|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050598 ID=TCONS_00050598|Name=TCONS_00050598|organism=Clytia hemisphaerica|type=transcript|length=2192bp
gctctagattgcttgaaatgcactcaaaacaaaacgttttcaagaaaaaa
caagaaaaactttgcattttgcaaaataaccaattttgaaaaaattattg
ctACGGCACTGTTTTGTATGTCATCTAAACGCATGCCTTGCTCAAAGGCA
cgacttttttgaaagattcaaGAATGTACTTAAAAGCATCAAGAAAAATC
TAGCTAGGTCAAGTCGTGAAAGGGTAAagaaataattacaaaaaatgcGG
GAAATTTACGCAAATTTGACGATTTGATATATTGAGGTTTAACACCTTGC
ataaaagaaaacatgaaaTCTCCAAACTATATCGGAGCACACCATAGCGA
TGTTACGAAATGTACCTCAAAGTTGCTATGGCAAGTCTTCATGAGAACAA
AGGACATATTCGTGACGTATCTATGTCTCAAAGCAATTTAGTTATGAAAA
CATGATAGAGAAGGTCGCCTGATTTTAGTTAACAGTTGAGTTATTATTGA
TGTGGACAGGACGATCAAAAAAGTGTAGAAAATAGAATTTTGAGCGAATT
CTTCAAACACCATACTAACGACATATGAGAATTAAAAAACAAGTAATTTC
TGGTTGAATTAGTCAGATGTTGACATATCTATTGATAGAGAAAACAGAGA
GGACATGATATAGAAGTTTACGAAAGGATATTTTAAGACGATTTGTGGAA
ACTTTGTAAATGCAAACccacatgtttttcttttaatctGATACAGTAAC
CATCAAGAAATAGTCCATTGGATATCATTACTGAGAGAACATTCAAGCTA
CATGCACCGACAcatcttttgttttgatcagATACAGAACCATCAAGAAA
TAGTTCATTGGATATCATTACTGGGAGAACATTCAAGCTACATGCACCGA
TCTTTGGTAGGTCTTAACACTGCTCTGGCACGTAAAGAGTCAGATAATAA
TACAACTACAACAACAAAAATGTCTCTGGATCACAGATTTGTGTTTGCTG
ACAATTTGGTGCTGCGATGCAAATGTGAGAAAGATGAATACTTCCCGATT
GAGATTTTGGATTTCGAAGATGTTCTTGGAAGATTGAAAAGTTTGCTTTC
ATCGAGGACCGAACCCAGGAGAAATTCGGGCAACAGTCCAAGACGTGAAC
TGTCTTTGAAGAACCGATTCTTCGATTCCGGCAAAACGAGTGGTAGTAGT
GATGACGAGAGCTgtgaaaaatcaacaaaatttggCAGCTCTTCACAAGA
GTTTTTGAATACGAAACAAAACTCGGTTTTTCTTCAGTATTCTCCCCTCA
TGAAACATCGACGACGTATCAATAAAGATCAAGCTATCAatgcaaacaaa
caaaaactcaTTAACTCAAAAAAAAACTGTAGCGATCCGATAGACTGCTT
AAATGAGAGTTCACCTGACTTCGTTCATGTTTCAACATTCAGAGACTTAT
CAAGCGCTGAAGAATTTCTTCGATATTTACGAGACAGTCGAGAAATAAAA
ACGATTGCTATCGATATTTATATCACATTAGATTTGACGATTTCAGTGAC
TTATCAACGGTTGATTGACTTCAAGCAAGATTTCATGATGCTGGACCTGA
AGTCCTCTGATTTCATGCTTTTCTTGAAACCATTCTAACGTTAGTTTATC
TTAGGATTTTCTATTCTAGTTTTAGCCGTGTGTAATATGTATTTGAACtg
taaattttctgtaaataatATATGCCATCTTCCCTTAATTGAAGTAAAAC
TTTGTTttaaccttttcagcccggcagacgtgtatacacgtcgagcatac
gttccggcagacgtgtatacacgtctttttgacattgtgatcttctaagc
tatatttctcccattggcttctttgctagccgtagaagtaaagaaaaacg
gaaagtagaggttctaagctttcttttgatatatggtgatgtaatgtttt
gatcacgtggtGAGGCAGCAGATTTCgtagaaaaagtagaaaaaaacact
gaatcaagatggcgaccaagaaatgggtttttcaaacttactgcTAAAGC
TCTTGgattttttgactggtttaggccacttttcttcatggaaacattgt
ttttataattgcaaaacatccaGTTGGAGCATGGAAAGTTGACAAATCCA
AtgcaaaagtgttttctgcACCTCATATATTTCAAAGGAGNN Run BLAST on NCBI protein sequence of TCONS_00050598-protein >TCONS_00050598-protein ID=TCONS_00050598-protein|Name=TCONS_00050598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
