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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050611 ID=TCONS_00050611|Name=TCONS_00050611|organism=Clytia hemisphaerica|type=transcript|length=2166bp
ATTCGTCAACTGTCTATCGATAAGAATGATTGGGTGCAAAATTTTGTGTA
GTGTACTCCTTTCAAGTTTACTTCTAGAGAATGGAAGCTCTTTGGCTATC
TTAGACGACCTGGATCAAGTCACCATGGTTACTAACGACAACGGCAAAGA
ATACGTTCGAGTTTGCTACTACACAAACTGGGCCCAATATCGAAGCGGAT
TGGGAAAATTTACACCTGCGAATATTGATCCTTTTCTTTGTACACACATC
GCGTACTCGTTCGCGAAGATCGTCAACAATCGATTACAATATTATGAATG
GAATGATGTTGAGTATGCTAACATGGTTGGCCAAGTTATGgctctcaaaa
atcaaaatccaaaGCTGAAAGTTTTGCTAGCAGTTGGTGGCTGGACTCAT
GAGACGAACACTAGCCCCTTTTCAGTTATGGTCTCAACAGCTTCCAATCG
ACAAACTTTTATTCAACATTCAATACAGCTTCTTCGCCAGCATGGTTTTG
ATGGTTTGGATTTAGATTGGGAATATCCTGGTGTTCGCCCTAACGAAAAC
AAACCTGGAGATAAACAAAGATTCACAGTTCTATGCAAAGAACTAATGGA
TTCATACAAAAAAGAAGCAATTGATACTGGCTCTGACCGTTTACTCTTAA
CAGCAGCAGTAGCCGCAGGCGAAGCCACCATCAGGAAAGCGTACGAAACA
GACAAATTAGGTTCTCACTTAGATATGTTACATTTGATGTCGTACGATTT
AGCAGGAGCCTGGGAACCAGTCACAGGCCATCACACATCGATGGATGCTA
GTTTGACAAATTCTATCCCTAATGCATTAGATGTTTGGATCAATGGAGGT
TTCCCTGCCAATAAGATTGCTTTAGGTTTGGGAACATACGGTCGATCCTT
CACATTAACTTCCACAGCAAACAATGGTTTGGGAGCAGACGCTATTGGTG
GAGGAGCTACGGGACAATACACTGGTGAATCTGGATATATCGCTTATTAT
GAGATTTGCCAAAAGATCAATCAGGGGATGACAGTCGTTGAAACAAGCAG
TGCAGGTGCAACGTACGGTTACCTTGGTAACTACTGGGTAGGGTATGATA
GTGAGGCTAGCATGATCCATAAAGTTCGATCACTGATTAAAGGGCGCGGC
TTAAAAGGAGCCATGTTCTGGGCCATCGACCTCGATGATTTCACGGGTAG
CTTCTGCAATAACGGTAAATATCCACTCATGAATGCCGTGAAAAATGAAC
TAGCTTCCGGACAGCCCTTTACTACACAACCACCGTCAGAAACAACTGTG
AAACCCTCACCAACAGAAACACCGATTACTTCCGAAGAGGCTACTACGGA
AGCACCCGTGACCGCTCCACCAATCACAACTCTAGTGCCACAAACAACTG
AACAGGAAACAACTGAAACACCTTCTGGTAAATGCTACCCCACACCAAAC
TATGCTTCACAGCCAGGTATGAAACAATGGTGTACCACTAATTGCAAACC
TGGTGAATTTTCTTATTGTCCTGCTTCTCATTGTATATGCGATAGAACTA
CGCCTCAACCACCCGCTACCACTCAGGTATCACCCACCACCCAACCACTA
CCCACCACCCAACCACCAGCTACCACTCAACTACCAGCCACCACCCAACC
ACAAGAAACAGAATCCCCAGGAACCGCTTGTCACAGTATCCCTCCTTATG
ACAAACAACCCGGAATGGATCAATGGTGTGAACAAAATTGTGCACTTGGT
TATTGTCCAATATCTCATTGTAAATGTGGTGGTGGAACGGAGTCACCATA
CGCCAGTTGCCATGGTGTCCCACCATATCACACACAAGCCGGTATTGATG
GTTGGTGTCGACAAAATTGTGCTTCAGATTACTGTCCTTCAAGCCATTGT
AAATGTGATTGATATTTTGGTAACGAAAAACGacgttttttgaaaacaat
tagAACTTAATTATTATCAAACAAACGCTTCAAACAACCACTGGTATCAA
GTGGCCTAggaatcatttttcatttatttgaaTAAGCTCTGTTTACTCTG
