TTCTACCACAAGATTTTGATAATAATGGAGGTTTTTGGTATCGTATGGAA
AATTACTGCCGTTCCTTAACCAACAGATTTACTGATGTTTACGTTATTTC
GGGTCCACTGTTCCTTTCGCATTTtgttcaaaataagaaaatggtGACTT
TTCAGGTTATTGGTGATAACAACGTTGCAGTACCCAGCCACTTGTTCAAG
ATAATCCTTGTGGAGAACCACGGACGACCCATCGCTGCAGGAGCTTTCGT
TGTTCCAAATGCACCGATTGCAGATGATAAAGTACTGACTGATTATCAAG
TTTCGTTATCACAGATCGAAAATATGACTGGATTCATGTTTTTCCCTAAA
ATAGACATGAACAATTTACCAAATTTATGTTCGAGAGACAACTGTCAGTT
GCTAACAAAAAATACGGctgatttgaatattttgatgaaaaacttgAAAC
GTGTTCGGAGTAAAGAGGAATTAGACAATCTGTGGAATCAAGTTCTTCAA
AAGAACGTACAGCTCGACCAAAAATTCATGCAAATGTACTGGGAGAAACG
GAAGACATATGAAAAAGATAATTAAATTGACTTTGAGTGTGCATTGTTTA
CAAGAGAAATTAGTATCAAGAAAACAAGATGTGTTTTCAGACTTGTTTTC
GTTTAATCAGGTATGCAAGGTATGATAATGTTTTTAACTGTGAGCTTAGT
GTCTGATTTCGAGTTACCCTTTTGAAAAGTCCTTGTCGACTTAATCACGA
AAAATTGACCATTTTACACACACAGTGTAAATAATAGGTGGAAGGTGTTT
TTTTAAAGGTGTGTCTTTGGCTGTTCGACTTAGGTGATTGTGAATATTTT
GTGAATTcgcttaattttttttgagaattttctaaatttttattgGAGTA
TTTATAGATgttgtttataaaattttatactgagaaaataaaaaaattga
attaaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00050566-protein

>TCONS_00050566-protein ID=TCONS_00050566-protein|Name=TCONS_00050566-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
MQYSNHVLQYDTARKIPKWVLEHMSKDDLKGHAERSQCNFKVDQSVPKQF
RSHNEDYLGSGFARGHMVPASDVKKSQESMQETFYLTNILPQDFDNNGGF
WYRMENYCRSLTNRFTDVYVISGPLFLSHFVQNKKMVTFQVIGDNNVAVP
SHLFKIILVENHGRPIAAGAFVVPNAPIADDKVLTDYQVSLSQIENMTGF
MFFPKIDMNNLPNLCSRDNCQLLTKNTADLNILMKNLKRVRSKEELDNLW
NQVLQKNVQLDQKFMQMYWEKRKTYEKDN
Run BLAST on NCBI

transcript from alignment at scaffold_179:544947..550013-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050566 ID=TCONS_00050566|Name=TCONS_00050566|organism=Clytia hemisphaerica|type=transcript|length=5067bp|location=Sequence derived from alignment at scaffold_179:544947..550013- (Clytia hemisphaerica)
TATTTGTTTGATTGTTTGAAAAGGATTTTCGAAAAAATTTGACGTGTCAT TGGCTTAGGGGTCACCTGAATTCTTAGGGGGCACCTAAAACCTGCTGCCA AGCCATGAAAAATCGCATTTCGCAGAACTAATTTTCGTGGTAGACACCAT AAAACGCGAAAATTGGTTCCCTTAAGGTAATTATTATTTAATATAGAGCT GGTTTCATAACTTTGCATTGGAAGATATAGTCGTCTCCCAGGATGGCTGA GATGGCTTTCAAAATATATTATAAGAAGTGTTGCCTTCAATGAAGCTGAT ATGGAATATACTTTTTAGTACATTATATAATGATAAACAGATTTTTTGAT TTGTTTTATTAGAAACCAGCAAGGTTATGATGAAGTGGATCAATTTCCTC ACAGACGCCAACCTCCAAATAAAATCAATGATGTCATCAACAGGTATGGA CTTCCTACAGGTGATTTTGTGATGCAATATTCCAATCATGTCTTACAGTA