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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050610 ID=TCONS_00050610|Name=TCONS_00050610|organism=Clytia hemisphaerica|type=transcript|length=638bp ATAATAACATATTTTTCGAAACTTGGAAGCCGGAATATAACGCACACCAG GAAACAAAGGGGAACTGTGATAGTGCTGGCGGAGCATGGAGCATATGGAG TGATTGGAGTCTTTGTAGCTCATCATGTGGTAATGATGGAATACAAAAAA GATATCGAAAGTGTTTCTCTGATCAATGTTTGATTGAATTCGATGTGGAT ATCAAAACTTGTAATCGTCAAAGGTGCCCAGTACAAGCAGACTATTACAC AACGCTTTGGAAATGTTATTACTGGCCTCCCGTTCATGGTCAATGGAGCA ATTGGTCAACTGTAAACGAAACATTCCAAAACGACACGACGTGCCCAGGG AAACTTTCGTTCGCAACACGACAGTGCGATTCTCCGACACCAGAGTATTG CGGAATGTATTGTGGATCCAGTAGTATCAAGATTGATATATTTCCTGTGG ATGGTGGTTGGTCTAGCTGGAGTGGTTTTTCTTCTTGCACACTAAGTTGT GGAAGTGGTACGCAGTATCGAACACGAGCTTGTGATAATCCATCAAGTCA GTATGGAGGAAAGTATTGTGAAGGCTATGAACGAGAAGTAAAATCATGCA ATATCAATCCATGTTCTGCCAATTCTTGACACTCGTTG Run BLAST on NCBI transcript from alignment at scaffold_18:34818..40969- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050610 ID=TCONS_00050610|Name=TCONS_00050610|organism=Clytia hemisphaerica|type=transcript|length=6152bp|location=Sequence derived from alignment at scaffold_18:34818..40969- (Clytia hemisphaerica) ATAATAACATATTTTTCGAAACTTGGAAGCCGGAATATAACGGTGAGTTA
TTGGCAAGGCTATGGTTCAACAAACCTTTTTGTTAAGTTAATTTTTTGTT
TTCATTACCATATTGCATCGAACATACACTCCTTTTTTAAACGCCCTCTC
AAGCAAATAAGGCCGCTATTGAAAGAATTCTTTTTGGCTTTTTCGGTTAC
TAAGATGGGCAAACTTCTCAGAAAGGAAAAATCTTTATCCGAAACTTCTT
CATAAAGGAGAAGACAGAAACAGAGAATCTTCTTGATAAAAGCTTTATAG
GTTTTGTTTTTAGATAAGAGTGCTATCGTTTGCTTACTCATCAATTTTAA
TTCAGAAACGGACACGGATGGAAGACACTGTCCCGATATGAAATAATGTG
TCTGAGATGAAACGGGAACATTTATGTAAAAACAAAACCTTTAAGCTTTA
AGTGTGTAATAATCTAAATATTTTCATTTATCATTTTAGCACACCAGGAA
ACAAAGGGGAACTGTGATAGTGGTAAGCTTTTTTTATTGTTTTATGTTTG
CTTTTATAAAAGACCTTATGCAAAATCTTAATGCATTCTTACAGATTTTA
AATTATTTTCATTTGTGTATGCAGTTGAAACCAAATTGGGTCAAACCGCG
CCACCTATTAAAGAAACTATCTTTGTAAAAATTAAGCGAACGAAGTGACT
ACAAATTGTTTGGATATTTTCCTTCTTTTTAGCCGAATATTGCTAATTTA
GAGTGAAAAAACACAAATGAGCACCGAAATTAGCAATCACAGACACGCTT
TTGCAGGGATAAATGACTAGCCTATACTAGACGTCACGGCTTTTTTTCTA
CGCTGTAACGTCTAATCCACTTTGCGACCTTTTCGAATGTTTCACTTTAA
ACGTTTGAAGCTNGAACTCCAGCGTGGTAGATTCTACCCCCCTGGGGCTA
ATAGGGTTAAACGTTTGAAGCTCTTGCAGTATCAAAAAAAATCGAACTTG
CGTCAAAACACTTGAAAGACTTCTAATCGTCAAAGTGGAACTCACTAAGA
AACGGGATGAAAATCCCGGTTTTTGGTGAGGTGCTCGCTGGGAAATGACA
