TCONS_00050584 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050584
Unique NameTCONS_00050584
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2018

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050584 ID=TCONS_00050584|Name=TCONS_00050584|organism=Clytia hemisphaerica|type=transcript|length=2018bp
TTTGCAAAATAAAACTTATGGGGACGGGAGTTAACAATCAACTCAGcaat
cattcaaaaaaaaaggtgggtgtttattttgataataaataaatcaaaaa
atctcttttcaaaatttaaattatagtacgatgaaaacaaatttttacat
gGTGATTAAAAGTTACCACAATAAATTTAATGATGTCTGGAAATCTGAAT
CTGAGTTCCCCCTTATAGTTCATTTtggcaacaaaaataaaaaaaagtgt
actttttTACCTAAACTTTAACTTTATTAACCctaaaaaaagcttttaaa
aagcATAATCTGGCAAAAgtttaaataaaatttaaatactATCGTTGGTA
TGGAACACTTCGAGCTCAAATAAAAATCAGAGTTTCATCATGAAACAAGA
TTCTCCattcatcaaaataaattttggatCAAATCAGAAATTGATAGAGT
CACTTTGCAGTAATAAAGCCTGAAGTCATCGTTAAACTCTTTTGAGTTGC
ACTATCAAGCTCTTTCCAGGCAGTTGTACGttggattttgaaaagatttt
ttctcacaAACAACTTTACAGAGTCAAATGCATCTGTTATGAAGCTTTTA
GAGTGTGACAACTCTTTGCTTTCATTTATTCTGAGCTCTTTTTCTAAACT
ATTACTGAGTATTTGTAATTGAGCATGGATCTCTAAACAGTTATTGATGG
ATACATGACCTTTCAAAGCAGATTCCATCACTTCCAAGATCATTTTATTA
ATGTGAATATTCTTTTCCTCCAACAAACAAAAGAGAAACCCAGGTGTTTC
AGTTATTCCTTTGAAATGAGCACAAGTgtatttcaaacaaaataaCTCAA
TGTCGGAGAACAACTTGGTAGCTTCAACACCCCATTTCACATTTGGTAGC
GATCCTTTGATTTTCACTATATCTTTTATGATTCCAATGATGTTAATGTC
ATTGATAGATTCTGTAGTTTTTGACACAACAATCTCTCGCACTTGTTTAG
GGATTTTCAATAAATTCTTATTTGATAGAATTTTAGCAAAATGTTTGATA
TACCACTGATCACAGCTTGAAATAAGTTCTTCAAAGCCAAGAATCTGGGA
ATCCATGAAAAATTTATAGATATTTGTTAGTCTAATAAGACAAACATCGC
AAGGCtgatgataaaaatgaaaataatatgcTTTCAAATGTAATTTGATT
ACATCTAGAAAGCCTTGAATATTCAGCATATCTTGCGCCATCATGGTGTC
AATGACTTCAATATCTGTGGGCATCTCGACTTCAGCATAATacacaaaat
tcaaaatgcatTGAAATACATTTTTATTGATATTCATAATTTTGACAATG
CCTTTAGAAGATTCTAACCAGGAACCAAACAGCATTGCTTTGAAATATTC
ACTGCATTGCCCAACAAAGAGCTTATGACATTTAAATTTTGTATCGTCTT
TGAGCTCAAACACAACATCATGAAAAGTCTCTGTCAAAGTGGAATccaat
aaaactttaaattttaagCATAATTTATCAAATGAACCAATAAAAGTTAC
TTCTGGAGAATAAAGAATATTGAATTCTTTAATTTCATCTTCATTTAGAT
GCTGGTCATCAAGTCTCACTTCCTCTTCTGATGATTTCTGCAAGAGCTGA
AGCAAATCCTGTTTCAAAGCAAATGCAACGCATTTATTGAAGCAGAAATA
TTGACCtttgattgcaatttttgtaTCTGCAAACTCCTCATCTTGAAATG
TGATTTGACAGTTCTTGATAAAGTTCAACTGACTTTGTGATTTTAACTTT
TCAAGTTCAATTTTATACTTTGATTTATAGGCAGAAGTTGAAAATACCTT
GCAATCCATTTATTTGATAATTATCTAGAAAATGATAAACAATAATACAG
AAATTTCCAGGTACTTTGCTGTACAAGCTTTGTTGTCGTTATGAAAGAAT
CTAATTCTACTTAGAAGCAAGAAGCCTTGCCCTAGCTTGCTGACTTTAAA
GTTTGAGACATTAGGGTA
Run BLAST on NCBI

