TCONS_00050613 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050613
Unique NameTCONS_00050613
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050613 ID=TCONS_00050613|Name=TCONS_00050613|organism=Clytia hemisphaerica|type=transcript|length=1602bp
gaatttttaaagggtttttgctaaattttttataatttaacCCGTTTCTC
TTTATCagttcaaaaacaaaataattcaaaagAAATGTTAGAAAGAGACA
CAGAAGTCAGCATTTGCGTCAAATACCTTCTGTTCTTCTTCAATGTTTTC
TTCTGGttacTTGGTGGTTTCCTTTTGGGAGTTGGACTATGGGCTCGCGT
TGTATACGCACAAGAAAATGAATCTCTTGGCTTATTCGGTGGTTGGCATT
TAGATCCAGCTGTGCTTTTCATTATCGTGGGTGTGATCATGTTTTTATTG
GGGTTCTGTGGATGTATTGGTGCTTTGCGTGAGAATATCTGCTTGCTCAA
ATTCTTTACGATTTCATTATCGATCATTTTCTTCACTCAACTTGCTGGTG
GAATCATTGGTTTTGTCTTCAGAGCTAAGGTGAAAGAACTGGTCAAGACG
AAGTTACATGACACCATCGTCCACTATCGAGACAATGCAAACCTTCAAAA
TCTCATCGATTTTTCACAAGAAACTTTCAAATGCTGTGGTTTGGATAGCT
ACCAAGATTGGCAGCAAAATGCTTACTTCAATTGTACGCAGATTGGACCA
GAAGCTTGTTCTGTACCTTACTCCTGTTGCAAAACTGACATGTTAAATAC
GCAATGTGGATATGGTGTCAACAAAGCTTCAATGCCGGCTTCAATGAGGT
TCAAGCGGATATATACGGACGGATGTGTGGATGGGATCACCGGATGGTTT
TATGAACATATACAAGTTGTTGGAGGTTTAGCTGTCGGAGGAGCCGTCAT
GCAGATCATTGTCATTGCGTTTGCTTCTTCAATGATCGCTGATGTTCGTC
GACAGAAAGCTAAATGGGAGACGCCAAGGAATCAATTCAATGAACCATTA
TATCCTCTCAATATGTAAAGGTATTCATTACTGAAAACGATGAAGAGTAA
AggtattttgaatttctttttcggttgaaaaaaagtttttcctttaTGTT
CACTTTACATGGTTACCAAAGATTTTTGCGTATAATGCTGCAATAAAAAG
AAATCGCAGGGGATGCGTGTTGTTAGTTTTTTTTGGTTGAGGGTCCAAAT
ATAACAAAAATTTGGAGTGCCAAGGAGATAAACATCAAACAGATCACCGT
TCTGTAAATTCTCTCAAACATGaagtttaaattatttttcaaatcaagaa
CTCGATGATAAATGAGAAAAGCTGGCGTATTCTTACAGTtattgaacatt
tttaaaatgacTTTCATTTGGTTAAATTCGCTGGATTTTGTTGTATATTC
AAACAAATCAGTTTACTGGTTATCATTTTTTGGTTTCGCACAAACTGCAC
TAACTAAAGAAATTAACCATCGAAGTGGAATGAGTGAACTTGACATTGTA
GTTGTGTTAATTCTTCCTGTTAATAGGTCATTCCCACGCCCATGTTTCGA
GTCTAACTTATTTAGATTAGCCTGGGACTGGTCACCATTAGTGAGTTtag
ccagggggggggtcaacatttataataccaacccatagcccaaaaacctg