ATTCGAATCCTATACGAGATTTCCTTTTGGAGAGTGCGACACGCTTTTAT
TTAAGGGCACTGGCCATCGGATACGAATTTTACAGGTAAACCTTTTGTAT
TGACTACGCActgaca Run BLAST on NCBI protein sequence of TCONS_00050611-protein >TCONS_00050611-protein ID=TCONS_00050611-protein|Name=TCONS_00050611-protein|organism=Clytia hemisphaerica|type=polypeptide|length=636bp
FVNCLSIRMIGCKILCSVLLSSLLLENGSSLAILDDLDQVTMVTNDNGKE
YVRVCYYTNWAQYRSGLGKFTPANIDPFLCTHIAYSFAKIVNNRLQYYEW
NDVEYANMVGQVMALKNQNPKLKVLLAVGGWTHETNTSPFSVMVSTASNR
QTFIQHSIQLLRQHGFDGLDLDWEYPGVRPNENKPGDKQRFTVLCKELMD
SYKKEAIDTGSDRLLLTAAVAAGEATIRKAYETDKLGSHLDMLHLMSYDL
AGAWEPVTGHHTSMDASLTNSIPNALDVWINGGFPANKIALGLGTYGRSF
TLTSTANNGLGADAIGGGATGQYTGESGYIAYYEICQKINQGMTVVETSS
AGATYGYLGNYWVGYDSEASMIHKVRSLIKGRGLKGAMFWAIDLDDFTGS
FCNNGKYPLMNAVKNELASGQPFTTQPPSETTVKPSPTETPITSEEATTE
APVTAPPITTLVPQTTEQETTETPSGKCYPTPNYASQPGMKQWCTTNCKP
GEFSYCPASHCICDRTTPQPPATTQVSPTTQPLPTTQPPATTQLPATTQP
QETESPGTACHSIPPYDKQPGMDQWCEQNCALGYCPISHCKCGGGTESPY
ASCHGVPPYHTQAGIDGWCRQNCASDYCPSSHCKCD Run BLAST on NCBI transcript from alignment at scaffold_18:44369..47515- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050611 ID=TCONS_00050611|Name=TCONS_00050611|organism=Clytia hemisphaerica|type=transcript|length=3147bp|location=Sequence derived from alignment at scaffold_18:44369..47515- (Clytia hemisphaerica)
ATTCGTCAACTGTCTATCGATAAGAATGATTGGGTGCAAAATTTTGTGTA
GTGTACTCCTTTCAAGTTTACTTCTAGAGAATGGAAGCTCTTTGGCTATC
TTAGACGACCTGGATCAAGTCACCATGGTTACTAACGACAACGGCAAAGA
ATACGTTCGAGTTTGCTACTACACAAACTGGGCCCAATATCGAAGCGGAT
TGGGAAAATTTACACCTGCGAATATTGATCCTTTTCTTTGTACACACATC
GCGTACTCGTTCGCGAAGATCGTCAACAATCGATTACAATATTATGAATG
GAATGATGTTGAGTATGCTAACATGGTTGGCCAAGTTATGGCTCTCAAAA
ATCAAAATCCAAAGCTGAAAGTTTTGCTAGCAGTTGGTGGCTGGACTCAT
GAGACGAACACTAGCCCCTTTTCAGTTATGGTCTCAACAGCTTCCAATCG
ACAAACTTTTATTCAACATTCAATACAGCTTCTTCGCCAGCATGGTTTTG
ATGGTTTGGATTTAGATTGGGAATATCCTGGTGTTCGCCCTAACGAAAAC
AAACCTGGAGATAAACAAAGATTCACAGTTCTATGCAAAGAACTAATGGA
TTCATACAAAAAAGAAGCAATTGATACTGGCTCTGACCGTTTACTCTTAA
CAGCAGCAGTAGCCGCAGGCGAAGCCACCATCAGGAAAGCGTACGAAACA
GACAAATTAGGTTCTCACTTAGATATGTTACATTTGATGTCGTACGATTT
AGCAGGAGCCTGGGAACCAGTCACAGGCCATCACACATCGATGGATGCTA
GTTTGACAAATTCTATCCCTAATGCATTAGATGTTTGGATCAATGGAGGT
TTCCCTGCCAATAAGGTACTACTTATGTGTTATATTCATGCATTTGAAGT
TTTAATCGTTTGCTCAAATAAAAGTCTTAATCAAAGTCAATCTGTGCTCA