CGATACTGCAAGAAAAATTCCAAAATGGGTCTTAGAGCATATGTCAAAAG ACGATTTGAAAGGCCACGCAGAACGAAGTCAGTGTAATTTCAAGGTAGAT CAAAGTGTACCGAAACAGTTTCGCTCACACAATGAAGATTACCTTGGAAG TGGTTTTGCTCGTGGACACATGGTGCCAGCAAGTAAGAAACGTTTCACAT TCTTTAACTATTTCACATACTCTGGGACAACACTCACAACATAACCTGGA ATGATTTTATTTATGAATCTAAAAATTCACATCAAAAGAATTGGTTGAAT ATACTGGATTGTTATGTAAACAAAATTACTATCATCTAAATCAGAAATTG TTCTTTTAGGGTATAGCTAAAATTTATGAATTTACACATTGAACTATCCT TCTTCCACTTTATAGGCGACGTAAAGAAATCACAAGAGAGTATGCAAGAG ACATTTTACCTCACCAATATTCTACCACAAGATTTTGATAATAATGGAGG TTTTTGGTATCGTATGGAAAATTACTGCCGTTCCTTAACCAACAGATTTA CTGATGTTTACGTTATTTCGGGTCCACTGTTCCTTTCGCATTTTGTTCAA AATAAGAAAATGGTGACTTTTCAGGTATGGTTGTTTACCTTCTTTTAAAT TTTCATTATGGAGTAGAGTAGTTGGAATAAACTGGTTTAAGTGGTTTTTT TATGATCATATAACGAAAAGCTAATAAATGACCCTGCCCATCAGACAAAA TTTTGACCCTGTTTGACGAAATTTGTACCCTGTTAGACGCAAGAACCCAC TCTGACAAGTGGTGGGAAAGACCAAAAATCAACCCTGTCGGATTAACTTT CAAAATTAGTTGATTTGCAACCTGTGAGCTTGTAAAAGGTACTCATACCA GTGGGACGTCTTTTACCCCTATTTCGCTTGAGTAACCACTCTTGGTCCGT AATATTGATAATACTATATTGTTATATCAGTGTATCATGTCTCATGTCTA TCATACGTTTCCCTAAACCCTGCTTAGAACATGGGCCCCGACGAGCCATT TGGAGTGGGGCTTCCATTATTTTGGAAAAAAATGTCGCCCATCATGGTTA GACAACAAAGAAACCCACCATGGTTAGGCAACAAAGAAACCCACCATGGT TTTAGGCAACAAAGAAAAACGTTCATTCTTTACACCCTCAAAACACNTTT GATTGTTTGAAAAGGATTTTCGAAAAAATTTGACGTGTCATTGGCTTAGG GGTCACCTGAATTCTTAGGGGGCACCTAAAACCTGCTGCCAAGCCATGAA AAATCGCATTTCGCAGAACTAATTTTCGTGGTAGACACCATAAAACGCGA AAATTGGTTCCCTTAAGGTAATTATTATTTAATATAGAGCTGGTTTCATA ACTTTGCATTGGAAGATATAGTCGTCTCCCAGGATGGCTGAGATGGCTTT CAAAATATATTATAAGAAGTGTTGCCTTCAATGAAGCTGATATGGAATAT ACTTTTTAGTACATTATATAATGATAAACAGATTTTTTGATTTGTTTTAT TAGAAACCAGCAAGGTTATGATGAAGTGGATCAATTTCCTCACAGACGCC AACCTCCAAATAAAATCAATGATGTCATCAACAGGTATGGACTTCCTACA GGTGATTTTGTGATGCAATATTCCAATCATGTCTTACAGTACGATACTGC AAGAAAAATTCCAAAATGGGTCTTAGAGCATATGTCAAAAGACGATTTGA AAGGCCACGCAGAACGAAGTCAGTGTAATTTCAAGGTAGATCAAAGTGTA CCGAAACAGTTTCGCTCACACAATGAAGATTACCTTGGAAGTGGTTTTGC TCGTGGACACATGGTGCCAGCAAGTAAGAAACGTTTCACATTCTTTAACT ATTTCACATACTCTGGGACAACACTCACAACATAACCTGGAATGATTTTA TTTATGAATCTAAAAATTCACATCAAAAGAATTGGTTGAATATACTGGAT TGTTATGTAAACAAAATTACTATCATCTAAATCAGAAATTGTTCTTTTAG GGTATAGCTAAAATTTATGAATTTACACATTGAACTATCCTTCTTCCACT TTATAGGCGACGTAAAGAAATCACAAGAGAGTATGCAAGAGACATTTTAC CTCACCAATATTCTACCACAAGATTTTGATAATAATGGAGGTTTTTGGTA