TCONS_00050610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050610
Unique NameTCONS_00050610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050610 ID=TCONS_00050610|Name=TCONS_00050610|organism=Clytia hemisphaerica|type=transcript|length=638bp
ATAATAACATATTTTTCGAAACTTGGAAGCCGGAATATAACGCACACCAG
GAAACAAAGGGGAACTGTGATAGTGCTGGCGGAGCATGGAGCATATGGAG
TGATTGGAGTCTTTGTAGCTCATCATGTGGTAATGATGGAATACAAAAAA
GATATCGAAAGTGTTTCTCTGATCAATGTTTGATTGAATTCGATGTGGAT
ATCAAAACTTGTAATCGTCAAAGGTGCCCAGTACAAGCAGACTATTACAC
AACGCTTTGGAAATGTTATTACTGGCCTCCCGTTCATGGTCAATGGAGCA
ATTGGTCAACTGTAAACGAAACATTCCAAAACGACACGACGTGCCCAGGG
AAACTTTCGTTCGCAACACGACAGTGCGATTCTCCGACACCAGAGTATTG
CGGAATGTATTGTGGATCCAGTAGTATCAAGATTGATATATTTCCTGTGG
ATGGTGGTTGGTCTAGCTGGAGTGGTTTTTCTTCTTGCACACTAAGTTGT
GGAAGTGGTACGCAGTATCGAACACGAGCTTGTGATAATCCATCAAGTCA
GTATGGAGGAAAGTATTGTGAAGGCTATGAACGAGAAGTAAAATCATGCA
ATATCAATCCATGTTCTGCCAATTCTTGACACTCGTTG
Run BLAST on NCBI

transcript from alignment at scaffold_18:34818..40969-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050610 ID=TCONS_00050610|Name=TCONS_00050610|organism=Clytia hemisphaerica|type=transcript|length=6152bp|location=Sequence derived from alignment at scaffold_18:34818..40969- (Clytia hemisphaerica)
ATAATAACATATTTTTCGAAACTTGGAAGCCGGAATATAACGGTGAGTTA TTGGCAAGGCTATGGTTCAACAAACCTTTTTGTTAAGTTAATTTTTTGTT TTCATTACCATATTGCATCGAACATACACTCCTTTTTTAAACGCCCTCTC AAGCAAATAAGGCCGCTATTGAAAGAATTCTTTTTGGCTTTTTCGGTTAC TAAGATGGGCAAACTTCTCAGAAAGGAAAAATCTTTATCCGAAACTTCTT CATAAAGGAGAAGACAGAAACAGAGAATCTTCTTGATAAAAGCTTTATAG GTTTTGTTTTTAGATAAGAGTGCTATCGTTTGCTTACTCATCAATTTTAA TTCAGAAACGGACACGGATGGAAGACACTGTCCCGATATGAAATAATGTG TCTGAGATGAAACGGGAACATTTATGTAAAAACAAAACCTTTAAGCTTTA AGTGTGTAATAATCTAAATATTTTCATTTATCATTTTAGCACACCAGGAA ACAAAGGGGAACTGTGATAGTGGTAAGCTTTTTTTATTGTTTTATGTTTG CTTTTATAAAAGACCTTATGCAAAATCTTAATGCATTCTTACAGATTTTA AATTATTTTCATTTGTGTATGCAGTTGAAACCAAATTGGGTCAAACCGCG CCACCTATTAAAGAAACTATCTTTGTAAAAATTAAGCGAACGAAGTGACT ACAAATTGTTTGGATATTTTCCTTCTTTTTAGCCGAATATTGCTAATTTA GAGTGAAAAAACACAAATGAGCACCGAAATTAGCAATCACAGACACGCTT TTGCAGGGATAAATGACTAGCCTATACTAGACGTCACGGCTTTTTTTCTA CGCTGTAACGTCTAATCCACTTTGCGACCTTTTCGAATGTTTCACTTTAA ACGTTTGAAGCTNGAACTCCAGCGTGGTAGATTCTACCCCCCTGGGGCTA ATAGGGTTAAACGTTTGAAGCTCTTGCAGTATCAAAAAAAATCGAACTTG CGTCAAAACACTTGAAAGACTTCTAATCGTCAAAGTGGAACTCACTAAGA AACGGGATGAAAATCCCGGTTTTTGGTGAGGTGCTCGCTGGGAAATGACA