TCONS_00050597 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050597
Unique NameTCONS_00050597
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050597 ID=TCONS_00050597|Name=TCONS_00050597|organism=Clytia hemisphaerica|type=transcript|length=256bp
tgtaaacagttcttcttacagcagcatatccataccactgtaaaaaatgc
agcTATGTCCATCCATCACGAAACAAACTGGTACATGAAAAATACGTTTA
ACTGTACCCAAATCATAGCATGTACGAGGACTTTCAAAAAGGGTGCAGAG
CAGATATGTAGCTTCAGAGTCGAACCATGCCAGAAGCACAAGAAGACAAA
GTCCCTTGATCGATGGtttgatcttaattttcaatgatagtCACAGGATT
TTAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_179:561638..561893

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050597 ID=TCONS_00050597|Name=TCONS_00050597|organism=Clytia hemisphaerica|type=transcript|length=256bp|location=Sequence derived from alignment at scaffold_179:561638..561893 (Clytia hemisphaerica)
ATTTAAAATCCTGTGactatcattgaaaattaagatcaaaCCATCGATCA
AGGGACTTTGTCTTCTTGTGCTTCTGGCATGGTTCGACTCTGAAGCTACA
TATCTGCTCTGCACCCTTTTTGAAAGTCCTCGTACATGCTATGATTTGGG
TACAGTTAAACGTATTTTTCATGTACCAGTTTGTTTCGTGATGGATGGAC
ATAgctgcattttttacagtggtatggatatgctgctgtaagaagaactg
tttaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032051XLOC_032051Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050597-exon-scaffold_179-1491911889:561638..561893TCONS_00050597-exon-scaffold_179-1491911889:561638..561893Clytia hemisphaericaexon
TCONS_00050597-exon-scaffold_179-1510915933:561638..561893TCONS_00050597-exon-scaffold_179-1510915933:561638..561893Clytia hemisphaericaexon
TCONS_00050597-exon-scaffold_179-1575043694:561638..561893TCONS_00050597-exon-scaffold_179-1575043694:561638..561893Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:561638..561893 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.22056	0.0574195	4.61543	9.6034	2.75064	0.988134	3.05197	0	6.6902	7.98235	5.60855	7.55513	13.3801	29.0996	4.36467	3.54919	4.88255	2.72264	2.76626	4.95392	19.3167	4.49986	0	11.3148	3.78991	1.63413	0	26.4007	11.9102	10.2812
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050597 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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