TCGTATGGAAAATTACTGCCGTTCCTTAACCAACAGATTTACTGATGTTT ACGTTATTTCGGGTCCACTGTTCCTTTCGCATTTTGTTCAAAATAAGAAA ATGGTGACTTTTCAGGTATGGTTGTTTACCTTCTTTTAAATTTTCATTAT GGAGTAGAGTAGTTGGAATAAACTGGTTTAAGTGGTTTTTTTATGATCAT ATAACGAAAAGCTAATAAATGACCCTGCCCATCAGACAAAATTTTGACCC TGTTTGACGAAATTTGTACCCTGTTAGACGCAAGAACCCACTCTGACAAG TGGTGGGAAAGACCAAAAATCAACCCTGTCGGATTAACTTTCAAAATTAG TTGATTTGCAACCTGTGAGCTTGTAAAAGGTACTCATACCAGTGGGACGT CTTTTACCCCTATTTCGCTTGAGTAACCACTCTTGGTCCGTAATATTGAT AATACTATATTGTTATATCAGTGTATCATGTCTCATGTCTATCATACGTT TCCCTAAACCCTGCTTAGAACATGGGCCCCGACGAGCCATTTGGAGTGGG GCTTCCATTATTTTGGAAAAAAATGTCGCCCATCATGGTTAGACAACAAA GAAACCCACCATGGTTAGGCAACAAAGAAACCCACCATGGTTTTAGGCAA CAAAGAAAAACGTTCATTCTTTACACCCTCAAAACACCCTAAGACGTTTA GGGAGAACAACAGTTTTAATGATTTGATTTAGTCTGTTTAAAGTTGTTCT AATGTTAGGTTAAACAGGTTATCGTAACAATTTGATTTTTTTGCTTTAAT CTATAGGTTATTGGTGATAACAACGTTGCAGTACCCAGCCACTTGTTCAA GATAATCCTTGTGGAGAACCACGGACGACCCATCGCTGCAGGAGCTTTCG TTGTTCCAAATGCACCGATTGCAGATGATAAAGTACTGACTGATTATCAA GTTTCGTTANGACCCTGCCCAACAGGCAAAATTTGTACCCTGTTTGACAA AATTCGTACCCTGTTCTATACAAAAATCAAACCTGACAAGTGGTGGGAAT GACCAAAAATCAACCCTGTCAGATTAACTTTCAAAATTGATTTGCGACCC TGTCAAGACATTTTAAGAGCTTGTAAAAGTAACCCATACCAGTGGCACGT CTTTTACCCCTATTTCGCTTGAGTAACCCCTCTTGGCCCGTAATATTGAT AATACTACATATATTTTTATATATCATTGTAGGTAGAGAGTCTATCATCA TGCTTCCCTAAACCCTGCTTGGAACATGGGCCCCGGCAAGCCATTTGGAG TGGGGCTTCTAATAATTTGGGAAAAAAATTCGCCCACCATGGTTAGGCAA CAAAGAAACCCACCATGGTTTTAGGCAACAAAGAAATCCACCATGGTTTT AGGCAACAAAGAAAAACGTTCATTCTTTACACCCTCAAAACACCCTAAGA CGTTTAGGGAGAACAACAGTTTTAATGATTTGATTTAGTCTGTTTAAAGT TGTTCTAATGTTAGGTTAAACAGGTTATCGTAACAATTTGATTTTTTTGC TTTAATCTATAGGTTATTGGTGATAACAACGTTGCAGTACCCAGCCACTT GTTCAAGATAATCCTTGTGGAGAACCACGGACGACCCATCGCTGCAGGAG CTTTCGTTGTTCCAAATGCACCGATTGCAGATGATAAAGTACTGACTGAT TATCAAGTTTCGTTATCACAGATCGAAAATATGACTGGATTCATGTTTTT CCCTAAAATAGACATGAACAATTTACCAAATTTATGTTCGAGAGACAACT GTCAGTTGCTAACAAAAAATACGGCTGATTTGAATATTTTGATGAAAAAC TTGAAACGTGTTCGGAGTAAAGAGGAATTAGACAATCTGTGGAATCAAGT TCTTCAAAAGAACGTACAGCTCGACCAAAAATTCATGCAAATGTACTGGG AGAAACGGAAGACATATGAAAAAGATAATTAAATTGACTTTGAGTGTGCA TTGTTTACAAGAGAAATTAGTATCAAGAAAACAAGATGTGTTTTCAGACT TGTTTTCGTTTAATCAGGTATGCAAGGTATGATAATGTTTTTAACTGTGA GCTTAGTGTCTGATTTCGAGTTACCCTTTTGAAAAGTCCTTGTCGACTTA ATCACGAAAAATTGACCATTTTACACACACAGTGTAAATAATAGGTGGAA GGTGTTTTTTTAAAGGTGTGTCTTTGGCTGTTCGACTTAGGTGATTGTGA ATATTTTGTGAATTCGCTTAATTTTTTTTGAGAATTTTCTAAATTTTTAT TGGAGTATTTATAGATGTTGTTTATAAAATTTTATACTGAGAAAATAAAA AAATTGAATTAAAAAAT