protein sequence of TCONS_00050584-protein

>TCONS_00050584-protein ID=TCONS_00050584-protein|Name=TCONS_00050584-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp
MDCKVFSTSAYKSKYKIELEKLKSQSQLNFIKNCQITFQDEEFADTKIAI
KGQYFCFNKCVAFALKQDLLQLLQKSSEEEVRLDDQHLNEDEIKEFNILY
SPEVTFIGSFDKLCLKFKVLLDSTLTETFHDVVFELKDDTKFKCHKLFVG
QCSEYFKAMLFGSWLESSKGIVKIMNINKNVFQCILNFVYYAEVEMPTDI
EVIDTMMAQDMLNIQGFLDVIKLHLKAYYFHFYHQPCDVCLIRLTNIYKF
FMDSQILGFEELISSCDQWYIKHFAKILSNKNLLKIPKQVREIVVSKTTE
SINDINIIGIIKDIVKIKGSLPNVKWGVEATKLFSDIELFCLKYTCAHFK
GITETPGFLFCLLEEKNIHINKMILEVMESALKGHVSINNCLEIHAQLQI
LSNSLEKELRINESKELSHSKSFITDAFDSVKLFVRKNLFKIQRTTAWKE
LDSATQKSLTMTSGFITAK
Run BLAST on NCBI