TACTAGTAGTGGAGTTTACTATATCATTTCCCTGCTTTTTGGTGCCCCAA ATAAATCGACGCTTAGTTTGCTTGAAATAAACTACTTTGATCATTTGGTC AACTCGTTATTAAAAGACGTAGGTCAGTACTTAACTTCCAGGGCTACTAG AAGTATCTTATCCTAACAAGAATGGCTATTGTTTAAGTTTTGAAGCTCAA ATTCTTGATATCCCAGGGGCCGCGGCAGCGGGGGGGCCACCCGGGCCTGA TTACTTACTTACTGATTCAGCTAAATTCTGCGTAAAAACCTTGAAAAAGA CCTGTTTTAGGCAGTCTAGAAGGGCTAATTTTTGAAAATTTCTCCCGTCG GCGCCAACCATGGTGGCACCTTCTTAGACACTAAAGCATGGCCCTACCAC TTTCAAAGTGGAGCCGCGGCCCCTGTATCCGTAAGTCATTTTTCTAGCGG TAACACCCAAAAGAATCCGGGATTTGACCTCTCTCTGTTACTAAAAATAG AAACACGGAGGTCAAAATCCGGCTTTTTTCGAGGGCTTCCGTTAAAAAAT ATGACGTCATCTTGACTTACGCATATCAAAAATACAGTAGCGTAGACAAG AGGGGCGCAAAATTTGTGTAGGAGAGTAGATTTTATAACACTCTCATTAT CTATTCATAATGAAAAAAGATAATTACAGTGTCATAAAAATCTGCTCTCC AACACAAATTTTGCGCCCCTCCTGTCTACGCTACTGCAAATAGGCCCCTT GTGTATTTTTTCGCTATCTAATAAAATCATTTTTCGAAATGGTAAAAAAA GAAATATTTTTCGAAAATCTTTTTATTTATCATTATACTTTAGCTGGCGG AGCATGGAGCATATGGAGTGATTGGAGTCTTTGTAGCTCATCATGTGGTA ATGATGGAATACAAAAAAGATATCGAAAGTGTTTCTCTGATCAATGTTTG ATTGAATTCGATGTGGATATCAAAACTTGTAATCGTCAAAGGTGCCCAGG TAGCTAAAAGTAAATAAAATCTGACCCTTATAACATAGTACCCAGAGCCA CTGGTGGTACCATTTTTTCATGCCATTTCATACCATTTCACTGATGGGCG TTGGTACAATCCTGAGCTCTATCAGAATTATAAAAAAGTGAACGAAGGAA CTAGATTCGAGTTTGTCATTATACGACTTCCAGGTACCTTTCTTTTTATT ATACTGAGAAAAAGTTCTTTCCTAGTCCTATATTTTTAAACAGGTGTACT GATCTAATTGTTCTATCCCGAAATTATAAGAATTCTAGCTTTGTTGCCAC CGGAGGAGGCCTAAAGCTTCTGGGGATGGCATTCATAGCTTCACGCATAA GGAAGTTGGGGAAACATCTCATAATTTTGCGCGCGTCTTTCAGTATTTTA GTAAGGTAAGCAGTCTTATCTTACGGTCTCTCTATTGTTTTATCATCATC AAAAAGACTCTTGAAGACTTTTCCGGAGTTATTTTGATCTGATGACTCAT TTTGATATGTCAGTTTGTCTTTTTCTTATCCCTGGAGAGTTAAATGAATC TAAGGAAATTCCCTTTTCTGGGAAATTCCCTTTTTATACGACAAGTAGCT ATTAAGCGCTCTTCATAGGTTAAAAATATTACTCTACTCAAAGTATTCGA AAGTTGCTAAACGTGTACATTAGTAAAATAACATATGAAGAGCAGTATCT TCAGATATATATGCTTTTTTATAGGAAAAACCAGTAAGTCATATGATTCT GGCTGGGCTGCTCTTAAATTTATATGAGTTTTTCAGCCTTAAATGTCAAT ATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAT TTGTTCTTAGGTTTTGGCCAAATTTCAGCCTCGTATTCTTATGAAATTGT TCTTATAAAAAACGTGTAAGACAAGGCACGGATATCACTCTAAGTAGACT GTAAATCACTCCCTTGACACATTTGTTAGCATTTGAAAGAATTTTGTCTC AGATGAGAGATCAGTCTTAACAAAATTACTGTAGGGCTAAGATCATTCCT TTTGAACGCCAAACTCAACTCTATGTGTTCGTTTTGCTGCGGTGGCACCT TAATGAAAGTTATGGCTAGTATATTTACTAATCCATAGAGCATTATTTTT TATTTTCCTCGAAATAACTTTATATGATTTTCTAAACCTAAGGTTCTAGT GAAGATTTAAGTTTTGATAACTAAATAATTTCAATTTTCGATTTTTTCAT CCAGTACAAGCAGACTATTACACAACGCTTTGGAAATGTTATTACTGGCC