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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050588 ID=TCONS_00050588|Name=TCONS_00050588|organism=Clytia hemisphaerica|type=transcript|length=1683bp
GTGTGCACTCGTTAGGATTTTTGGTGCAGAGCAAGGAAGAATTCagcaaa
atgaacttcaatctGTAGTACTTACTTTTAAATCattaaatcttttcttt
ctttttttaaaaatcatagtccttataaaaaaccctggtctggaagcata
ttgttttaactttttgtcggatttttcctttgttattatcaaaaggtgaa
aatcgatttgctcagtttttgatcataTTACCAAGtattcctcttgggat
tggtttaagatttaatcacatgatcaataagtgagcaaaacaaactaatt
tctcaatgcaatttcaagtaagaaacaatggaaagaaacaaaaggcttcc
ccTGGGGTTTTTTATACAGACTATGTTTAAATCAATAAgaaattatcagg
gaaacaaataaaaaactgcATCTAAAtatctcttttcttttcaaagatAT
TGATGTTTTTCGACATCAAGGTAAAAACACGACTTAGCGCTGACTTACGT
ACAGCACCGGAAGATTCTTGACCCACATGGAAACAAATGGCAGTCGCTaa
tgagctggttcatcttttcaagaACGGTTTTTTTAGTATACCCAGGGTAA
Gagtaggctacaatctatcacatgctgctttatttgaaaatctacaggcc
gtctggaatttctaaaaatagaataaaTTGTGATTTTTCAACGTAAGATT
GCAGATTTTTGTAAGcagcatacaccatctgaaagctaaggttttcagct
ttctagtgctaaaatttgtttttagctatcatctCCAGCTCACTAGCGAT
AAGCAAAAGTTTATACAGTCACCGGGCTCATTTTCAGACCGCGCTAGAGG
AGTGAACGGGAGCTGTGGTCATACATCATATGATATTTTCACGTGTTTTA
AATTGGCAAAGTTTAGTAAATTTGACCAGATATGGGTGAATTGCGCCAAA
TCTGTACAGATCTGTACTGTGGTTTCGTAAACAAGGCAAACTGTATTCAA
AGTACCATAGAAGTGGTGACGGACAGGACacaattttgttgttttcaaag
caaaatttagtgTTCAAAGCTTCTTAGAGGAAAAACTAATCAAAATCTTT
ACAGTTTTCTCCACTATTTGGTCACATCTTGATAGGAGAAtactcaaaat
acaaaaatactttCTCAGAACATACAGTTCTTGAATAAATAAGCATGTTG
TGCCGAATTCACctttgaaaacaacaaaattatgtCCCGCCCGTCacaca
ttttcagttataactcAAATTTGGCTCAAGAAAACagcctgaaattttca
aatatacTTCCATTATAGAGTAATACTTTTACATAAAATTGAGTGAATAC
AAGACAAGCATATGCGTGTTGGTAATATTTCAAAGACAAAACAAAGTATC
AAAAAATGACTTAATCCTGACTGATACCTTCTGTGTCGCAGTACCAAATC
CATTCTAATACCTAACACATCTACTTCTACAGAAACTTATAGACAGTTTG
TCTTGTTTTCAAAACCACGGTACAGATTTAATGCAATTCACCCATatcca
atgttttgatttttcaagcaggGGTTTCTGTAAAATGATATGGCTTGGCT
GGAATGGACACCATAACAGTAGTGCCGGAATTAGGGTCGAATGTCCGTAT
AAAAGATGAACGTTTGGGAACTTGacgtttttg Run BLAST on NCBI transcript from alignment at scaffold_179:394929..396611 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050588 ID=TCONS_00050588|Name=TCONS_00050588|organism=Clytia hemisphaerica|type=transcript|length=1683bp|location=Sequence derived from alignment at scaffold_179:394929..396611 (Clytia hemisphaerica)
caaaaacgtCAAGTTCCCAAACGTTCATCTTTTATACGGACATTCGACCC