acttttgaccttttgagctaagttaacaccaccaccccaaaattggtatc
ga
Run BLAST on NCBI

protein sequence of TCONS_00050613-protein

>TCONS_00050613-protein ID=TCONS_00050613-protein|Name=TCONS_00050613-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MLERDTEVSICVKYLLFFFNVFFWLLGGFLLGVGLWARVVYAQENESLGL
FGGWHLDPAVLFIIVGVIMFLLGFCGCIGALRENICLLKFFTISLSIIFF
TQLAGGIIGFVFRAKVKELVKTKLHDTIVHYRDNANLQNLIDFSQETFKC
CGLDSYQDWQQNAYFNCTQIGPEACSVPYSCCKTDMLNTQCGYGVNKASM
PASMRFKRIYTDGCVDGITGWFYEHIQVVGGLAVGGAVMQIIVIAFASSM
IADVRRQKAKWETPRNQFNEPLYPLNM
Run BLAST on NCBI

transcript from alignment at scaffold_18:79834..87794-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050613 ID=TCONS_00050613|Name=TCONS_00050613|organism=Clytia hemisphaerica|type=transcript|length=7961bp|location=Sequence derived from alignment at scaffold_18:79834..87794- (Clytia hemisphaerica)
GAATTTTTAAAGGGTTTTTGCTAAATTTTTTATAATTTAACCCGTTTCTC
TTTATCAGTTCAAAAACAAAATAATTCAAAAGAAATGTTAGAAAGAGACA
CAGAAGTCAGCATTTGCGTCAAATACCTTCTGTTCTTCTTCAATGTTTTC
TTCTGGGTAAGAATTTTCATTTTACTCAATCTTTGTTGATGGTTTTTTTT
ACCAATAGTAAAAGCTCGCCGATAGTAAAAGTAGCACAGTGCGTAACCAT
TTAGGCCCATTTAATGATATCGAAACTCATATATTTTAAGATTGTTGTCT
TATTACGAGACCTTAAAAATGTATCAAGAGTTGACTAAGTTCGTATTTCA
TACTCAGAGTTTCATGGCGTCTCTGAGCCAATCTTCAGTGAAATTGTAAT
TAGTTCCAAGTCTAGACTATAAAATATACACTATAGAATGCTGAATTATT
TTGTTTTAGTTACTTGGTGGTTTCCTTTTGGGAGTTGGACTATGGGCTCG
CGTTGTATACGCACAAGAAAATGAATCTCTTGGCTTATTCGGTGGTTGGC
ATTTAGATCCAGCTGTGCTTTTCATTATCGTGGGTGTGATCATGTTTTTA
TTGGGGTTCTGTGGATGTATTGGTGCTTTGCGTGAGAATATCTGCTTGCT
CAAATTCGTAAGTTTTTCATTTGTTTCAAATGTGATTTCTCTACGCTATC
ACGAGGATTGAATTTAATTTACAAGTTTAAAAGTGTTGAAATCTGCCATC
ATAGTATCCTTAAAAATACGTTAACAAGATTAGACACTTCCAATAAAACT
CGACAAATTTTTATGGTCATTCTTCTTAATCTTAATGCAGAGAAAGTGCA
AAGGGAAAAAATGATATTTAATTTTTTTTTATTATGATGATATATAAATG
ACTCTTTAGAAAATTTACAAAATGTCAGTTCCTGTGGAAATCAATCCTAT
ACAATATTTTGAGCTCCAAGGTTTGACTGATCTTTGCTAAAGACAGTAGA
