TCONS_00050568 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050568
Unique NameTCONS_00050568
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050568 ID=TCONS_00050568|Name=TCONS_00050568|organism=Clytia hemisphaerica|type=transcript|length=310bp
GGCATGTTTAGTTCTTGGCGACTTAGCGTCCTCTATGTTGGGGTGGTCAT
CGGAGTGGTAAACATCGGTGTCCTCCTTTGTGCTGTATTTATACGCTGTA
TTATAATCAGAGTCTTCTCCCTTTCTTCTTTTCGGGGTTCTTTCCACGGT
CACTCATTTTTCTTATGTtaaatttttgtaattatttctaaaaaagtaaa
atattactGTACATACAGGTCTtgtgtttattttgttttatagCCATGTA
AATAGTTagcattttcataaaaaaattcatagGTAATTGCTTTGGTTACT
TCCCCATCCC
Run BLAST on NCBI

transcript from alignment at scaffold_179:12098..12407

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050568 ID=TCONS_00050568|Name=TCONS_00050568|organism=Clytia hemisphaerica|type=transcript|length=310bp|location=Sequence derived from alignment at scaffold_179:12098..12407 (Clytia hemisphaerica)
GGGATGGGGAAGTAACCAAAGCAATTACctatgaatttttttatgaaaat
gctAACTATTTACATGGctataaaacaaaataaacacaAGACCTGTATGT
ACagtaatattttacttttttagaaataattacaaaaatttaACATAAGA
AAAATGAGTGACCGTGGAAAGAACCCCGAAAAGAAGAAAGGGAGAAGACT
CTGATTATAATACAGCGTATAAATACAGCACAAAGGAGGACACCGATGTT
TACCACTCCGATGACCACCCCAACATAGAGGACGCTAAGTCGCCAAGAAC
TAAACATGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032022XLOC_032022Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050568-exon-scaffold_179-1491911889:12098..12407TCONS_00050568-exon-scaffold_179-1491911889:12098..12407Clytia hemisphaericaexon
TCONS_00050568-exon-scaffold_179-1510915933:12098..12407TCONS_00050568-exon-scaffold_179-1510915933:12098..12407Clytia hemisphaericaexon
TCONS_00050568-exon-scaffold_179-1575043694:12098..12407TCONS_00050568-exon-scaffold_179-1575043694:12098..12407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:12098..12407 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.8103	18.3277	13.9688	8.69397	120.607	92.1908	48.5085	63.8329	3.28806	4.36053	3.43726	1.70959	2.70329	1.92347	2.43126	3.23001	1.76689	6.0352	0.787958	0	0.922283	0	4.41193	5.75247	32.3209	52.1316	0.954582	0.243212	3.02229	1.73899
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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