TACTAGTAGTGGAGTTTACTATATCATTTCCCTGCTTTTTGGTGCCCCAA
ATAAATCGACGCTTAGTTTGCTTGAAATAAACTACTTTGATCATTTGGTC
AACTCGTTATTAAAAGACGTAGGTCAGTACTTAACTTCCAGGGCTACTAG
AAGTATCTTATCCTAACAAGAATGGCTATTGTTTAAGTTTTGAAGCTCAA
ATTCTTGATATCCCAGGGGCCGCGGCAGCGGGGGGGCCACCCGGGCCTGA
TTACTTACTTACTGATTCAGCTAAATTCTGCGTAAAAACCTTGAAAAAGA
CCTGTTTTAGGCAGTCTAGAAGGGCTAATTTTTGAAAATTTCTCCCGTCG
GCGCCAACCATGGTGGCACCTTCTTAGACACTAAAGCATGGCCCTACCAC
TTTCAAAGTGGAGCCGCGGCCCCTGTATCCGTAAGTCATTTTTCTAGCGG
TAACACCCAAAAGAATCCGGGATTTGACCTCTCTCTGTTACTAAAAATAG
AAACACGGAGGTCAAAATCCGGCTTTTTTCGAGGGCTTCCGTTAAAAAAT
ATGACGTCATCTTGACTTACGCATATCAAAAATACAGTAGCGTAGACAAG
AGGGGCGCAAAATTTGTGTAGGAGAGTAGATTTTATAACACTCTCATTAT
CTATTCATAATGAAAAAAGATAATTACAGTGTCATAAAAATCTGCTCTCC
AACACAAATTTTGCGCCCCTCCTGTCTACGCTACTGCAAATAGGCCCCTT
GTGTATTTTTTCGCTATCTAATAAAATCATTTTTCGAAATGGTAAAAAAA
GAAATATTTTTCGAAAATCTTTTTATTTATCATTATACTTTAGCTGGCGG
AGCATGGAGCATATGGAGTGATTGGAGTCTTTGTAGCTCATCATGTGGTA
ATGATGGAATACAAAAAAGATATCGAAAGTGTTTCTCTGATCAATGTTTG
ATTGAATTCGATGTGGATATCAAAACTTGTAATCGTCAAAGGTGCCCAGG
TAGCTAAAAGTAAATAAAATCTGACCCTTATAACATAGTACCCAGAGCCA
CTGGTGGTACCATTTTTTCATGCCATTTCATACCATTTCACTGATGGGCG
TTGGTACAATCCTGAGCTCTATCAGAATTATAAAAAAGTGAACGAAGGAA
CTAGATTCGAGTTTGTCATTATACGACTTCCAGGTACCTTTCTTTTTATT
ATACTGAGAAAAAGTTCTTTCCTAGTCCTATATTTTTAAACAGGTGTACT
GATCTAATTGTTCTATCCCGAAATTATAAGAATTCTAGCTTTGTTGCCAC
CGGAGGAGGCCTAAAGCTTCTGGGGATGGCATTCATAGCTTCACGCATAA
GGAAGTTGGGGAAACATCTCATAATTTTGCGCGCGTCTTTCAGTATTTTA
GTAAGGTAAGCAGTCTTATCTTACGGTCTCTCTATTGTTTTATCATCATC
AAAAAGACTCTTGAAGACTTTTCCGGAGTTATTTTGATCTGATGACTCAT
TTTGATATGTCAGTTTGTCTTTTTCTTATCCCTGGAGAGTTAAATGAATC
TAAGGAAATTCCCTTTTCTGGGAAATTCCCTTTTTATACGACAAGTAGCT
ATTAAGCGCTCTTCATAGGTTAAAAATATTACTCTACTCAAAGTATTCGA
AAGTTGCTAAACGTGTACATTAGTAAAATAACATATGAAGAGCAGTATCT
TCAGATATATATGCTTTTTTATAGGAAAAACCAGTAAGTCATATGATTCT
GGCTGGGCTGCTCTTAAATTTATATGAGTTTTTCAGCCTTAAATGTCAAT
ATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAT
TTGTTCTTAGGTTTTGGCCAAATTTCAGCCTCGTATTCTTATGAAATTGT
TCTTATAAAAAACGTGTAAGACAAGGCACGGATATCACTCTAAGTAGACT
GTAAATCACTCCCTTGACACATTTGTTAGCATTTGAAAGAATTTTGTCTC
AGATGAGAGATCAGTCTTAACAAAATTACTGTAGGGCTAAGATCATTCCT
TTTGAACGCCAAACTCAACTCTATGTGTTCGTTTTGCTGCGGTGGCACCT
TAATGAAAGTTATGGCTAGTATATTTACTAATCCATAGAGCATTATTTTT
TATTTTCCTCGAAATAACTTTATATGATTTTCTAAACCTAAGGTTCTAGT
GAAGATTTAAGTTTTGATAACTAAATAATTTCAATTTTCGATTTTTTCAT
CCAGTACAAGCAGACTATTACACAACGCTTTGGAAATGTTATTACTGGCC