TCCCGTTCATGGTCAATGGAGCAATTGGTCAACTGTAAACGAAACATTCC AAAACGACACGACGTGCCCAGGGAAACTTTCGTTCGCAACACGACAGTGC GATTCTCCGACACCAGAGTATTGCGGAATGTATTGTGGATCCAGTAGTAT CAAGATTGATATATTTCCTGGTATGCGACACAATTTTTCAAATAGATATA CTTTTGTAAATATGGAAATATGACTTTTTTATATTTCCAAAGTTGTGGAA ATATCATATATCATGATATTTCCATATCATGTTTCATGATATTTCCAATT CTGAAATTCATTGAAACATCATATTTTCAAAATATTTCCAATTTTTAAAT TTGAAATATTTTGAAAATATGATATTTCAGATTTGGAAATATCATGAAAT ATGGTATTTTCATAACTTAGAAATAAAGAAAAGTCATATTTCCATATTTA CAAAAGTATATGGAAATATAATATTTTCAAGATATTTCCAGGATTGGAAA CCTCTTATTTCGCCCAGTGGAGGGGGCATGGAAAAATTGGTTTTTAGAAT CACACCCTTACACTACAGTGCAGCAAAAAATTGGTAATATTCATACCCTT ACAGTGCATTTTCCTCGAATTTTCTACTCTTTTTGAGCAAAATAATCCGA ATTTTCGGGCAAAAATGTGCAACTGTTCCTGGATTTGCTGAAAATTCCAC CCTGCATCTAAAAAAAGTCAACCCTACAGTGCGGTTCTGTTATGTTTAAA ACATACCCTTAATCGCCGCACATACCGCCGCCGGTCAATTTGCCTGACTA CCCTCCCCATCCAGACCTTACATTCCTGTTCTATGACTTGTTTAAAAGGT TGTTATAACAGTTATTTAACAATTATTTCAACGGAGCTGTGAAAAAGAAC AATGACTTGATGTATTTCGCAAAAAAAAAGCTTAGACATCATTCAATCTT CTCTAAATTAGATGTATAAAGCATCAAAAAGTATCTTATCTTCCTACCGG TCTATAAAGCAAATATGAACCTATCTCTGGAACTCAGGAAATATTGGACC TTCTGAATTGAAAGTTTTACCAATGATAATTGACCACCTAAGTCGCTGTG AGAAATTTCAGAGGCCCCTTAGATGCATGGAGGGTATTTGCAATTTATCT CTTTGTTCTAGTGGATGGTGGTTGGTCTAGCTGGAGTGGTTTTTCTTCTT GCACACTAAGTTGTGGAAGTGGTACGCAGTATCGAACACGAGCTTGTGAT AATCCATCAAGTCAGTATGGAGGAAAGTATTGTGAAGGCTATGAACGAGA AGTAAAATCATGCAATATCAATCCATGTTCTGGTAAGAGTAATCAATGCC ATTGGGAAATTAGCGGGTTTATCTTCTTACCCAGCTGGCACACAACGTTG TTTTGACGTTCATCTAACGTTATATGGACGTTGTGAATATTAGAAAAACG TTAAAACGACGTTGTGTTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC CCCCCCCCCCCCCCCAGGCAAGCATCAGTTGATCCCTCTGGACAACCCAA ATTACCCCCGGACAGAGCAAATTCACCCCCCAGACAAGGTAAATTTCGAT GTTTTTTCGCTACCCCCCGGACACTATATCCTCCTGCCCCCATGTATGAA CATTTTCTGGAATAGCCCAATAAGAATTTGTCCCATCCTTATTTTGTAAA CAAAAACTTCGGTTCCCTGTAAATTATTTCAGCCAATTCTTGACACTCGT TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032056XLOC_032056Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050610-exon-scaffold_18-1575043694:40928..40969TCONS_00050610-exon-scaffold_18-1575043694:40928..40969Clytia hemisphaericaexon
TCONS_00050610-exon-scaffold_18-1575043694:40448..40480TCONS_00050610-exon-scaffold_18-1575043694:40448..40480Clytia hemisphaericaexon
TCONS_00050610-exon-scaffold_18-1575043694:38871..39026TCONS_00050610-exon-scaffold_18-1575043694:38871..39026Clytia hemisphaericaexon