AATAGATTTGAAAGGTGATGTTTTCCTTGTTTACTTTTAGTTTACGATTT
CATTATCGATCATTTTCTTCACTCAACTTGCTGGTGGAATCATTGGTTTT
GTCTTCAGAGCTAAGGTAAAGTTTTCCGCATTTCTTTATGGTTGTAATAA
CTCTAATAAATTCAACAGTATGCTGTTCTAAAGTTTCTGTCCAGCTAGTT
ATTCTGTTACAGTTTTAATTTGATTTTTGCTTAGGTAATTACATACTTCA
ATGAGCTATTGACGTTTTTAAACTCTTTAAGATTGTACGCGGTAATTCAG
AAACATTTTCAACATCAGGGAAAATTTATTACGAAATTGATTTTCGATGA
ATAATTGCAGGTGAAAGAACTGGTCAAGACGAAGTTACATGACACCATCG
TCCACTATCGAGACAATGCAAACCTTCAAAATCTCATCGATTTTTCACAA
GAAACTGTAAGTTCAAAAGGGTATCTTTTGTTTCAGAAAACAAACGAAAG
CACAAAATAAAATGATGCGCTTTATTAAGAGCTTGTTGCTCGAAGATCGC
GAGACAGAAATTCAACGTCAAATCGAATACACGTATTTCTTATGGTAGAT
AGCAGATTCATGTAAAAAAGTTACACAAAAAGACGTAAAGTAAAGCTCTG
ATTGGCTGATCATTCTTTTTCAAAATGTCCAGAGTATGAGGTAATCTTTG
CATGTCTCAGTCAATTAATGCTTTACTCGACGTTTTTTCGTGACTTTTTT
ATATGAATCGGTTTCGTGTTTTTCAATAAGAGCATCGAGAATTCACTCAT
TATCTGATAAATTTTTCACGCTGTCTTTTTTTAGTTCAAATGCTGTGGTT
TGGATAGCTACCAAGATTGGCAGCAAAATGCTTACTTCAATTGTACGCAG
ATTGGACCAGAAGCTTGTTCTGTACCTTACTCCTGTTGCAAAACTGTAAG
TTGATACACAGACCCGATGTCTACGGATAATTTCAAAATTCATTGCTGTA
GAGGATCTGTTGTCACATGGTTTCAGCCCCCCCCTTAAAATAAGGGGTGA
TTTAAAATTTAGAGAAAAACACAAAGGGCAAAAATGTTAAAAACTGAGAA
ATAAGGGGGGACTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNATCATCAAAAACAGCAAGCAAACTTTTCTCTTGACACTTACCTTCTT
TGCACATAAAAATACCAAAAAATGCAACCGTTTTCATCAAAACTCGTTAC
GGAATTTAGAAATATGGTAAAAAAAGCTATTCCCATGTGGAATGATATTT
TTGGAAAAGCTAAAAAAAAGTTTTGAAAATCTCAAAGAGAGGTTTCGATA
TTATGTGTGTGCTATGTGAGAAAACTTTTGAAAAGATAGATCACTATTCC
TCGACTAGTTGCCCAAAGAATTTGGGTCTGCATCGAGTTTGCTCGTGTTG
GAAATGTTTCATGACTTGCAAATAAGATGGAGAAACTGTTGGTAAAATTT
AAATAAGAAAAAAAACCACCAAAAAAAACAATAAAATTATGTTTTTGTCA
TCTTGTCTTATTGATAGCTTGATTGCTGTTTTTAATGATTTTTTGAAATT
TCGGCTTGGAAAAAAAGTCAGTTTTTTAAAAATAACTTTCGAACTACTTG
TTCAAATTTAATGTATGATAGCTCAAAATTCAAGTTAGAACATCCTCTAT
ACGATAAAAAAAGAATGAACAAAAAATTTTAATCCTGAAGCTCACAATAT
CTCGATAAACCTGTATACTTTTTTTTGGTGCACCCGGTATTTTTGTTAAC