GATTTTTCTTATCCTTCTTGGATAAAGGATTACAGCCCTTTGAACGGCCA
AAGAGTTATTGTATATGTATTCCCTTCTTCTTCTTTCTTTGTAGATTGCT
TTAGGTTTGGGAACATACGGTCGATCCTTCACATTAACTTCCACAGCAAA
CAATGGTTTGGGAGCAGACGCTATTGGTGGAGGAGCTACGGGACAATACA
CTGGTGAATCTGGATATATCGCTTATTATGAGATTTGCCAAAAGATCAAT
CAGGGTACGTATTAAAAAAACAAAAAAGCGTTTTGCTTTATATCTGGATT
TTCAATTTTTGAATCACCATCAAATTCATAAATTTTTCACAGTTAGACTT
TAGCTTGAATATTACTCTTTTGTGCCCCCCCCCCCATTTTATGAAATTTT
CCTTTTTAGAGTTTTTTTGGGGAAATCACCCCAACCAAAATCACTTGATA
TTGACCGGCCCCCATTTTACGAATTTTCTCCCAGTCTACCAACCCCCTGC
TTATTCCACCCTCCACCAATTAAGCACAAAAGAGTAGGGTTGAAAGTGTA
ATTGGGCTCTTCCAGAAAAAATCCGTTCATGGGGGGTGGAGGATGAATTG
TCCAGGGGTATTGAAAAAATACCAAAAAAATGCAATGTCCAGGGGGTGAA
TTCCAATGTCCAGGGGTAATTTTTTGTGTCCACGGGGTTGATTTGATGTT
TGCCCAGGGGTATAACCCGTGTCCAGGGGGTTAAAAATCAAAATGTCCAG
GGGTAATTCATGAAAAAAACTATATATCCTCCACCCCCCATGAACGGATT
TTTTCTGGAAGAGCCCATTATTTAATCCAGTAACGATTTTCTTATAGTAA
AGTTTCCTCGAACTCGTATAAATAGTTTTACTTTCAGGGAAAATGATACC
CTACAAGGATAACAGAAATATATATCTTTCCATGTGGTGTTCGTAGGAAG
GAGATAAAAGCAAGAAAAAGCGTTTTATTTGTCTATTCGTTTTATTGCAT
CCGAAATGAAATTATGATTACATTTTTGATATTTTTTTTCTTATTTTTTT
TGCCAGGGATGACAGTCGTTGAAACAAGCAGTGCAGGTGCAACGTACGGT
TACCTTGGTAACTACTGGGTAGGGTATGATAGTGAGGCTAGCATGATCCA
TAAAGTTCGATCACTGATTAAAGGGCGCGGCTTAAAAGGAGCCATGTTCT
GGGCCATCGACCTCGATGATTTCACGGGTAGCTTCTGCAATAACGGTAAA
TATCCACTCATGAATGCCGTGAAAAATGAACTAGCTTCCGGACAGCCCTT
TACTACACAACCACCGTCAGAAACAACTGTGAAACCCTCACCAACAGAAA
CACCGATTACTTCCGAAGAGGCTACTACGGAAGCACCCGTGACCGCTCCA
CCAATCACAACTCTAGTGCCACAAACAACTGAACAGGAAACAACTGAAAC
ACCTTCTGGTAAATGCTACCCCACACCAAACTATGCTTCACAGCCAGGTA
TGAAACAATGGTGTACCACTAATTGCAAACCTGGTGAATTTTCTTATTGT
CCTGCTTCTCATTGTATATGCGATAGAACTACGCCTCAACCACCCGCTAC
CACTCAGGTATCACCCACCACCCAACCACTACCCACCACCCAACCACCAG
CTACCACTCAACTACCAGCCACCACCCAACCACAAGAAACAGAATCCCCA
GGAACCGCTTGTCACAGTATCCCTCCTTATGACAAACAACCCGGAATGGA
TCAATGGTGTGAACAAAATTGTGCACTTGGTTATTGTCCAATATCTCATT
GTAAATGTGGTGGTGGAACGGAGTCACCATACGCCAGTTGCCATGGTGTC
CCACCATATCACACACAAGCCGGTATTGATGGTTGGTGTCGACAAAATTG
TGCTTCAGATTACTGTCCTTCAAGCCATTGTAAATGTGATTGATATTTTG
GTAACGAAAAACGACGTTTTTTGAAAACAATTAGAACTTAATTATTATCA
AACAAACGCTTCAAACAACCACTGGTATCAAGTGGCCTAGGAATCATTTT
TCATTTATTTGAATAAGCTCTGTTTACTCTGATTCGAATCCTATACGAGA
TTTCCTTTTGGAGAGTGCGACACGCTTTTATTTAAGGGCACTGGCCATCG