Coding sequence (CDS) from alignment at scaffold_179:544947..550013-

>TCONS_00050566 ID=TCONS_00050566|Name=TCONS_00050566|organism=Clytia hemisphaerica|type=CDS|length=2520bp|location=Sequence derived from alignment at scaffold_179:544947..550013- (Clytia hemisphaerica)
GTTATTGGTGATAACAACGTTGCAGTACCCAGCCACTTGTTCAAGATAAT
CCTTGTGGAGAACCACGGACGACCCATCGCTGCAGGAGCTTTCGTTGTTC
CAAATGCACCGATTGCAGATGATAAAGTACTGACTGATTATCAAGTTTCG
TTATCACAGATCGAAAATATGACTGGATTCATGTTTTTCCCTAAAATAGA
CATGAACAATTTACCAAATTTATGTTCGAGAGACAACTGTCAGTTGCTAA
CAAAAAATACGGCTGATTTGAATATTTTGATGAAAAACTTGAAACGTGTT
CGGAGTAAAGAGGAATTAGACAATCTGTGGAATCAAGTTCTTCAAAAGAA
CGTACAGCTCGACCAAAAATTCATGCAAATGTACTGGGAGAAACGGAAGA
CATATGAAAAAGATAATTAAGCGACGTAAAGAAATCACAAGAGAGTATGC
AAGAGACATTTTACCTCACCAATATTCTACCACAAGATTTTGATAATAAT
GGAGGTTTTTGGTATCGTATGGAAAATTACTGCCGTTCCTTAACCAACAG
ATTTACTGATGTTTACGTTATTTCGGGTCCACTGTTCCTTTCGCATTTTG
TTCAAAATAAGAAAATGGTGACTTTTCAGATGCAATATTCCAATCATGTC
TTACAGTACGATACTGCAAGAAAAATTCCAAAATGGGTCTTAGAGCATAT
GTCAAAAGACGATTTGAAAGGCCACGCAGAACGAAGTCAGTGTAATTTCA
AGGTAGATCAAAGTGTACCGAAACAGTTTCGCTCACACAATGAAGATTAC
CTTGGAAGTGGTTTTGCTCGTGGACACATGGTGCCAGCAAGTTATTGGTG
ATAACAACGTTGCAGTACCCAGCCACTTGTTCAAGATAATCCTTGTGGAG
AACCACGGACGACCCATCGCTGCAGGAGCTTTCGTTGTTCCAAATGCACC
GATTGCAGATGATAAAGTACTGACTGATTATCAAGTTTCGTTATCACAGA
TCGAAAATATGACTGGATTCATGTTTTTCCCTAAAATAGACATGAACAAT
TTACCAAATTTATGTTCGAGAGACAACTGTCAGTTGCTAACAAAAAATAC
GGCTGATTTGAATATTTTGATGAAAAACTTGAAACGTGTTCGGAGTAAAG
AGGAATTAGACAATCTGTGGAATCAAGTTCTTCAAAAGAACGTACAGCTC
GACCAAAAATTCATGCAAATGTACTGGGAGAAACGGAAGACATATGAAAA
AGATAATTAAGCGACGTAAAGAAATCACAAGAGAGTATGCAAGAGACATT
TTACCTCACCAATATTCTACCACAAGATTTTGATAATAATGGAGGTTTTT
GGTATCGTATGGAAAATTACTGCCGTTCCTTAACCAACAGATTTACTGAT
GTTTACGTTATTTCGGGTCCACTGTTCCTTTCGCATTTTGTTCAAAATAA
GAAAATGGTGACTTTTCAGATGCAATATTCCAATCATGTCTTACAGTACG
ATACTGCAAGAAAAATTCCAAAATGGGTCTTAGAGCATATGTCAAAAGAC
GATTTGAAAGGCCACGCAGAACGAAGTCAGTGTAATTTCAAGGTAGATCA
AAGTGTACCGAAACAGTTTCGCTCACACAATGAAGATTACCTTGGAAGTG
GTTTTGCTCGTGGACACATGGTGCCAGCAAGTTATTGGTGATAACAACGT
TGCAGTACCCAGCCACTTGTTCAAGATAATCCTTGTGGAGAACCACGGAC
GACCCATCGCTGCAGGAGCTTTCGTTGTTCCAAATGCACCGATTGCAGAT
GATAAAGTACTGACTGATTATCAAGTTTCGTTATCACAGATCGAAAATAT