ATTCGAAAACCTCCTTTTTTTCTTTTGTTTTTTCTTTCTTTTCAATTAAA
AGAAGCTATTGTAACGTAAAATTTCTTTGTTCTTTTTTATATTGAAGAAA
AAAAATGTCTTTGTTTTTATTATATAGTANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAGAATAAGGGGACAAAAGTGTCCCCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGCAATTAACGATTAATTGCACTCCTCTAAACCAATCAGATTCGAGTAA
TTTTGCACGGCTGACGATTATTCGTTTTAATTAAATGCTATACTTCGAAA
TCACACGAACAGAGTAGATGGGTACTCCCAGCTACTGTTTTCATTGTCTT
TTCTGGTTTGAAATTCATCAAACTGAACCCTGTGATGGAGTGTGGGTGAG
AGAGGGGAGACGACGAGAGAAGTTTTGCTATTTTTAAATCATACTTAATA
GCAGAGAATTCCTTACGGGAATTTTTATATCAAACAGACAATGCTCACAG
AGTGTACTACGAAACGATAAACGTGAGAGATACAGTCTGATACAACATCA
ACTCTTAAGGTCATTAAAAGTCTTAATGGATTTTCTAGTGCCCTCTAAGT
ATGTCTCTCCCTTGGTATATACAAAATCAAAGTTTAATAAAGTTTTAAAA
ATTAAAATCGTAGTTGTTTGACCTAGCAGATTTTATGATGAAAGGCTCTT
TCTTTCGTTCAAAACCTTACATTTTATTTTCTTGGATCTAGAGCAGAAAT
TGATTGAAGTCGTATCAACTTAATTTTATTACCCTTGATCTATCTAGGAC
ATGTTAAATACGCAATGTGGATATGGTGTCAACAAAGCTTCAATGCCGGT
AAACAAATTTGTTTCATCTATTACAACTCTCGTTATTATTCTTCATCTCA
AATGTTCCTGGGTAGTTTTCTTAATTATTTGGGTTCTCTCAACAATCGTC
ATTGTCCTTTGCTCGAACCCTGTTATTTTGGTACATTGTCGAAAGATCTG
ATATCATCTTATTATTTTGCCCGTGTTTACAATTTTACCACATCAAACAG
GCTTCAATGAGGTTCAAGCGGATATATACGGACGGATGTGTGGATGGGAT
CACCGGATGGTTTTATGAACATATACAAGTTGTTGGAGGTTTAGCTGTCG
GAGGAGCCGTCATGCAGGTCAGTGCTATTTGTTATTTCTTCTCTTCTATG
AATAGACCTTTTTTACTGCATCTCCTTCATAGATCAATAATGTAATTAAA
TTTGTTTTATTGATTTTTGGACCTACTTCGGAGGTCTTTTGATTTAATCT
TCGTTCGTTCGTTTGTCCGCGCTCGTTCTTCTGTTTGTCCGTTCGTTTGT
TCGTCCGTCGTTCTGATACTAGTTTTTCTGGAGCTTGGTTCATTAGGTTT
TTTTTATGCACATAGATGCGAATTAGCAATACCCCAAAATATGACATAGT
CCGATTTTTGAGTAATTTTTTTTTCAGCCGAAAATGCTGGAAATATGCCC
GAATTCGCGACTTTTTCCATATATATTACTTTGTTTTTTTTGGACCTACC
CCGGTGGGGTAGAGGTCCTATAAATTAACCTGTGTTCGTTCGTCCGTTCG
TTCGTCTGTTACAAACTTTTCTCAGGATTTAATCATAGAAATCCTTTGAT
TTTTGGTACAAAGGTGCAAAATAGTGGTGGGAAAAATGTGACGGAGTCCG
GTTTTCAAAAAAAATTGGGGGGCAAATTTGGGCCAAAAAACGGATAAAAA
