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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050606 ID=TCONS_00050606|Name=TCONS_00050606|organism=Clytia hemisphaerica|type=transcript|length=4670bpRun BLAST on NCBI transcript from alignment at scaffold_18:208371..221886+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050606 ID=TCONS_00050606|Name=TCONS_00050606|organism=Clytia hemisphaerica|type=transcript|length=13516bp|location=Sequence derived from alignment at scaffold_18:208371..221886+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00050606 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 127.872 bits (320), Expect = 3.728e-29 Identity = 63/168 (37.50%), Postives = 93/168 (55.36%), Query Frame = 3
Query: 1347 YTEWANWGVCSKECXXXXXXXXXXCLM-------SSCPGSNIDVNDCNVEPCPVDGSWGQWTEWSDCTTTCDFGRRIRTRKCDSPVALYGGKECAGVNEDSVSGCNPQPCPIHGHWSAWGLIEQCKQPCSNSRNAIKRRFCDLPAPKYGGDYCVGNDTRYIPCSSTPC 1829
+++W+ W CS CG G +R R C C GS++++ +C +PCPVDGSW +W+ W +CT +C G + RTR C++P +GG+ C G N + CN +PCP+HG WSAW C + C + R C+ P P +GG YC G +T+ C+ C
Sbjct: 4532 FSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEG-NAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQT-RARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697 HSP 2 Score: 116.701 bits (291), Expect = 9.650e-26 Identity = 94/295 (31.86%), Postives = 132/295 (44.75%), Query Frame = 3
Query: 849 DGNLTEWTQWGNCDKSCGLGVSMRQRWCTNPPPLYGGYDCVGETMETLPCNDIPCPGFYLAKVGQ---SCADLCSEVGNDFACIRLLNTYDRIQPFFEAIDADDY-TQL---SDIDCTSHPQTDDYQKASDPSYEISANRCRGYKNLTLIDCHAVGGSQDRRLCKCVDKDS-----------ASYTEWANWGVCSKECXXXXXXXXXXC-------LMSSCPGSNIDVNDCNVEPCPVDGSWGQWTEWSDCTTTCDFGRRIRTRKCDSPVALYGGKECAGVNEDSVSGCNPQPCP 1658
DG+ +EW+ W C +SCG G R R C NP +GG C G +E + CN PCP Q +C++ C + A RL N P F D TQ+ ++ +C H + A+ S+ + C G C R C+ D S +++ W+ WG CS+ C GG+ +RYR C +C G + + CN + CPVDGSWG W WS C+ +C G + R R CD PV + GG+ C G + V+ CN Q CP
Sbjct: 4586 DGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRA--RLCNNPP---PAFGGSYCDGAETQMQVCNERNCPIH-----GKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPG-DTTQVTRCNVQACP 4869 HSP 3 Score: 115.546 bits (288), Expect = 2.006e-25 Identity = 61/172 (35.47%), Postives = 87/172 (50.58%), Query Frame = 3
Query: 1341 ASYTEWANWGVCSKECXXXXXXXXXXCLMSS-------CPGSNIDVNDCNVEPCPVDGSWGQWTEWSDCTTTCDFGRRIRTRKCDSPVALYGGKECAGVNEDSVSGCNPQPCPIHGHWSAWGLIEQCKQPCSNSRNAIKRRFCDLPAPKYGGDYCVGNDTRYIPCSSTPCKS 1835
S++EW+ W C++ CG G R R C S C G+ +++ CN+ PCPV G+W W W C+ +C G + R R C++P +GG C G E + CN + CPIHG W+ W C C + R C P P+YGG C G+D + C+S PC +
Sbjct: 4587 GSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGA-ETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQ-RTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPT 4756 HSP 4 Score: 112.849 bits (281), Expect = 1.224e-24 Identity = 64/170 (37.65%), Postives = 83/170 (48.82%), Query Frame = 3
Query: 1341 ASYTEWANWGVCSKECXXXXXXXXXXCLM-------SSCPGSNIDVNDCNVEPCPVDGSWGQWTEWSDCTTTCDFGRRIRTRKCDSPVALYGGKECAGVNEDSVSGCNPQPCPIHGHWSAWGLIEQCKQPCSNSRNAIKRRFCDLPAPKYGGDYCVGNDTRYIPCSSTPC 1829
+++ W WG CS+ CG G R R C S C G+ + CN CP+ G W W WS C+ +C G R RTR C PV YGG++C G + S CN PCP HG+WS W C + C N + R CD P P GG C G D++ C++ C
Sbjct: 4644 GAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQS-DFCNSDPCPTHGNWSPWSGWGTCSRTC-NGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 5 Score: 107.071 bits (266), Expect = 8.139e-23 Identity = 60/170 (35.29%), Postives = 82/170 (48.24%), Query Frame = 3
Query: 1341 ASYTEWANWGVCSKECXXXXXXXXXXCL-------MSSCPGSNIDVNDCNVEPCPVDGSWGQWTEWSDCTTTCDFGRRIRTRKCDSPVALYGGKECAGVNEDSVSGCNPQPCPIHGHWSAWGLIEQCKQPCSNSRNAIKRRFCDLPAPKYGGDYCVGNDTRYIPCSSTPC 1829
+ WA+W CS CGGG QR R C C GS++ + CN +PCP G+W W+ W C+ TC+ G+ R R CD+P GG+ C G + + CN CP+ G W +W QC C ++R CD P P GG C G+ T+ C+ C
Sbjct: 4701 GKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGG-PDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKT-RKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 6 Score: 91.2781 bits (225), Expect = 4.741e-18 Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 3
Query: 1485 VDGSWGQWTEWSDCTTTCDFGRRIRTRKCDSPVALYGGKECAGVNEDSVSGCNPQPCPIHGHWSAWGLIEQCKQPCSNSRNAIKRRFCDLPAPKYGGDYCVGNDTRYIPCSSTPC 1829
V G + QW+ W C+ TC G + R+R C+ P+ GGK C G + + + C +PCP+ G WS W L E+C + C N + R C+ P+ ++GG C GN I C+ PC
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLE-MRNCQNKPCPVDGSWSEWSLWEECTRSCGRG-NQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640 The following BLAST results are available for this feature:
BLAST of TCONS_00050606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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