MHRHIFCFDQIQNHQEIVHWISLLGEHSSYMHRSLVGLNTALARKESDNN
TTTTTKMSLDHRFVFADNLVLRCKCEKDEYFPIEILDFEDVLGRLKSLLS
SRTEPRRNSGNSPRRELSLKNRFFDSGKTSGSSDDESCEKSTKFGSSSQE
FLNTKQNSVFLQYSPLMKHRRRINKDQAINANKQKLINSKKNCSDPIDCL
NESSPDFVHVSTFRDLSSAEEFLRYLRDSREIKTIAIDIYITLDLTISVT
YQRLIDFKQDFMMLDLKSSDFMLFLKPF Run BLAST on NCBI transcript from alignment at scaffold_18:73087..76374+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050598 ID=TCONS_00050598|Name=TCONS_00050598|organism=Clytia hemisphaerica|type=transcript|length=3288bp|location=Sequence derived from alignment at scaffold_18:73087..76374+ (Clytia hemisphaerica)
gctctagattgcttgaaatgcactcaaaacaaaacgttttcaagaaaaaa
caagaaaaactttgcattttgcaaaataaccaattttgaaaaaattattg
ctACGGCACTGTTTTGTATGTCATCTAAACGCATGCCTTGCTCAAAGGCA
cgacttttttgaaagattcaaGAATGTACTTAAAAGCATCAAGAAAAATC
TAGCTAGGTCAAGTCGTGAAAGGGTAAagaaataattacaaaaaatgcGG
GAAATTTACGCAAATTTGACGATTTGATATATTGAGGTTTAACACCTTGC
ataaaagaaaacatgaaaTCTCCAAACTATATCGGAGCACACCATAGCGA
TGTTACGAAATGTACCTCAAAGTTGCTATGGCAAGTCTTCATGAGAACAA
AGGACATATTCGTGACGTATCTATGTCTCAAAGCAATTTAGTTATGAAAA
CATGATAGAGAAGGTCGCCTGATTTTAGTTAACAGTTGAGTTATTATTGA
TGTGGACAGGACGATCAAAAAAGTGTAGAAAATAGAATTTTGAGCGAATT
CTTCAAACACCATACTAACGACATATGAGAATTAAAAAACAAGTAATTTC
TGGTTGAATTAGTCAGATGTTGACATATCTATTGATAGAGAAAACAGAGA
GGACATGATATAGAAGTTTACGAAAGGATATTTTAAGACGATTTGTGGAA
ACTTTGTAAATGCAAACccacatgtttttcttttaatctGATACAGTAAC
CATCAAGAAATAGTCCATTGGATATCATTACTGAGAGAACATTCAAGCTA
CATGCACCGACAcatcttttgttttgatcagATACAGAACCATCAAGAAA
TAGTTCATTGGATATCATTACTGGGAGAACATTCAAGCTACATGCACCGA
TCTTTGGTAGGTCTTAACACTGCTCTGGCACGTAAAGAGTCAGATAATAA
TACAACTACAACAACAAAAATGTCTCTGGATCACAGATTTGTGTTTGCTG
ACAATTTGGTGCTGCGATGCAAATGTGAGAAAGATGAATACTTCCCGATT
GAGATTTTGGATTTCGAAGATGTTCTTGGAAGATTGAAAAGTTTGCTTTC
ATCGAGGACCGAACCCAGGAGAAATTCGGTAAGTTCTGTTCAACTTTTGT
TCGGTCTGACTAAAGAGGtcaagaaatgaagaaagagaTAGAGACTGAAA
TCTCGTGGCCAGAAGGAATTCATAAATTTTAAATGGTTGTTTGATACACC
ATCACATGTCTTTATctcttaaaaactttttattggGAAATGCATTAGAT
GCATACCTCAGAAGACGTTTAAAATAACAAAACCATGATtgtttgtaaaa
ttttgttttgaataaacaTCGAAGTAGGTCATGGTTcatatttgaataaa
aatacctttttaaTTGCATTAATCTGTAACAAAGTGTCATAACAAATAAA
GAAGCTTAGTAGTTATGGTTAAATATGAAAACAGTTTTCTAAAAGGTATC
TAAGTTTAGTAACCATGGATTTGTGTCATTTAAGAGGTCAAtgttaaaat
agaaaaatgacatcaacaaaattttggcgaaacCAAATCTCCCCTCTGAC
ACTCCTCTCCTTTCCTCTACCAATACCACTGTAGTATACTCAAGTTTTCA
AACATGAATTGAGTGCGATACATAATTGCGATACAAGTCAATACATGAAG
CAGTTGAGTCAATTTTACaccaaaaaaatggtaaaaatatctgaaagaaa