TCCCGTTCATGGTCAATGGAGCAATTGGTCAACTGTAAACGAAACATTCC
AAAACGACACGACGTGCCCAGGGAAACTTTCGTTCGCAACACGACAGTGC
GATTCTCCGACACCAGAGTATTGCGGAATGTATTGTGGATCCAGTAGTAT
CAAGATTGATATATTTCCTGGTATGCGACACAATTTTTCAAATAGATATA
CTTTTGTAAATATGGAAATATGACTTTTTTATATTTCCAAAGTTGTGGAA
ATATCATATATCATGATATTTCCATATCATGTTTCATGATATTTCCAATT
CTGAAATTCATTGAAACATCATATTTTCAAAATATTTCCAATTTTTAAAT
TTGAAATATTTTGAAAATATGATATTTCAGATTTGGAAATATCATGAAAT
ATGGTATTTTCATAACTTAGAAATAAAGAAAAGTCATATTTCCATATTTA
CAAAAGTATATGGAAATATAATATTTTCAAGATATTTCCAGGATTGGAAA
CCTCTTATTTCGCCCAGTGGAGGGGGCATGGAAAAATTGGTTTTTAGAAT
CACACCCTTACACTACAGTGCAGCAAAAAATTGGTAATATTCATACCCTT
ACAGTGCATTTTCCTCGAATTTTCTACTCTTTTTGAGCAAAATAATCCGA
ATTTTCGGGCAAAAATGTGCAACTGTTCCTGGATTTGCTGAAAATTCCAC
CCTGCATCTAAAAAAAGTCAACCCTACAGTGCGGTTCTGTTATGTTTAAA
ACATACCCTTAATCGCCGCACATACCGCCGCCGGTCAATTTGCCTGACTA
CCCTCCCCATCCAGACCTTACATTCCTGTTCTATGACTTGTTTAAAAGGT
TGTTATAACAGTTATTTAACAATTATTTCAACGGAGCTGTGAAAAAGAAC
AATGACTTGATGTATTTCGCAAAAAAAAAGCTTAGACATCATTCAATCTT
CTCTAAATTAGATGTATAAAGCATCAAAAAGTATCTTATCTTCCTACCGG
TCTATAAAGCAAATATGAACCTATCTCTGGAACTCAGGAAATATTGGACC
TTCTGAATTGAAAGTTTTACCAATGATAATTGACCACCTAAGTCGCTGTG
AGAAATTTCAGAGGCCCCTTAGATGCATGGAGGGTATTTGCAATTTATCT
CTTTGTTCTAGTGGATGGTGGTTGGTCTAGCTGGAGTGGTTTTTCTTCTT
GCACACTAAGTTGTGGAAGTGGTACGCAGTATCGAACACGAGCTTGTGAT
AATCCATCAAGTCAGTATGGAGGAAAGTATTGTGAAGGCTATGAACGAGA
AGTAAAATCATGCAATATCAATCCATGTTCTGGTAAGAGTAATCAATGCC
ATTGGGAAATTAGCGGGTTTATCTTCTTACCCAGCTGGCACACAACGTTG
TTTTGACGTTCATCTAACGTTATATGGACGTTGTGAATATTAGAAAAACG
TTAAAACGACGTTGTGTTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
CCCCCCCCCCCCCCCAGGCAAGCATCAGTTGATCCCTCTGGACAACCCAA
ATTACCCCCGGACAGAGCAAATTCACCCCCCAGACAAGGTAAATTTCGAT
GTTTTTTCGCTACCCCCCGGACACTATATCCTCCTGCCCCCATGTATGAA
CATTTTCTGGAATAGCCCAATAAGAATTTGTCCCATCCTTATTTTGTAAA
CAAAAACTTCGGTTCCCTGTAAATTATTTCAGCCAATTCTTGACACTCGT
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00050610-exon-scaffold_18-1575043694:40928..40969 | TCONS_00050610-exon-scaffold_18-1575043694:40928..40969 | Clytia hemisphaerica | exon |
TCONS_00050610-exon-scaffold_18-1575043694:40448..40480 | TCONS_00050610-exon-scaffold_18-1575043694:40448..40480 | Clytia hemisphaerica | exon |
TCONS_00050610-exon-scaffold_18-1575043694:38871..39026 | TCONS_00050610-exon-scaffold_18-1575043694:38871..39026 | Clytia hemisphaerica | exon |