ACGGGTTTTTTGGACTTTGAAAAATTGAATCATTAATTTTTTCAAAATGA
TTTTTTGTATGAAAGTAGGGTACCATCAAAGGTAAAAGATGGCTCAAGAA
GATTTTTGCAAAAAATTTTGTTGGCTCAAATAAAACGCATGTTTATCTAT
AAGAATCACTATTAATAAGCATACATCAATGTTCTTAGTCAAATTACTCA
ATTTTTTTTATGAGATGGACAAATCCGACATTTCTTTATAAGCACATTAT
CAATTACTTAGGTATTAGCTTTTCTCGAGATTGGTTCTTTCAATCTTTAT
GATTTTTCGCACAAAGATGCATAATCATAAACCCTCGAATGTGACAGAGC
CCGATTTTCAAAAAAAAAGATTTTGGGCAAATTTGGGCCAAAAAACGGCT
AAAAAACGGATTTTTTGGATCATTAATTTTTTCTGATTTTTTGTTTGAAA
GTAGGGTACCATCATAGGTAAAAGATGGCTCAAGAAGATTTTCGCAAAAA
ATGCATGTTTATCTATAAGAATCACTATTAATAAGCATACATCAATGTTC
TTAGTCAAATTACTCAATAGTTTTTATGAGATAGATGTTTTTTTTTGCTC
ACGAAGTCTTGAATATATGATGCATAACTATAAACCCCCGAATGTGACGG
AGCTCGATTTTTGGGAAAAAATTTGTTGGGTAAATTTCAGCTAAAAAAAC
GGCTAAAAAAAGGATTTTTTGGACTTATTGGAATTATTGGATCATTGCTT
TTTCCTGATTTTTTGCATGAAAGTAGTTAAAAGATGGCTTAAGCTGATTT
TTGTAGAAAAAAGAATTTTTCAGCTCAAAAAACGCATCTTTATCTATAAG
AATCACTATCAATAAGCATACATCTATGTTCTTAGCCAAATTACTGAATT
TTTTGATGAGATTGATATTTTTTTTTTTGCTCACGAAGTCTTGAATATAA
AAAAATATTTCAAGAGCATCAATAAAACTGATTTTTACACCCGGAACTTT
CTGAAAATTGCCGGAACAGCTGATTTTTTGCAGAAAGCGGTGGCTTTTTT
ATACTATAGTTAAATAAGCCCGAGTTTATAGGGATGAAATAGAATAAACT
TTGCAATAGTCTAGGTGCAGAAATTGTAGTCTCTTAGGCTAACTGTTTAT
TTTTACNACTATAGTTAAATAAGCTCGAGTTTATAGGGATGAAATAGAAT
AAACTTTGCAATAGTCTAGGTGCAGAAATTGTAGTCTCTTAGGCTAACTG
TTTATTTTTACAGATCATTGTCATTGCGTTTGCTTCTTCAATGATCGCTG
ATGTTCGTCGACAGAAAGCTAAATGGGAGACGCCAAGGAATCAATTCAAT
GAACCATTATATCCTCTCAATATGTAAAGGTATTCATTACTGAAAACGAT
GAAGAGTAAAGGTATTTTGAATTTCTTTTTCGGTTGAAAAAAAGTTTTTC
CTTTATGTTCACTTTACATGGTTACCAAAGATTTTTGCGTATAATGCTGC
AATAAAAAGAAATCGCAGGGGATGCGTGTTGTTAGTTTTTTTTGGTTGAG
GGTCCAAATATAACAAAAATTTGGAGTGCCAAGGAGATAAACATCAAACA
GATCACCGTTCTGTAAATTCTCTCAAACATGAAGTTTAAATTATTTTTCA
AATCAAGAACTCGATGATAAATGAGAAAAGCTGGCGTATTCTTACAGTTA
TTGAACATTTTTAAAATGACTTTCATTTGGTTAAATTCGCTGGATTTTGT
TGTATATTCAAACAAATCAGTTTACTGGTTATCATTTTTTGGTTTCGCAC
AAACTGCACTAACTAAAGAAATTAACCATCGAAGTGGAATGAGTGAACTT