GACTGGATTCATGTTTTTCCCTAAAATAGACATGAACAATTTACCAAATT
TATGTTCGAGAGACAACTGTCAGTTGCTAACAAAAAATACGGCTGATTTG
AATATTTTGATGAAAAACTTGAAACGTGTTCGGAGTAAAGAGGAATTAGA
CAATCTGTGGAATCAAGTTCTTCAAAAGAACGTACAGCTCGACCAAAAAT
TCATGCAAATGTACTGGGAGAAACGGAAGACATATGAAAAAGATAATTAA
GCGACGTAAAGAAATCACAAGAGAGTATGCAAGAGACATTTTACCTCACC
AATATTCTACCACAAGATTTTGATAATAATGGAGGTTTTTGGTATCGTAT
GGAAAATTACTGCCGTTCCTTAACCAACAGATTTACTGATGTTTACGTTA
TTTCGGGTCCACTGTTCCTTTCGCATTTTGTTCAAAATAAGAAAATGGTG
ACTTTTCAGATGCAATATTCCAATCATGTCTTACAGTACGATACTGCAAG
AAAAATTCCAAAATGGGTCTTAGAGCATATGTCAAAAGACGATTTGAAAG
GCCACGCAGAACGAAGTCAGTGTAATTTCAAGGTAGATCAAAGTGTACCG
AAACAGTTTCGCTCACACAATGAAGATTACCTTGGAAGTGGTTTTGCTCG
TGGACACATGGTGCCAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032020XLOC_032020Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050566-proteinTCONS_00050566-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050566-exon-scaffold_179-1575043694:549838..550013TCONS_00050566-exon-scaffold_179-1575043694:549838..550013Clytia hemisphaericaexon
TCONS_00050566-exon-scaffold_179-1575043694:549332..549651TCONS_00050566-exon-scaffold_179-1575043694:549332..549651Clytia hemisphaericaexon
TCONS_00050566-exon-scaffold_179-1575043694:548890..549098TCONS_00050566-exon-scaffold_179-1575043694:548890..549098Clytia hemisphaericaexon
TCONS_00050566-exon-scaffold_179-1575043694:544947..545751TCONS_00050566-exon-scaffold_179-1575043694:544947..545751Clytia hemisphaericaexon
TCONS_00050566-exon-scaffold_179-1510915933:549838..550013TCONS_00050566-exon-scaffold_179-1510915933:549838..550013Clytia hemisphaericaexon
TCONS_00050566-exon-scaffold_179-1510915933:549332..549651TCONS_00050566-exon-scaffold_179-1510915933:549332..549651Clytia hemisphaericaexon
TCONS_00050566-exon-scaffold_179-1510915933:548890..549098TCONS_00050566-exon-scaffold_179-1510915933:548890..549098Clytia hemisphaericaexon
TCONS_00050566-exon-scaffold_179-1510915933:544947..545751TCONS_00050566-exon-scaffold_179-1510915933:544947..545751Clytia hemisphaericaexon
TCONS_00050566-exon-scaffold_179-1491911889:549838..550013TCONS_00050566-exon-scaffold_179-1491911889:549838..550013Clytia hemisphaericaexon
TCONS_00050566-exon-scaffold_179-1491911889:549332..549651TCONS_00050566-exon-scaffold_179-1491911889:549332..549651Clytia hemisphaericaexon