transcript from alignment at scaffold_179:266057..268074

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050584 ID=TCONS_00050584|Name=TCONS_00050584|organism=Clytia hemisphaerica|type=transcript|length=2018bp|location=Sequence derived from alignment at scaffold_179:266057..268074 (Clytia hemisphaerica)
TACCCTAATGTCTCAAACTTTAAAGTCAGCAAGCTAGGGCAAGGCTTCTT
GCTTCTAAGTAGAATTAGATTCTTTCATAACGACAACAAAGCTTGTACAG
CAAAGTACCTGGAAATTTCTGTATTATTGTTTATCATTTTCTAGATAATT
ATCAAATAAATGGATTGCAAGGTATTTTCAACTTCTGCCTATAAATCAAA
GTATAAAATTGAACTTGAAAAGTTAAAATCACAAAGTCAGTTGAACTTTA
TCAAGAACTGTCAAATCACATTTCAAGATGAGGAGTTTGCAGAtacaaaa
attgcaatcaaaGGTCAATATTTCTGCTTCAATAAATGCGTTGCATTTGC
TTTGAAACAGGATTTGCTTCAGCTCTTGCAGAAATCATCAGAAGAGGAAG
TGAGACTTGATGACCAGCATCTAAATGAAGATGAAATTAAAGAATTCAAT
ATTCTTTATTCTCCAGAAGTAACTTTTATTGGTTCATTTGATAAATTATG
cttaaaatttaaagttttattggATTCCACTTTGACAGAGACTTTTCATG
ATGTTGTGTTTGAGCTCAAAGACGATACAAAATTTAAATGTCATAAGCTC
TTTGTTGGGCAATGCAGTGAATATTTCAAAGCAATGCTGTTTGGTTCCTG
GTTAGAATCTTCTAAAGGCATTGTCAAAATTATGAATATCAATAAAAATG
TATTTCAatgcattttgaattttgtgtATTATGCTGAAGTCGAGATGCCC
ACAGATATTGAAGTCATTGACACCATGATGGCGCAAGATATGCTGAATAT
TCAAGGCTTTCTAGATGTAATCAAATTACATTTGAAAgcatattattttc
atttttatcatcaGCCTTGCGATGTTTGTCTTATTAGACTAACAAATATC
TATAAATTTTTCATGGATTCCCAGATTCTTGGCTTTGAAGAACTTATTTC
AAGCTGTGATCAGTGGTATATCAAACATTTTGCTAAAATTCTATCAAATA
AGAATTTATTGAAAATCCCTAAACAAGTGCGAGAGATTGTTGTGTCAAAA
ACTACAGAATCTATCAATGACATTAACATCATTGGAATCATAAAAGATAT
AGTGAAAATCAAAGGATCGCTACCAAATGTGAAATGGGGTGTTGAAGCTA
CCAAGTTGTTCTCCGACATTGAGttattttgtttgaaatacACTTGTGCT
CATTTCAAAGGAATAACTGAAACACCTGGGTTTCTCTTTTGTTTGTTGGA
GGAAAAGAATATTCACATTAATAAAATGATCTTGGAAGTGATGGAATCTG
CTTTGAAAGGTCATGTATCCATCAATAACTGTTTAGAGATCCATGCTCAA
TTACAAATACTCAGTAATAGTTTAGAAAAAGAGCTCAGAATAAATGAAAG
CAAAGAGTTGTCACACTCTAAAAGCTTCATAACAGATGCATTTGACTCTG
TAAAGTTGTTtgtgagaaaaaatcttttcaaaatccaaCGTACAACTGCC
TGGAAAGAGCTTGATAGTGCAACTCAAAAGAGTTTAACGATGACTTCAGG
CTTTATTACTGCAAAGTGACTCTATCAATTTCTGATTTGatccaaaattt
attttgatgaatGGAGAATCTTGTTTCATGATGAAACTCTGATTTTTATT
TGAGCTCGAAGTGTTCCATACCAACGATagtatttaaattttatttaaac
TTTTGCCAGATTATgctttttaaaagctttttttagGGTTAATAAAGTTA
AAGTTTAGGTAaaaaagtacacttttttttatttttgttgccaAAATGAA
CTATAAGGGGGAACTCAGATTCAGATTTCCAGACATCATTAAATTTATTG
TGGTAACTTTTAATCACcatgtaaaaatttgttttcatcgtactataatt
taaattttgaaaagagattttttgatttatttattatcaaaataaacacc
cacctttttttttgaatgattgCTGAGTTGATTGTTAACTCCCGTCCCCA
TAAGTTTTATTTTGCAAA

