TCONS_00050572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050572
Unique NameTCONS_00050572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050572 ID=TCONS_00050572|Name=TCONS_00050572|organism=Clytia hemisphaerica|type=transcript|length=484bp
AAGGAAAGTCTGGTAGTcgaggaaaaaagaaatttgccaCATGCAATTTC
TTCAATGAGTTGCAATTCTTGAAAGACACTCTTTTGAATAAACAGACTGA
TAGCAACCTGATGATTTCAAACGAAAATAAGGAGAATGAAGCTTCAGTTG
AAACTGATAACGAAAACGCATTAGCGGATGTCACACCTGTAAAACCATTA
CCCAGCAacaagaaatcaagaaaacgaaatcACCCCCAAGCAGCAGAATC
CCTTGAAAAAGTCAGTCCTATTGATCTAACCATCCTGGAGACTatgaaat
cattaaaaaaagatgacgatgatgatgaaCTGAAAGAAAGGGACGGAAAT
CATTGGTTCTGTATGAGTCTCGTTGACACATTGAAGGCTTTGCCTCCAAG
AAAAAATGCTCTtgcgaaattaaaaattcaGCAAACCCTTTTTGAAATAG
AATATGAAGAATGAAAGACAGATTTACAtgggtt
Run BLAST on NCBI

protein sequence of TCONS_00050572-protein

>TCONS_00050572-protein ID=TCONS_00050572-protein|Name=TCONS_00050572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
GKSGSRGKKKFATCNFFNELQFLKDTLLNKQTDSNLMISNENKENEASVE
TDNENALADVTPVKPLPSNKKSRKRNHPQAAESLEKVSPIDLTILETMKS
LKKDDDDDELKERDGNHWFCMSLVDTLKALPPRKNALAKLKIQQTLFEIE
YEE
Run BLAST on NCBI

transcript from alignment at scaffold_179:61067..61550

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050572 ID=TCONS_00050572|Name=TCONS_00050572|organism=Clytia hemisphaerica|type=transcript|length=484bp|location=Sequence derived from alignment at scaffold_179:61067..61550 (Clytia hemisphaerica)
aacccaTGTAAATCTGTCTTTCATTCTTCATATTCTATTTCAAAAAGGGT
TTGCtgaatttttaatttcgcaAGAGCATTTTTTCTTGGAGGCAAAGCCT
TCAATGTGTCAACGAGACTCATACAGAACCAATGATTTCCGTCCCTTTCT
TTCAGttcatcatcatcgtcatctttttttaatgatttcatAGTCTCCAG
GATGGTTAGATCAATAGGACTGACTTTTTCAAGGGATTCTGCTGCTTGGG
GGTgatttcgttttcttgatttcttgtTGCTGGGTAATGGTTTTACAGGT
GTGACATCCGCTAATGCGTTTTCGTTATCAGTTTCAACTGAAGCTTCATT
CTCCTTATTTTCGTTTGAAATCATCAGGTTGCTATCAGTCTGTTTATTCA
AAAGAGTGTCTTTCAAGAATTGCAACTCATTGAAGAAATTGCATGtggca
aatttcttttttcctcgACTACCAGACTTTCCTT

Coding sequence (CDS) from alignment at scaffold_179:61067..61550

>TCONS_00050572 ID=TCONS_00050572|Name=TCONS_00050572|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_179:61067..61550 (Clytia hemisphaerica)
TCATTCTTCATATTCTATTTCAAAAAGGGTTTGCtgaatttttaatttcg
caAGAGCATTTTTTCTTGGAGGCAAAGCCTTCAATGTGTCAACGAGACTC
ATACAGAACCAATGATTTCCGTCCCTTTCTTTCAGttcatcatcatcgtc
atctttttttaatgatttcatAGTCTCCAGGATGGTTAGATCAATAGGAC
TGACTTTTTCAAGGGATTCTGCTGCTTGGGGGTgatttcgttttcttgat
ttcttgtTGCTGGGTAATGGTTTTACAGGTGTGACATCCGCTAATGCGTT
TTCGTTATCAGTTTCAACTGAAGCTTCATTCTCCTTATTTTCGTTTGAAA
TCATCAGGTTGCTATCAGTCTGTTTATTCAAAAGAGTGTCTTTCAAGAAT
TGCAACTCATTGAAGAAATTGCATGtggcaaatttcttttttcctcgACT
ACCAGACTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032026XLOC_032026Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050572-proteinTCONS_00050572-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050572-exon-scaffold_179-1491911889:61067..61550TCONS_00050572-exon-scaffold_179-1491911889:61067..61550Clytia hemisphaericaexon
TCONS_00050572-exon-scaffold_179-1510915933:61067..61550TCONS_00050572-exon-scaffold_179-1510915933:61067..61550Clytia hemisphaericaexon
TCONS_00050572-exon-scaffold_179-1575043694:61067..61550TCONS_00050572-exon-scaffold_179-1575043694:61067..61550Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:61067..61550 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16109	0.50322	0.292143	0.714542	6.95909	7.14891	4.97588	6.67698	0.326143	2.96252	1.17634	1.7184	1.45861	0.980151	0.439537	0.550305	0.290542	1.19118	0	0.143508	0.249468	0	0.295841	0.403443	0.692561	1.73066	0.176898	0.188791	0.715955	0.583556
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004210BESS_motif
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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