TAATTCCGGCACTACTGTTATGGTGTCCATTCCAGCCAAGCCATATCATT
TTACAGAAACCcctgcttgaaaaatcaaaacattggatATGGGTGAATTG
CATTAAATCTGTACCGTGGTTTTGAAAACAAGACAAACTGTCTATAAGTT
TCTGTAGAAGTAGATGTGTTAGGTATTAGAATGGATTTGGTACTGCGACA
CAGAAGGTATCAGTCAGGATTAAGTCATTTTTTGATACTTTGTTTTGTCT
TTGAAATATTACCAACACGCATATGCTTGTCTTGTATTCACTCAATTTTA
TGTAAAAGTATTACTCTATAATGGAAgtatatttgaaaatttcaggctGT
TTTCTTGAGCCAAATTTgagttataactgaaaatgtgtGACGGGCGGGac
ataattttgttgttttcaaagGTGAATTCGGCACAACATGCTTATTTATT
CAAGAACTGTATGTTCTGAGaaagtatttttgtattttgagtaTTCTCCT
ATCAAGATGTGACCAAATAGTGGAGAAAACTGTAAAGATTTTGATTAGTT
TTTCCTCTAAGAAGCTTTGAAcactaaattttgctttgaaaacaacaaaa
ttgtGTCCTGTCCGTCACCACTTCTATGGTACTTTGAATACAGTTTGCCT
TGTTTACGAAACCACAGTACAGATCTGTACAGATTTGGCGCAATTCACCC
ATATCTGGTCAAATTTACTAAACTTTGCCAATTTAAAACACGTGAAAATA
TCATATGATGTATGACCACAGCTCCCGTTCACTCCTCTAGCGCGGTCTGA
AAATGAGCCCGGTGACTGTATAAACTTTTGCTTATCGCTAGTGAGCTGGa
gatgatagctaaaaacaaattttagcactagaaagctgaaaaccttagct
ttcagatggtgtatgctgCTTACAAAAATCTGCAATCTTACGTTGAAAAA
TCACAAtttattctatttttagaaattccagacggcctgtagattttcaa
ataaagcagcatgtgatagattgtagcctactCTTACCCTGGGTATACTA
AAAAAACCGTtcttgaaaagatgaaccagctcattAGCGACTGCCATTTG
TTTCCATGTGGGTCAAGAATCTTCCGGTGCTGTACGTAAGTCAGCGCTAA
GTCGTGTTTTTACCTTGATGTCGAAAAACATCAATatctttgaaaagaaa
agagataTTTAGATgcagttttttatttgtttccctgataatttcTTATT
GATTTAAACATAGTCTGTATAAAAAACCCCAggggaagccttttgtttct
ttccattgtttcttacttgaaattgcattgagaaattagtttgttttgct
cacttattgatcatgtgattaaatcttaaaccaatcccaagaggaataCT
TGGTAAtatgatcaaaaactgagcaaatcgattttcaccttttgataata
acaaaggaaaaatccgacaaaaagttaaaacaatatgcttccagaccagg
gttttttataaggactatgatttttaaaaaaagaaagaaaagatttaatG
ATTTAAAAGTAAGTACTACagattgaagttcattttgctGAATTCTTCCT
TGCTCTGCACCAAAAATCCTAACGAGTGCACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050588-exon-scaffold_179-1491911889:394929..396611 | TCONS_00050588-exon-scaffold_179-1491911889:394929..396611 | Clytia hemisphaerica | exon |
| TCONS_00050588-exon-scaffold_179-1510915933:394929..396611 | TCONS_00050588-exon-scaffold_179-1510915933:394929..396611 | Clytia hemisphaerica | exon |
| TCONS_00050588-exon-scaffold_179-1575043694:394929..396611 | TCONS_00050588-exon-scaffold_179-1575043694:394929..396611 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:394929..396611 . |
Blast
The following BLAST results are available for this feature:
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