GACATTGTAGTTGTGTTAATTCTTCCTGTTAATAGGTCATTCCCACGCCC
ATGTTTCGAGTCTAACTTATTTAGATTAGCCTGGGACTGGTCACCATTAG
TGAGTTTAGCCAGGGGGGGGGTCAACATTTATAATACCAACCCATAGCCC
AAAAACCTGACTTTTGACCTTTTGAGCTAAGTTAACACCACCACCCCAAA
ATTGGTATCGA

Coding sequence (CDS) from alignment at scaffold_18:79834..87794-

>TCONS_00050613 ID=TCONS_00050613|Name=TCONS_00050613|organism=Clytia hemisphaerica|type=CDS|length=6672bp|location=Sequence derived from alignment at scaffold_18:79834..87794- (Clytia hemisphaerica)
ATCATTGTCATTGCGTTTGCTTCTTCAATGATCGCTGATGTTCGTCGACA
GAAAGCTAAATGGGAGACGCCAAGGAATCAATTCAATGAACCATTATATC
CTCTCAATATGTAAGCTTCAATGAGGTTCAAGCGGATATATACGGACGGA
TGTGTGGATGGGATCACCGGATGGTTTTATGAACATATACAAGTTGTTGG
AGGTTTAGCTGTCGGAGGAGCCGTCATGCAGGACATGTTAAATACGCAAT
GTGGATATGGTGTCAACAAAGCTTCAATGCCGTTCAAATGCTGTGGTTTG
GATAGCTACCAAGATTGGCAGCAAAATGCTTACTTCAATTGTACGCAGAT
TGGACCAGAAGCTTGTTCTGTACCTTACTCCTGTTGCAAAACTGTGAAAG
AACTGGTCAAGACGAAGTTACATGACACCATCGTCCACTATCGAGACAAT
GCAAACCTTCAAAATCTCATCGATTTTTCACAAGAAACTTTTACGATTTC
ATTATCGATCATTTTCTTCACTCAACTTGCTGGTGGAATCATTGGTTTTG
TCTTCAGAGCTAAGTTACTTGGTGGTTTCCTTTTGGGAGTTGGACTATGG
GCTCGCGTTGTATACGCACAAGAAAATGAATCTCTTGGCTTATTCGGTGG
TTGGCATTTAGATCCAGCTGTGCTTTTCATTATCGTGGGTGTGATCATGT
TTTTATTGGGGTTCTGTGGATGTATTGGTGCTTTGCGTGAGAATATCTGC
TTGCTCAAATTCATGTTAGAAAGAGACACAGAAGTCAGCATTTGCGTCAA
ATACCTTCTGTTCTTCTTCAATGTTTTCTTCTGGATCATTGTCATTGCGT
TTGCTTCTTCAATGATCGCTGATGTTCGTCGACAGAAAGCTAAATGGGAG
ACGCCAAGGAATCAATTCAATGAACCATTATATCCTCTCAATATGTAAGC
TTCAATGAGGTTCAAGCGGATATATACGGACGGATGTGTGGATGGGATCA
CCGGATGGTTTTATGAACATATACAAGTTGTTGGAGGTTTAGCTGTCGGA
GGAGCCGTCATGCAGGACATGTTAAATACGCAATGTGGATATGGTGTCAA
CAAAGCTTCAATGCCGTTCAAATGCTGTGGTTTGGATAGCTACCAAGATT
GGCAGCAAAATGCTTACTTCAATTGTACGCAGATTGGACCAGAAGCTTGT
TCTGTACCTTACTCCTGTTGCAAAACTGTGAAAGAACTGGTCAAGACGAA
GTTACATGACACCATCGTCCACTATCGAGACAATGCAAACCTTCAAAATC