atgatatttttaaattcattttgtaACGTAAAGTGCTTTCAATTCTCACA
TGTAGCATCCTCTTGGAAATAAATGATTGCCAAACCATAAATCATCATAA
GGTGACATATTTTGGCGTTGTAGACTGTAAATAGATATTATCTGCCTCGG
GACGTTAGACGTAATAAAAATGATGATGCGCATTTCTGACGCAcgtaaga
gagagagagagggagAGAAGGTAATGACATGTAACCCTTTAATTCAAGTT
GAAGTCTATAAATATCTCCATTTTTNGGGAAGGGGACATGTAACCCTTTA
ATTTAAGTTGAAGTCTATAAATATCTCCTCTTTCTGTTTTCAGGGCAACA
GTCCAAGACGTGAACTGTCTTTGAAGAACCGATTCTTCGATTCCGGCAAA
ACGAGTGGTAGTAGTGATGACGAGAGCTgtgaaaaatcaacaaaatttgg
CAGCTCTTCACAAGAGTTTTTGAATACGAAACAAAACTCGGTTTTTCTTC
AGTATTCTCCCCTCATGAAACATCGACGACGTATCAATAAAGATCAAGCT
ATCAatgcaaacaaacaaaaactcaTTAACTCAAAAAAAAACTGTAGCGA
TCCGATAGACTGCTTAAATGAGAGTTCACCTGACTTCGTTCATGTTTCAA
CATTCAGAGACTTATCAAGCGCTGAAGAATTTCTTCGATATTTACGAGAC
AGTCGAGAAATAAAAACGATTGCTATCGATATTTATATCACATTAGATTT
GACGATTTCAGTGACTTATCAACGGTTGATTGACTTCAAGCAAGATTTCA
TGATGCTGGACCTGAAGTCCTCTGATTTCATGCTTTTCTTGAAACCATTC
TAACGTTAGTTTATCTTAGGATTTTCTATTCTAGTTTTAGCCGTGTGTAA
TATGTATTTGAACtgtaaattttctgtaaataatATATGCCATCTTCCCT
TAATTGAAGTAAAACTTTGTTttaaccttttcagcccggcagacgtgtat
acacgtcgagcatacgttccggcagacgtgtatacacgtctttttgacat
tgtgatcttctaagctatatttctcccattggcttctttgctagccgtag
aagtaaagaaaaacggaaagtagaggttctaagctttcttttgatatatg
gtgatgtaatgttttgatcacgtggtGAGGCAGCAGATTTCgtagaaaaa
gtagaaaaaaacactgaatcaagatggcgaccaagaaatgggtttttcaa
acttactgcTAAAGCTCTTGgattttttgactggtttaggccacttttct
tcatggaaacattgtttttataattgcaaaacatccagtaagtatatcct
atattttttgttttgtttttagcataaaaattctatttatttgtcatttt
gaccacttttctcGACAAACCATAGGCGGGTTGACCCAAACTTAcagtac
tttttactttttcttcagGTTGGAGCATGGAAAGTTGACAAATCCAAtgc
aaaagtgttttctgcACCTCATATATTTCAAAGGAGNN Coding sequence (CDS) from alignment at scaffold_18:73087..76374+ >TCONS_00050598 ID=TCONS_00050598|Name=TCONS_00050598|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at scaffold_18:73087..76374+ (Clytia hemisphaerica)
ATGCACCGACAcatcttttgttttgatcagATACAGAACCATCAAGAAAT
AGTTCATTGGATATCATTACTGGGAGAACATTCAAGCTACATGCACCGAT
CTTTGGTAGGTCTTAACACTGCTCTGGCACGTAAAGAGTCAGATAATAAT
ACAACTACAACAACAAAAATGTCTCTGGATCACAGATTTGTGTTTGCTGA
CAATTTGGTGCTGCGATGCAAATGTGAGAAAGATGAATACTTCCCGATTG
AGATTTTGGATTTCGAAGATGTTCTTGGAAGATTGAAAAGTTTGCTTTCA
TCGAGGACCGAACCCAGGAGAAATTCGGGCAACAGTCCAAGACGTGAACT
GTCTTTGAAGAACCGATTCTTCGATTCCGGCAAAACGAGTGGTAGTAGTG
ATGACGAGAGCTgtgaaaaatcaacaaaatttggCAGCTCTTCACAAGAG
TTTTTGAATACGAAACAAAACTCGGTTTTTCTTCAGTATTCTCCCCTCAT
GAAACATCGACGACGTATCAATAAAGATCAAGCTATCAatgcaaacaaac
aaaaactcaTTAACTCAAAAAAAAACTGTAGCGATCCGATAGACTGCTTA
AATGAGAGTTCACCTGACTTCGTTCATGTTTCAACATTCAGAGACTTATC
AAGCGCTGAAGAATTTCTTCGATATTTACGAGACAGTCGAGAAATAAAAA