TCONS_00050610-exon-scaffold_18-1575043694:37250..37465 | TCONS_00050610-exon-scaffold_18-1575043694:37250..37465 | Clytia hemisphaerica | exon |
TCONS_00050610-exon-scaffold_18-1575043694:36088..36258 | TCONS_00050610-exon-scaffold_18-1575043694:36088..36258 | Clytia hemisphaerica | exon |
TCONS_00050610-exon-scaffold_18-1575043694:34818..34837 | TCONS_00050610-exon-scaffold_18-1575043694:34818..34837 | Clytia hemisphaerica | exon |
TCONS_00050610-exon-scaffold_18-1510915933:40928..40969 | TCONS_00050610-exon-scaffold_18-1510915933:40928..40969 | Clytia hemisphaerica | exon |
TCONS_00050610-exon-scaffold_18-1510915933:40448..40480 | TCONS_00050610-exon-scaffold_18-1510915933:40448..40480 | Clytia hemisphaerica | exon |
TCONS_00050610-exon-scaffold_18-1510915933:38871..39026 | TCONS_00050610-exon-scaffold_18-1510915933:38871..39026 | Clytia hemisphaerica | exon |
TCONS_00050610-exon-scaffold_18-1510915933:37250..37465 | TCONS_00050610-exon-scaffold_18-1510915933:37250..37465 | Clytia hemisphaerica | exon |
TCONS_00050610-exon-scaffold_18-1510915933:36088..36258 | TCONS_00050610-exon-scaffold_18-1510915933:36088..36258 | Clytia hemisphaerica | exon |
TCONS_00050610-exon-scaffold_18-1510915933:34818..34837 | TCONS_00050610-exon-scaffold_18-1510915933:34818..34837 | Clytia hemisphaerica | exon |
TCONS_00050610-exon-scaffold_18-1491911889:40928..40969 | TCONS_00050610-exon-scaffold_18-1491911889:40928..40969 | Clytia hemisphaerica | exon |
TCONS_00050610-exon-scaffold_18-1491911889:40448..40480 | TCONS_00050610-exon-scaffold_18-1491911889:40448..40480 | Clytia hemisphaerica | exon |
TCONS_00050610-exon-scaffold_18-1491911889:38871..39026 | TCONS_00050610-exon-scaffold_18-1491911889:38871..39026 | Clytia hemisphaerica | exon |
TCONS_00050610-exon-scaffold_18-1491911889:37250..37465 | TCONS_00050610-exon-scaffold_18-1491911889:37250..37465 | Clytia hemisphaerica | exon |
TCONS_00050610-exon-scaffold_18-1491911889:36088..36258 | TCONS_00050610-exon-scaffold_18-1491911889:36088..36258 | Clytia hemisphaerica | exon |
TCONS_00050610-exon-scaffold_18-1491911889:34818..34837 | TCONS_00050610-exon-scaffold_18-1491911889:34818..34837 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_18 | supercontig | scaffold_18:34818..40969 - |
Blast
The following BLAST results are available for this feature:
|