GATACGAATTTTACAGGTAAACCTTTTGTATTGACTACGCACTGACA Coding sequence (CDS) from alignment at scaffold_18:44369..47515- >TCONS_00050611 ID=TCONS_00050611|Name=TCONS_00050611|organism=Clytia hemisphaerica|type=CDS|length=5733bp|location=Sequence derived from alignment at scaffold_18:44369..47515- (Clytia hemisphaerica)
GGATGACAGTCGTTGAAACAAGCAGTGCAGGTGCAACGTACGGTTACCTT
GGTAACTACTGGGTAGGGTATGATAGTGAGGCTAGCATGATCCATAAAGT
TCGATCACTGATTAAAGGGCGCGGCTTAAAAGGAGCCATGTTCTGGGCCA
TCGACCTCGATGATTTCACGGGTAGCTTCTGCAATAACGGTAAATATCCA
CTCATGAATGCCGTGAAAAATGAACTAGCTTCCGGACAGCCCTTTACTAC
ACAACCACCGTCAGAAACAACTGTGAAACCCTCACCAACAGAAACACCGA
TTACTTCCGAAGAGGCTACTACGGAAGCACCCGTGACCGCTCCACCAATC
ACAACTCTAGTGCCACAAACAACTGAACAGGAAACAACTGAAACACCTTC
TGGTAAATGCTACCCCACACCAAACTATGCTTCACAGCCAGGTATGAAAC
AATGGTGTACCACTAATTGCAAACCTGGTGAATTTTCTTATTGTCCTGCT
TCTCATTGTATATGCGATAGAACTACGCCTCAACCACCCGCTACCACTCA
GGTATCACCCACCACCCAACCACTACCCACCACCCAACCACCAGCTACCA
CTCAACTACCAGCCACCACCCAACCACAAGAAACAGAATCCCCAGGAACC
GCTTGTCACAGTATCCCTCCTTATGACAAACAACCCGGAATGGATCAATG
GTGTGAACAAAATTGTGCACTTGGTTATTGTCCAATATCTCATTGTAAAT
GTGGTGGTGGAACGGAGTCACCATACGCCAGTTGCCATGGTGTCCCACCA
TATCACACACAAGCCGGTATTGATGGTTGGTGTCGACAAAATTGTGCTTC
AGATTACTGTCCTTCAAGCCATTGTAAATGTGATTGAATTGCTTTAGGTT
TGGGAACATACGGTCGATCCTTCACATTAACTTCCACAGCAAACAATGGT
TTGGGAGCAGACGCTATTGGTGGAGGAGCTACGGGACAATACACTGGTGA
ATCTGGATATATCGCTTATTATGAGATTTGCCAAAAGATCAATCAGGTTC
GTCAACTGTCTATCGATAAGAATGATTGGGTGCAAAATTTTGTGTAGTGT
ACTCCTTTCAAGTTTACTTCTAGAGAATGGAAGCTCTTTGGCTATCTTAG
ACGACCTGGATCAAGTCACCATGGTTACTAACGACAACGGCAAAGAATAC
GTTCGAGTTTGCTACTACACAAACTGGGCCCAATATCGAAGCGGATTGGG
AAAATTTACACCTGCGAATATTGATCCTTTTCTTTGTACACACATCGCGT
ACTCGTTCGCGAAGATCGTCAACAATCGATTACAATATTATGAATGGAAT
GATGTTGAGTATGCTAACATGGTTGGCCAAGTTATGGCTCTCAAAAATCA
AAATCCAAAGCTGAAAGTTTTGCTAGCAGTTGGTGGCTGGACTCATGAGA
CGAACACTAGCCCCTTTTCAGTTATGGTCTCAACAGCTTCCAATCGACAA
ACTTTTATTCAACATTCAATACAGCTTCTTCGCCAGCATGGTTTTGATGG
TTTGGATTTAGATTGGGAATATCCTGGTGTTCGCCCTAACGAAAACAAAC
CTGGAGATAAACAAAGATTCACAGTTCTATGCAAAGAACTAATGGATTCA
TACAAAAAAGAAGCAATTGATACTGGCTCTGACCGTTTACTCTTAACAGC
AGCAGTAGCCGCAGGCGAAGCCACCATCAGGAAAGCGTACGAAACAGACA
AATTAGGTTCTCACTTAGATATGTTACATTTGATGTCGTACGATTTAGCA
GGAGCCTGGGAACCAGTCACAGGCCATCACACATCGATGGATGCTAGTTT
GACAAATTCTATCCCTAATGCATTAGATGTTTGGATCAATGGAGGTTTCC
CTGCCAATAAGGGATGACAGTCGTTGAAACAAGCAGTGCAGGTGCAACGT
ACGGTTACCTTGGTAACTACTGGGTAGGGTATGATAGTGAGGCTAGCATG
ATCCATAAAGTTCGATCACTGATTAAAGGGCGCGGCTTAAAAGGAGCCAT