TCONS_00050610-exon-scaffold_18-1575043694:37250..37465TCONS_00050610-exon-scaffold_18-1575043694:37250..37465Clytia hemisphaericaexon
TCONS_00050610-exon-scaffold_18-1575043694:36088..36258TCONS_00050610-exon-scaffold_18-1575043694:36088..36258Clytia hemisphaericaexon
TCONS_00050610-exon-scaffold_18-1575043694:34818..34837TCONS_00050610-exon-scaffold_18-1575043694:34818..34837Clytia hemisphaericaexon
TCONS_00050610-exon-scaffold_18-1510915933:40928..40969TCONS_00050610-exon-scaffold_18-1510915933:40928..40969Clytia hemisphaericaexon
TCONS_00050610-exon-scaffold_18-1510915933:40448..40480TCONS_00050610-exon-scaffold_18-1510915933:40448..40480Clytia hemisphaericaexon
TCONS_00050610-exon-scaffold_18-1510915933:38871..39026TCONS_00050610-exon-scaffold_18-1510915933:38871..39026Clytia hemisphaericaexon
TCONS_00050610-exon-scaffold_18-1510915933:37250..37465TCONS_00050610-exon-scaffold_18-1510915933:37250..37465Clytia hemisphaericaexon
TCONS_00050610-exon-scaffold_18-1510915933:36088..36258TCONS_00050610-exon-scaffold_18-1510915933:36088..36258Clytia hemisphaericaexon
TCONS_00050610-exon-scaffold_18-1510915933:34818..34837TCONS_00050610-exon-scaffold_18-1510915933:34818..34837Clytia hemisphaericaexon
TCONS_00050610-exon-scaffold_18-1491911889:40928..40969TCONS_00050610-exon-scaffold_18-1491911889:40928..40969Clytia hemisphaericaexon
TCONS_00050610-exon-scaffold_18-1491911889:40448..40480TCONS_00050610-exon-scaffold_18-1491911889:40448..40480Clytia hemisphaericaexon
TCONS_00050610-exon-scaffold_18-1491911889:38871..39026TCONS_00050610-exon-scaffold_18-1491911889:38871..39026Clytia hemisphaericaexon
TCONS_00050610-exon-scaffold_18-1491911889:37250..37465TCONS_00050610-exon-scaffold_18-1491911889:37250..37465Clytia hemisphaericaexon
TCONS_00050610-exon-scaffold_18-1491911889:36088..36258TCONS_00050610-exon-scaffold_18-1491911889:36088..36258Clytia hemisphaericaexon
TCONS_00050610-exon-scaffold_18-1491911889:34818..34837TCONS_00050610-exon-scaffold_18-1491911889:34818..34837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:34818..40969 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 4.4448 0 0 0.194204 0 0 0 1.09489 0.234539 0 0.288614 0.998206 6.73502 0 0 0 1.06848 0 1.16201 0 0 0 0.000212634 2.17138 0 0.00137099 0.130503 0 0.0389431
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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