TCONS_00050566-exon-scaffold_179-1491911889:548890..549098TCONS_00050566-exon-scaffold_179-1491911889:548890..549098Clytia hemisphaericaexon
TCONS_00050566-exon-scaffold_179-1491911889:544947..545751TCONS_00050566-exon-scaffold_179-1491911889:544947..545751Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:544947..550013 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.79403 1.73869 4.24048 4.67156 7.82053 5.98026 7.48081 7.21932 4.92625 4.81572 5.10001 3.55068 2.77313 2.64259 2.02295 3.2209 5.08503 4.88754 1.69903 2.19392 3.56582 4.71684 2.85127 3.5809 3.96438 4.2665 3.06581 1.82632 3.15244 3.61853
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001604DNA/RNA_non-sp_Endonuclease
IPR020821Extracellular_endonuc_su_A
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
Blast
BLAST of TCONS_00050566 vs. Swiss-Prot (Human)
Match: EXOG (Nuclease EXOG, mitochondrial OS=Homo sapiens GN=EXOG PE=1 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 6.610e-88
Identity = 134/290 (46.21%), Postives = 191/290 (65.86%), Query Frame = 1
Query:  247 VINRYGLP-TGDFVMQYSNHVLQYDTARKIPKWVLEHMSKDDLKGHAERSQCNFKVDQSVPKQFRSHNEDYLGSGFARGHMVPASDVKKSQESMQETFYLTNILPQDFDNNGGFWYRMENYCRSLTNRFTDVYVISGPLFLSHFVQN-KKMVTFQVIGDNNVAVPSHLFKIILVENHG---RPIAAGAFVVPNAPIADDKVLTDYQVSLSQIENMTGFMFFPKID-MNNLPNLCSRDNCQLLTKNTADLNILMKNLKRVRSKEELDNLWNQVLQKNVQLDQKFMQMYWEK 1098
            V+ ++G P TG     Y+NH L YD A+++P+WVLEH+SK  + G A+R  C FK D ++P  F + NEDY+GSG++RGHM PA + K S ++M ETFYL+NI+PQDFDNN G+W R+E YCR LT RF DV+V+SGPL L     + KK+V++QVIG++NVAVPSHL+K+IL         P+A GAFVVPN  I     LT++QVSL  +E ++G +FFP +D  +++ N+CS D C+LL      L +  + ++  RS   L+ +   +    ++ D  FM  Y +K
Sbjct:   61 VLEQFGFPLTGTEARCYTNHALSYDQAKRVPRWVLEHISKSKIMGDADRKHCKFKPDPNIPPTFSAFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQDFDNNSGYWNRIEMYCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLYKVILARRSSVSTEPLALGAFVVPNEAIGFQPQLTEFQVSLQDLEKLSGLVFFPHLDRTSDIRNICSVDTCKLLDFQEFTLYLSTRKIEGARSVLRLEKIMENLKNAEIEPDDYFMSRYEKK 350          
The following BLAST results are available for this feature:
BLAST of TCONS_00050566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOG6.610e-8846.21Nuclease EXOG, mitochondrial OS=Homo sapiens GN=EX... [more]
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