GTTCTGGGCCATCGACCTCGATGATTTCACGGGTAGCTTCTGCAATAACG
GTAAATATCCACTCATGAATGCCGTGAAAAATGAACTAGCTTCCGGACAG
CCCTTTACTACACAACCACCGTCAGAAACAACTGTGAAACCCTCACCAAC
AGAAACACCGATTACTTCCGAAGAGGCTACTACGGAAGCACCCGTGACCG
CTCCACCAATCACAACTCTAGTGCCACAAACAACTGAACAGGAAACAACT
GAAACACCTTCTGGTAAATGCTACCCCACACCAAACTATGCTTCACAGCC
AGGTATGAAACAATGGTGTACCACTAATTGCAAACCTGGTGAATTTTCTT
ATTGTCCTGCTTCTCATTGTATATGCGATAGAACTACGCCTCAACCACCC
GCTACCACTCAGGTATCACCCACCACCCAACCACTACCCACCACCCAACC
ACCAGCTACCACTCAACTACCAGCCACCACCCAACCACAAGAAACAGAAT
CCCCAGGAACCGCTTGTCACAGTATCCCTCCTTATGACAAACAACCCGGA
ATGGATCAATGGTGTGAACAAAATTGTGCACTTGGTTATTGTCCAATATC
TCATTGTAAATGTGGTGGTGGAACGGAGTCACCATACGCCAGTTGCCATG
GTGTCCCACCATATCACACACAAGCCGGTATTGATGGTTGGTGTCGACAA
AATTGTGCTTCAGATTACTGTCCTTCAAGCCATTGTAAATGTGATTGAAT
TGCTTTAGGTTTGGGAACATACGGTCGATCCTTCACATTAACTTCCACAG
CAAACAATGGTTTGGGAGCAGACGCTATTGGTGGAGGAGCTACGGGACAA
TACACTGGTGAATCTGGATATATCGCTTATTATGAGATTTGCCAAAAGAT
CAATCAGGTTCGTCAACTGTCTATCGATAAGAATGATTGGGTGCAAAATT
TTGTGTAGTGTACTCCTTTCAAGTTTACTTCTAGAGAATGGAAGCTCTTT
GGCTATCTTAGACGACCTGGATCAAGTCACCATGGTTACTAACGACAACG
GCAAAGAATACGTTCGAGTTTGCTACTACACAAACTGGGCCCAATATCGA
AGCGGATTGGGAAAATTTACACCTGCGAATATTGATCCTTTTCTTTGTAC
ACACATCGCGTACTCGTTCGCGAAGATCGTCAACAATCGATTACAATATT
ATGAATGGAATGATGTTGAGTATGCTAACATGGTTGGCCAAGTTATGGCT
CTCAAAAATCAAAATCCAAAGCTGAAAGTTTTGCTAGCAGTTGGTGGCTG
GACTCATGAGACGAACACTAGCCCCTTTTCAGTTATGGTCTCAACAGCTT
CCAATCGACAAACTTTTATTCAACATTCAATACAGCTTCTTCGCCAGCAT
GGTTTTGATGGTTTGGATTTAGATTGGGAATATCCTGGTGTTCGCCCTAA
CGAAAACAAACCTGGAGATAAACAAAGATTCACAGTTCTATGCAAAGAAC
TAATGGATTCATACAAAAAAGAAGCAATTGATACTGGCTCTGACCGTTTA
CTCTTAACAGCAGCAGTAGCCGCAGGCGAAGCCACCATCAGGAAAGCGTA
CGAAACAGACAAATTAGGTTCTCACTTAGATATGTTACATTTGATGTCGT
ACGATTTAGCAGGAGCCTGGGAACCAGTCACAGGCCATCACACATCGATG
GATGCTAGTTTGACAAATTCTATCCCTAATGCATTAGATGTTTGGATCAA
TGGAGGTTTCCCTGCCAATAAGGGATGACAGTCGTTGAAACAAGCAGTGC
AGGTGCAACGTACGGTTACCTTGGTAACTACTGGGTAGGGTATGATAGTG
AGGCTAGCATGATCCATAAAGTTCGATCACTGATTAAAGGGCGCGGCTTA
AAAGGAGCCATGTTCTGGGCCATCGACCTCGATGATTTCACGGGTAGCTT
CTGCAATAACGGTAAATATCCACTCATGAATGCCGTGAAAAATGAACTAG
CTTCCGGACAGCCCTTTACTACACAACCACCGTCAGAAACAACTGTGAAA
CCCTCACCAACAGAAACACCGATTACTTCCGAAGAGGCTACTACGGAAGC
ACCCGTGACCGCTCCACCAATCACAACTCTAGTGCCACAAACAACTGAAC
AGGAAACAACTGAAACACCTTCTGGTAAATGCTACCCCACACCAAACTAT
