TCONS_00050607 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050607
Unique NameTCONS_00050607
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050607 ID=TCONS_00050607|Name=TCONS_00050607|organism=Clytia hemisphaerica|type=transcript|length=508bp
AGAGGAGACACGCTCCTCTGTAACTTTTTCCCAAGAAAATCCCAAGAAAA
TTTGGTGTTCAGGAAATATATCAAACTTGAAAGAAAACCGTCAGGACGTA
CAAAATGTTGGAATTCGCGCCAATCGTCAAACTTAATATGCTCCTTGATC
AAAGATCTATTGACATGTCGAAGGTCGAGAATAATGCTTGCCAGAAGGAC
AAGTATCTCAGTAACTGATCCAGATTGATGAAGTCATTTATCGATGACGT
CACAAAAGCAGTGTTGTCGAAAGCAGAATGATTATTTGAACGAAAACTTT
CGGTCGGAGGGGATAGAAAAGACAATTTTGTAACCTTCTTTTATAATACG
CTCAGAATAAATTTATTAGCTTCTATCTGTTCCCAGAACAGATAATGTTT
CTTAAGCCTTCCTTTAACAGCCCCTGAATCTAATTCAGTGCTATCAAATG
CATCAAATgcatttcttaaaaatttttgttcaaaatcaaaagaaaaacac
ttaTATTT
Run BLAST on NCBI

transcript from alignment at scaffold_18:5861..6618-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050607 ID=TCONS_00050607|Name=TCONS_00050607|organism=Clytia hemisphaerica|type=transcript|length=758bp|location=Sequence derived from alignment at scaffold_18:5861..6618- (Clytia hemisphaerica)
AGAGGAGACACGCTCCTCTGTAACTTTGTAAGTATTTTCAAAAGTATCTA
GCTCTATTCCTAGCCAGGTCATTCTTTGTGTGGGCTCCCATTCCGATTTT
TCTTCATTTGCTAGTAGACTAGTATTATCTAACGTCATCCAGGTAAACAG
ATAATTTTACGCCTTGTGAATGCCATGTAGAAACGAGTGTTCTTAAAAGT
TTCGTTAAAAGGGCTGGGACGGTAGATAACCCAAATGGTAACACTGTAAG
TACAAAAAATCTTTGCTTCTTTTCCAGTTCCCAAGAAAATCCCAAGAAAA
TTTGGTGTTCAGGAAATATATCAAACTTGAAAGAAAACCGTCAGGACGTA
CAAAATGTTGGAATTCGCGCCAATCGTCAAACTTAATATGCTCCTTGATC
AAAGATCTATTGACATGTCGAAGGTCGAGAATAATGCTTGCCAGAAGGAC
AAGTATCTCAGTAACTGATCCAGATTGATGAAGTCATTTATCGATGACGT
CACAAAAGCAGTGTTGTCGAAAGCAGAATGATTATTTGAACGAAAACTTT
CGGTCGGAGGGGATAGAAAAGACAATTTTGTAACCTTCTTTTATAATACG
CTCAGAATAAATTTATTAGCTTCTATCTGTTCCCAGAACAGATAATGTTT
CTTAAGCCTTCCTTTAACAGCCCCTGAATCTAATTCAGTGCTATCAAATG
CATCAAATGCATTTCTTAAAAATTTTTGTTCAAAATCAAAAGAAAAACAC
TTATATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032055XLOC_032055Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050607-exon-scaffold_18-1575043694:6592..6618TCONS_00050607-exon-scaffold_18-1575043694:6592..6618Clytia hemisphaericaexon
TCONS_00050607-exon-scaffold_18-1575043694:5861..6341TCONS_00050607-exon-scaffold_18-1575043694:5861..6341Clytia hemisphaericaexon
TCONS_00050607-exon-scaffold_18-1510915933:6592..6618TCONS_00050607-exon-scaffold_18-1510915933:6592..6618Clytia hemisphaericaexon
TCONS_00050607-exon-scaffold_18-1510915933:5861..6341TCONS_00050607-exon-scaffold_18-1510915933:5861..6341Clytia hemisphaericaexon
TCONS_00050607-exon-scaffold_18-1491911889:6592..6618TCONS_00050607-exon-scaffold_18-1491911889:6592..6618Clytia hemisphaericaexon
TCONS_00050607-exon-scaffold_18-1491911889:5861..6341TCONS_00050607-exon-scaffold_18-1491911889:5861..6341Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:5861..6618 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0751415	0.457648	0	3.13814	5.02985	1.56277	1.4777	0	0	0	0	0.0890736	0.0912976	0	0	0	0	0.166146	0.163874	0.486729	1.36436	0.162699	0	0	0.179561
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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