Coding sequence (CDS) from alignment at scaffold_179:266057..268074

>TCONS_00050584 ID=TCONS_00050584|Name=TCONS_00050584|organism=Clytia hemisphaerica|type=CDS|length=1410bp|location=Sequence derived from alignment at scaffold_179:266057..268074 (Clytia hemisphaerica)
ATGGATTGCAAGGTATTTTCAACTTCTGCCTATAAATCAAAGTATAAAAT
TGAACTTGAAAAGTTAAAATCACAAAGTCAGTTGAACTTTATCAAGAACT
GTCAAATCACATTTCAAGATGAGGAGTTTGCAGAtacaaaaattgcaatc
aaaGGTCAATATTTCTGCTTCAATAAATGCGTTGCATTTGCTTTGAAACA
GGATTTGCTTCAGCTCTTGCAGAAATCATCAGAAGAGGAAGTGAGACTTG
ATGACCAGCATCTAAATGAAGATGAAATTAAAGAATTCAATATTCTTTAT
TCTCCAGAAGTAACTTTTATTGGTTCATTTGATAAATTATGcttaaaatt
taaagttttattggATTCCACTTTGACAGAGACTTTTCATGATGTTGTGT
TTGAGCTCAAAGACGATACAAAATTTAAATGTCATAAGCTCTTTGTTGGG
CAATGCAGTGAATATTTCAAAGCAATGCTGTTTGGTTCCTGGTTAGAATC
TTCTAAAGGCATTGTCAAAATTATGAATATCAATAAAAATGTATTTCAat
gcattttgaattttgtgtATTATGCTGAAGTCGAGATGCCCACAGATATT
GAAGTCATTGACACCATGATGGCGCAAGATATGCTGAATATTCAAGGCTT
TCTAGATGTAATCAAATTACATTTGAAAgcatattattttcatttttatc
atcaGCCTTGCGATGTTTGTCTTATTAGACTAACAAATATCTATAAATTT
TTCATGGATTCCCAGATTCTTGGCTTTGAAGAACTTATTTCAAGCTGTGA
TCAGTGGTATATCAAACATTTTGCTAAAATTCTATCAAATAAGAATTTAT
TGAAAATCCCTAAACAAGTGCGAGAGATTGTTGTGTCAAAAACTACAGAA
TCTATCAATGACATTAACATCATTGGAATCATAAAAGATATAGTGAAAAT
CAAAGGATCGCTACCAAATGTGAAATGGGGTGTTGAAGCTACCAAGTTGT
TCTCCGACATTGAGttattttgtttgaaatacACTTGTGCTCATTTCAAA
GGAATAACTGAAACACCTGGGTTTCTCTTTTGTTTGTTGGAGGAAAAGAA
TATTCACATTAATAAAATGATCTTGGAAGTGATGGAATCTGCTTTGAAAG
GTCATGTATCCATCAATAACTGTTTAGAGATCCATGCTCAATTACAAATA
CTCAGTAATAGTTTAGAAAAAGAGCTCAGAATAAATGAAAGCAAAGAGTT
GTCACACTCTAAAAGCTTCATAACAGATGCATTTGACTCTGTAAAGTTGT
TtgtgagaaaaaatcttttcaaaatccaaCGTACAACTGCCTGGAAAGAG
CTTGATAGTGCAACTCAAAAGAGTTTAACGATGACTTCAGGCTTTATTAC
TGCAAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032038XLOC_032038Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050584-proteinTCONS_00050584-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050584-exon-scaffold_179-1491911889:266057..268074TCONS_00050584-exon-scaffold_179-1491911889:266057..268074Clytia hemisphaericaexon
TCONS_00050584-exon-scaffold_179-1510915933:266057..268074TCONS_00050584-exon-scaffold_179-1510915933:266057..268074Clytia hemisphaericaexon
TCONS_00050584-exon-scaffold_179-1575043694:266057..268074TCONS_00050584-exon-scaffold_179-1575043694:266057..268074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:266057..268074 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.7679	15.3379	10.3255	8.88536	7.14085	4.17985	5.67316	5.14591	3.38793	3.45955	6.25885	2.3641	2.66081	2.42464	2.33861	2.65309	2.69422	2.41441	2.18902	3.0542	3.22351	2.05326	18.1691	17.8267	3.26373	4.26584	8.30953	6.34259	10.7749	11.0889
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00050584 vs. Swiss-Prot (Human)
Match: BTBD8 (BTB/POZ domain-containing protein 8 OS=Homo sapiens GN=BTBD8 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.148e-18
Identity = 44/155 (28.39%), Postives = 80/155 (51.61%), Query Frame = -1 
Query:  984 DDTKFKCHKLFVGQCSEYFKAMLFGSWLESSKGIVKIMNINKNVFQCILNFVYYAEVEMPTDIEVIDTMMAQDMLNIQGFLDVIKLHLKAYYFHFYHQPCDVCLIRLTNIYKFFMDSQILGFEELISSCDQWYIKHFAKILSNKNLLKIPKQVRE 1448
            D  +FK H+  +   S YF AML G W ESS+  V +  I+      +++F+Y   +++P    V   +   DM  ++G  +V    L+  Y +F+ +P       LT+I +  + +  +G E L + C +W +KHFA+  S ++   IP ++++
Sbjct:  213 DGKRFKAHRAILSARSSYFAAMLSGCWAESSQEYVTLQGISHVELNVMMHFIYGGTLDIPDKTNVGQILNMADMYGLEGLKEVAIYILRRDYCNFFQKPVPRT---LTSILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANIPPEIQK 364
The following BLAST results are available for this feature:
BLAST of TCONS_00050584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BTBD81.148e-1828.39BTB/POZ domain-containing protein 8 OS=Homo sapien... [more]
back to top