GCTTCACAGCCAGGTATGAAACAATGGTGTACCACTAATTGCAAACCTGG
TGAATTTTCTTATTGTCCTGCTTCTCATTGTATATGCGATAGAACTACGC
CTCAACCACCCGCTACCACTCAGGTATCACCCACCACCCAACCACTACCC
ACCACCCAACCACCAGCTACCACTCAACTACCAGCCACCACCCAACCACA
AGAAACAGAATCCCCAGGAACCGCTTGTCACAGTATCCCTCCTTATGACA
AACAACCCGGAATGGATCAATGGTGTGAACAAAATTGTGCACTTGGTTAT
TGTCCAATATCTCATTGTAAATGTGGTGGTGGAACGGAGTCACCATACGC
CAGTTGCCATGGTGTCCCACCATATCACACACAAGCCGGTATTGATGGTT
GGTGTCGACAAAATTGTGCTTCAGATTACTGTCCTTCAAGCCATTGTAAA
TGTGATTGAATTGCTTTAGGTTTGGGAACATACGGTCGATCCTTCACATT
AACTTCCACAGCAAACAATGGTTTGGGAGCAGACGCTATTGGTGGAGGAG
CTACGGGACAATACACTGGTGAATCTGGATATATCGCTTATTATGAGATT
TGCCAAAAGATCAATCAGGTTCGTCAACTGTCTATCGATAAGAATGATTG
GGTGCAAAATTTTGTGTAGTGTACTCCTTTCAAGTTTACTTCTAGAGAAT
GGAAGCTCTTTGGCTATCTTAGACGACCTGGATCAAGTCACCATGGTTAC
TAACGACAACGGCAAAGAATACGTTCGAGTTTGCTACTACACAAACTGGG
CCCAATATCGAAGCGGATTGGGAAAATTTACACCTGCGAATATTGATCCT
TTTCTTTGTACACACATCGCGTACTCGTTCGCGAAGATCGTCAACAATCG
ATTACAATATTATGAATGGAATGATGTTGAGTATGCTAACATGGTTGGCC
AAGTTATGGCTCTCAAAAATCAAAATCCAAAGCTGAAAGTTTTGCTAGCA
GTTGGTGGCTGGACTCATGAGACGAACACTAGCCCCTTTTCAGTTATGGT
CTCAACAGCTTCCAATCGACAAACTTTTATTCAACATTCAATACAGCTTC
TTCGCCAGCATGGTTTTGATGGTTTGGATTTAGATTGGGAATATCCTGGT
GTTCGCCCTAACGAAAACAAACCTGGAGATAAACAAAGATTCACAGTTCT
ATGCAAAGAACTAATGGATTCATACAAAAAAGAAGCAATTGATACTGGCT
CTGACCGTTTACTCTTAACAGCAGCAGTAGCCGCAGGCGAAGCCACCATC
AGGAAAGCGTACGAAACAGACAAATTAGGTTCTCACTTAGATATGTTACA
TTTGATGTCGTACGATTTAGCAGGAGCCTGGGAACCAGTCACAGGCCATC
ACACATCGATGGATGCTAGTTTGACAAATTCTATCCCTAATGCATTAGAT
GTTTGGATCAATGGAGGTTTCCCTGCCAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050611-exon-scaffold_18-1575043694:46651..47515 | TCONS_00050611-exon-scaffold_18-1575043694:46651..47515 | Clytia hemisphaerica | exon |
| TCONS_00050611-exon-scaffold_18-1575043694:46312..46471 | TCONS_00050611-exon-scaffold_18-1575043694:46312..46471 | Clytia hemisphaerica | exon |
| TCONS_00050611-exon-scaffold_18-1575043694:44369..45509 | TCONS_00050611-exon-scaffold_18-1575043694:44369..45509 | Clytia hemisphaerica | exon |
| TCONS_00050611-exon-scaffold_18-1510915933:46651..47515 | TCONS_00050611-exon-scaffold_18-1510915933:46651..47515 | Clytia hemisphaerica | exon |
| TCONS_00050611-exon-scaffold_18-1510915933:46312..46471 | TCONS_00050611-exon-scaffold_18-1510915933:46312..46471 | Clytia hemisphaerica | exon |