TCATCGATTTTTCACAAGAAACTTTTACGATTTCATTATCGATCATTTTC
TTCACTCAACTTGCTGGTGGAATCATTGGTTTTGTCTTCAGAGCTAAGTT
ACTTGGTGGTTTCCTTTTGGGAGTTGGACTATGGGCTCGCGTTGTATACG
CACAAGAAAATGAATCTCTTGGCTTATTCGGTGGTTGGCATTTAGATCCA
GCTGTGCTTTTCATTATCGTGGGTGTGATCATGTTTTTATTGGGGTTCTG
TGGATGTATTGGTGCTTTGCGTGAGAATATCTGCTTGCTCAAATTCATGT
TAGAAAGAGACACAGAAGTCAGCATTTGCGTCAAATACCTTCTGTTCTTC
TTCAATGTTTTCTTCTGGATCATTGTCATTGCGTTTGCTTCTTCAATGAT
CGCTGATGTTCGTCGACAGAAAGCTAAATGGGAGACGCCAAGGAATCAAT
TCAATGAACCATTATATCCTCTCAATATGTAAGCTTCAATGAGGTTCAAG
CGGATATATACGGACGGATGTGTGGATGGGATCACCGGATGGTTTTATGA
ACATATACAAGTTGTTGGAGGTTTAGCTGTCGGAGGAGCCGTCATGCAGG
ACATGTTAAATACGCAATGTGGATATGGTGTCAACAAAGCTTCAATGCCG
TTCAAATGCTGTGGTTTGGATAGCTACCAAGATTGGCAGCAAAATGCTTA
CTTCAATTGTACGCAGATTGGACCAGAAGCTTGTTCTGTACCTTACTCCT
GTTGCAAAACTGTGAAAGAACTGGTCAAGACGAAGTTACATGACACCATC
GTCCACTATCGAGACAATGCAAACCTTCAAAATCTCATCGATTTTTCACA
AGAAACTTTTACGATTTCATTATCGATCATTTTCTTCACTCAACTTGCTG
GTGGAATCATTGGTTTTGTCTTCAGAGCTAAGTTACTTGGTGGTTTCCTT
TTGGGAGTTGGACTATGGGCTCGCGTTGTATACGCACAAGAAAATGAATC
TCTTGGCTTATTCGGTGGTTGGCATTTAGATCCAGCTGTGCTTTTCATTA
TCGTGGGTGTGATCATGTTTTTATTGGGGTTCTGTGGATGTATTGGTGCT
TTGCGTGAGAATATCTGCTTGCTCAAATTCATGTTAGAAAGAGACACAGA
AGTCAGCATTTGCGTCAAATACCTTCTGTTCTTCTTCAATGTTTTCTTCT
GGATCATTGTCATTGCGTTTGCTTCTTCAATGATCGCTGATGTTCGTCGA
CAGAAAGCTAAATGGGAGACGCCAAGGAATCAATTCAATGAACCATTATA
TCCTCTCAATATGTAAGCTTCAATGAGGTTCAAGCGGATATATACGGACG
GATGTGTGGATGGGATCACCGGATGGTTTTATGAACATATACAAGTTGTT
GGAGGTTTAGCTGTCGGAGGAGCCGTCATGCAGGACATGTTAAATACGCA
ATGTGGATATGGTGTCAACAAAGCTTCAATGCCGTTCAAATGCTGTGGTT
TGGATAGCTACCAAGATTGGCAGCAAAATGCTTACTTCAATTGTACGCAG
ATTGGACCAGAAGCTTGTTCTGTACCTTACTCCTGTTGCAAAACTGTGAA
AGAACTGGTCAAGACGAAGTTACATGACACCATCGTCCACTATCGAGACA
ATGCAAACCTTCAAAATCTCATCGATTTTTCACAAGAAACTTTTACGATT
TCATTATCGATCATTTTCTTCACTCAACTTGCTGGTGGAATCATTGGTTT
TGTCTTCAGAGCTAAGTTACTTGGTGGTTTCCTTTTGGGAGTTGGACTAT
GGGCTCGCGTTGTATACGCACAAGAAAATGAATCTCTTGGCTTATTCGGT