CGATTGCTATCGATATTTATATCACATTAGATTTGACGATTTCAGTGACT
TATCAACGGTTGATTGACTTCAAGCAAGATTTCATGATGCTGGACCTGAA
GTCCTCTGATTTCATGCTTTTCTTGAAACCATTCTAAATGCACCGACAca
tcttttgttttgatcagATACAGAACCATCAAGAAATAGTTCATTGGATA
TCATTACTGGGAGAACATTCAAGCTACATGCACCGATCTTTGGTAGGTCT
TAACACTGCTCTGGCACGTAAAGAGTCAGATAATAATACAACTACAACAA
CAAAAATGTCTCTGGATCACAGATTTGTGTTTGCTGACAATTTGGTGCTG
CGATGCAAATGTGAGAAAGATGAATACTTCCCGATTGAGATTTTGGATTT
CGAAGATGTTCTTGGAAGATTGAAAAGTTTGCTTTCATCGAGGACCGAAC
CCAGGAGAAATTCGGGCAACAGTCCAAGACGTGAACTGTCTTTGAAGAAC
CGATTCTTCGATTCCGGCAAAACGAGTGGTAGTAGTGATGACGAGAGCTg
tgaaaaatcaacaaaatttggCAGCTCTTCACAAGAGTTTTTGAATACGA
AACAAAACTCGGTTTTTCTTCAGTATTCTCCCCTCATGAAACATCGACGA
CGTATCAATAAAGATCAAGCTATCAatgcaaacaaacaaaaactcaTTAA
CTCAAAAAAAAACTGTAGCGATCCGATAGACTGCTTAAATGAGAGTTCAC
CTGACTTCGTTCATGTTTCAACATTCAGAGACTTATCAAGCGCTGAAGAA
TTTCTTCGATATTTACGAGACAGTCGAGAAATAAAAACGATTGCTATCGA
TATTTATATCACATTAGATTTGACGATTTCAGTGACTTATCAACGGTTGA
TTGACTTCAAGCAAGATTTCATGATGCTGGACCTGAAGTCCTCTGATTTC
ATGCTTTTCTTGAAACCATTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050598-exon-scaffold_18-1491911889:73087..74214 | TCONS_00050598-exon-scaffold_18-1491911889:73087..74214 | Clytia hemisphaerica | exon |
| TCONS_00050598-exon-scaffold_18-1510915933:73087..74214 | TCONS_00050598-exon-scaffold_18-1510915933:73087..74214 | Clytia hemisphaerica | exon |
| TCONS_00050598-exon-scaffold_18-1575043694:73087..74214 | TCONS_00050598-exon-scaffold_18-1575043694:73087..74214 | Clytia hemisphaerica | exon |
| TCONS_00050598-exon-scaffold_18-1491911889:75180..76173 | TCONS_00050598-exon-scaffold_18-1491911889:75180..76173 | Clytia hemisphaerica | exon |
| TCONS_00050598-exon-scaffold_18-1510915933:75180..76173 | TCONS_00050598-exon-scaffold_18-1510915933:75180..76173 | Clytia hemisphaerica | exon |
| TCONS_00050598-exon-scaffold_18-1575043694:75180..76173 | TCONS_00050598-exon-scaffold_18-1575043694:75180..76173 | Clytia hemisphaerica | exon |
| TCONS_00050598-exon-scaffold_18-1491911889:76305..76374 | TCONS_00050598-exon-scaffold_18-1491911889:76305..76374 | Clytia hemisphaerica | exon |
| TCONS_00050598-exon-scaffold_18-1510915933:76305..76374 | TCONS_00050598-exon-scaffold_18-1510915933:76305..76374 | Clytia hemisphaerica | exon |
| TCONS_00050598-exon-scaffold_18-1575043694:76305..76374 | TCONS_00050598-exon-scaffold_18-1575043694:76305..76374 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:73087..76374 + |
Blast
The following BLAST results are available for this feature:
|