| TCONS_00050611-exon-scaffold_18-1510915933:44369..45509 | TCONS_00050611-exon-scaffold_18-1510915933:44369..45509 | Clytia hemisphaerica | exon |
| TCONS_00050611-exon-scaffold_18-1491911889:46651..47515 | TCONS_00050611-exon-scaffold_18-1491911889:46651..47515 | Clytia hemisphaerica | exon |
| TCONS_00050611-exon-scaffold_18-1491911889:46312..46471 | TCONS_00050611-exon-scaffold_18-1491911889:46312..46471 | Clytia hemisphaerica | exon |
| TCONS_00050611-exon-scaffold_18-1491911889:44369..45509 | TCONS_00050611-exon-scaffold_18-1491911889:44369..45509 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:44369..47515 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| molecular_function |
GO:0008061 |
chitin binding |
| molecular_function |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
Blast
BLAST of TCONS_00050611 vs. Swiss-Prot (Human)
Match: CHIT1 (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1) HSP 1 Score: 343.969 bits (881), Expect = 1.694e-109 Identity = 180/403 (44.67%), Postives = 252/403 (62.53%), Query Frame = 2
Query: 161 VCYYTNWAQYRSGLGKFTPANIDPFLCTHIAYSFAKIVNNRLQYYEWNDVEYANMVGQVMALKNQNPKLKVLLAVGGWTHETNTSPFSVMVSTASNRQTFIQHSIQLLRQHGFDGLDLDWEYPGVRPNENKPG-DKQRFTVLCKELMDSYKKEAIDTGSDRLLLTAAVAAGEATIRKAYETDKLGSHLDMLHLMSYDLAGAWEPVTGHHTSM-------DASLTNSIPNALDVWINGGFPANKIALGLGTYGRSFTLTSTANNGLGADAIGGGATGQYTGESGYIAYYEICQKINQGMTVVETSSAGATYGYLGNYWVGYDSEASMIHKVRSLIKGRGLKGAMFWAIDLDDFTGSFCNNGKYPLMNAVKNELA-----SGQPFTTQP----PSETTVKPSPTE 1318
VCY+TNWAQYR G +F P ++DP LCTH+ Y+FA + N++L EWND + + LK NPKLK LLA+GGW T F+ MV+TA+NRQTF+ +I+ LR++ FDGLDLDWEYPG ++ P DK+RFT L ++L +++++EA +G +RLLL+AAV AG+ + YE DK+ +LD ++LM+YD G+WE VTGH++ + A+ + ++ A+ W+ G PA+K+ LG+ TYGRSFTL S+++ +GA A G G G +T E G +AYYE+C +G T Y + N WVG+D S KV S +K +GL GAM WA+DLDDF G CN G+YPL+ ++ EL+ SG P P PSE PSP +
Sbjct: 25 VCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWND---ETLYQEFNGLKKMNPKLKTLLAIGGWNF--GTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPG---SQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW--KGATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKV-SYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQELSLPYLPSGTPELEVPKPGQPSEPEHGPSPGQ 416
The following BLAST results are available for this feature:
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