|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050573 ID=TCONS_00050573|Name=TCONS_00050573|organism=Clytia hemisphaerica|type=transcript|length=1040bp
AAAAGATGATATTGATCAACATCCTCCATTTATTTGTGGGAAATGTTTTG
TAAAGCTGAAGCCTGTCAATCCAGACCATAAACAAAGAAACTATGCTCTT
CAAAATATTGCACCATTTAAAGGACACAATGATAATGATACGTCTTGCTG
CAGACATTGTAAACTTCATCGTCTACCTGAATTTAAATTCATGATGATAA
AAATAGAGATTGTTACTGtattcaattttgaattcatttcGACAGTTGCA
ACTGAAAATGGTTATACAGCTATAATCAACAAGAAAACCGACGGTGACGA
TGCTGATGTTGAAACTCTAATTTTAACCTGGGAGGAACTGAGTCCTGATG
GGAGTATGAATTCTCACAAACGAATTGTGGTGGACCAAATTTTCAGTTGG
AAATTTTTTATGTGGAACAAAGTGATCCACAAagagacctcaaattttgt
TGCATCACTTCCATGTAAGTTGAATCCAGGAAAcattgaacaatttttga
aagacATCAAAACCTGCAAGACTTGCAgaggaaacaaagattttcaGAGC
CTGTTAACCTGCCGTATGGAAGGTATCAATTGGGCCAGTGCTCTTCTACA
CAATGATGATaaactaaatagaccttttcgcctttgcgtccgccatatta
aattgtatgcaaaaaaaatggtGGCGAatttgccgtggtgaaattccctt
agaaagtatgcaaaacatatgcaaaaagaaagtataaattaaaaacttac
atgcataattggcattatattaaagtgtaatcttgtagaagaaagattaa
atttgcttctcttgaaaactaaaaacaattatattcactcatctcttaga
acaagcacttcaaaagaccataacattagacagaaactcaaactgaaaaa
tcacccacgaaggtaaaaaacaatccttattcggctgacggcaaattatt
ctcctggggatagagccgccaaatgatcaaatcaaaacattgagaaagtg
tgacgtcataattactgctttcagtttgcgtgttttgaaa Run BLAST on NCBI protein sequence of TCONS_00050573-protein >TCONS_00050573-protein ID=TCONS_00050573-protein|Name=TCONS_00050573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
KDDIDQHPPFICGKCFVKLKPVNPDHKQRNYALQNIAPFKGHNDNDTSCC
RHCKLHRLPEFKFMMIKIEIVTVFNFEFISTVATENGYTAIINKKTDGDD
ADVETLILTWEELSPDGSMNSHKRIVVDQIFSWKFFMWNKVIHKETSNFV
ASLPCKLNPGNIEQFLKDIKTCKTCRGNKDFQSLLTCRMEGINWASALLH
NDDKLNRPFRLCVRHIKLYAKKMVANLPW Run BLAST on NCBI transcript from alignment at scaffold_179:116962..118001 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050573 ID=TCONS_00050573|Name=TCONS_00050573|organism=Clytia hemisphaerica|type=transcript|length=1040bp|location=Sequence derived from alignment at scaffold_179:116962..118001 (Clytia hemisphaerica)
tttcaaaacacgcaaactgaaagcagtaattatgacgtcacactttctca
atgttttgatttgatcatttggcggctctatccccaggagaataatttgc
cgtcagccgaataaggattgttttttaccttcgtgggtgatttttcagtt
tgagtttctgtctaatgttatggtcttttgaagtgcttgttctaagagat
gagtgaatataattgtttttagttttcaagagaagcaaatttaatctttc
ttctacaagattacactttaatataatgccaattatgcatgtaagttttt
aatttatactttctttttgcatatgttttgcatactttctaagggaattt
caccacggcaaatTCGCCaccattttttttgcatacaatttaatatggcg
gacgcaaaggcgaaaaggtctatttagtttATCATCATTGTGTAGAAGAG
CACTGGCCCAATTGATACCTTCCATACGGCAGGTTAACAGGCTCtgaaaa
tctttgtttcctcTGCAAGTCTTGCAGGTTTTGATgtctttcaaaaattg
ttcaatgTTTCCTGGATTCAACTTACATGGAAGTGATGCAacaaaatttg
aggtctctTTGTGGATCACTTTGTTCCACATAAAAAATTTCCAACTGAAA
ATTTGGTCCACCACAATTCGTTTGTGAGAATTCATACTCCCATCAGGACT
CAGTTCCTCCCAGGTTAAAATTAGAGTTTCAACATCAGCATCGTCACCGT
CGGTTTTCTTGTTGATTATAGCTGTATAACCATTTTCAGTTGCAACTGTC
gaaatgaattcaaaattgaataCAGTAACAATCTCTATTTTTATCATCAT
GAATTTAAATTCAGGTAGACGATGAAGTTTACAATGTCTGCAGCAAGACG
TATCATTATCATTGTGTCCTTTAAATGGTGCAATATTTTGAAGAGCATAG
TTTCTTTGTTTATGGTCTGGATTGACAGGCTTCAGCTTTACAAAACATTT
CCCACAAATAAATGGAGGATGTTGATCAATATCATCTTTT Coding sequence (CDS) from alignment at scaffold_179:116962..118001 >TCONS_00050573 ID=TCONS_00050573|Name=TCONS_00050573|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_179:116962..118001 (Clytia hemisphaerica)
tcaccacggcaaatTCGCCaccattttttttgcatacaatttaatatggc
ggacgcaaaggcgaaaaggtctatttagtttATCATCATTGTGTAGAAGA
GCACTGGCCCAATTGATACCTTCCATACGGCAGGTTAACAGGCTCtgaaa
atctttgtttcctcTGCAAGTCTTGCAGGTTTTGATgtctttcaaaaatt
gttcaatgTTTCCTGGATTCAACTTACATGGAAGTGATGCAacaaaattt
gaggtctctTTGTGGATCACTTTGTTCCACATAAAAAATTTCCAACTGAA
AATTTGGTCCACCACAATTCGTTTGTGAGAATTCATACTCCCATCAGGAC
TCAGTTCCTCCCAGGTTAAAATTAGAGTTTCAACATCAGCATCGTCACCG
TCGGTTTTCTTGTTGATTATAGCTGTATAACCATTTTCAGTTGCAACTGT
CgaaatgaattcaaaattgaataCAGTAACAATCTCTATTTTTATCATCA
TGAATTTAAATTCAGGTAGACGATGAAGTTTACAATGTCTGCAGCAAGAC
GTATCATTATCATTGTGTCCTTTAAATGGTGCAATATTTTGAAGAGCATA
GTTTCTTTGTTTATGGTCTGGATTGACAGGCTTCAGCTTTACAAAACATT
TCCCACAAATAAATGGAGGATGTTGATCAATATCATCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050573-exon-scaffold_179-1491911889:116962..118001 | TCONS_00050573-exon-scaffold_179-1491911889:116962..118001 | Clytia hemisphaerica | exon |
| TCONS_00050573-exon-scaffold_179-1510915933:116962..118001 | TCONS_00050573-exon-scaffold_179-1510915933:116962..118001 | Clytia hemisphaerica | exon |
| TCONS_00050573-exon-scaffold_179-1575043694:116962..118001 | TCONS_00050573-exon-scaffold_179-1575043694:116962..118001 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:116962..118001 . |
Blast
The following BLAST results are available for this feature:
|