GGTTGGCATTTAGATCCAGCTGTGCTTTTCATTATCGTGGGTGTGATCAT
GTTTTTATTGGGGTTCTGTGGATGTATTGGTGCTTTGCGTGAGAATATCT
GCTTGCTCAAATTCATGTTAGAAAGAGACACAGAAGTCAGCATTTGCGTC
AAATACCTTCTGTTCTTCTTCAATGTTTTCTTCTGGATCATTGTCATTGC
GTTTGCTTCTTCAATGATCGCTGATGTTCGTCGACAGAAAGCTAAATGGG
AGACGCCAAGGAATCAATTCAATGAACCATTATATCCTCTCAATATGTAA
GCTTCAATGAGGTTCAAGCGGATATATACGGACGGATGTGTGGATGGGAT
CACCGGATGGTTTTATGAACATATACAAGTTGTTGGAGGTTTAGCTGTCG
GAGGAGCCGTCATGCAGGACATGTTAAATACGCAATGTGGATATGGTGTC
AACAAAGCTTCAATGCCGTTCAAATGCTGTGGTTTGGATAGCTACCAAGA
TTGGCAGCAAAATGCTTACTTCAATTGTACGCAGATTGGACCAGAAGCTT
GTTCTGTACCTTACTCCTGTTGCAAAACTGTGAAAGAACTGGTCAAGACG
AAGTTACATGACACCATCGTCCACTATCGAGACAATGCAAACCTTCAAAA
TCTCATCGATTTTTCACAAGAAACTTTTACGATTTCATTATCGATCATTT
TCTTCACTCAACTTGCTGGTGGAATCATTGGTTTTGTCTTCAGAGCTAAG
TTACTTGGTGGTTTCCTTTTGGGAGTTGGACTATGGGCTCGCGTTGTATA
CGCACAAGAAAATGAATCTCTTGGCTTATTCGGTGGTTGGCATTTAGATC
CAGCTGTGCTTTTCATTATCGTGGGTGTGATCATGTTTTTATTGGGGTTC
TGTGGATGTATTGGTGCTTTGCGTGAGAATATCTGCTTGCTCAAATTCAT
GTTAGAAAGAGACACAGAAGTCAGCATTTGCGTCAAATACCTTCTGTTCT
TCTTCAATGTTTTCTTCTGGATCATTGTCATTGCGTTTGCTTCTTCAATG
ATCGCTGATGTTCGTCGACAGAAAGCTAAATGGGAGACGCCAAGGAATCA
ATTCAATGAACCATTATATCCTCTCAATATGTAAGCTTCAATGAGGTTCA
AGCGGATATATACGGACGGATGTGTGGATGGGATCACCGGATGGTTTTAT
GAACATATACAAGTTGTTGGAGGTTTAGCTGTCGGAGGAGCCGTCATGCA
GGACATGTTAAATACGCAATGTGGATATGGTGTCAACAAAGCTTCAATGC
CGTTCAAATGCTGTGGTTTGGATAGCTACCAAGATTGGCAGCAAAATGCT
TACTTCAATTGTACGCAGATTGGACCAGAAGCTTGTTCTGTACCTTACTC
CTGTTGCAAAACTGTGAAAGAACTGGTCAAGACGAAGTTACATGACACCA
TCGTCCACTATCGAGACAATGCAAACCTTCAAAATCTCATCGATTTTTCA
CAAGAAACTTTTACGATTTCATTATCGATCATTTTCTTCACTCAACTTGC
TGGTGGAATCATTGGTTTTGTCTTCAGAGCTAAGTTACTTGGTGGTTTCC
TTTTGGGAGTTGGACTATGGGCTCGCGTTGTATACGCACAAGAAAATGAA
TCTCTTGGCTTATTCGGTGGTTGGCATTTAGATCCAGCTGTGCTTTTCAT
TATCGTGGGTGTGATCATGTTTTTATTGGGGTTCTGTGGATGTATTGGTG
CTTTGCGTGAGAATATCTGCTTGCTCAAATTCATGTTAGAAAGAGACACA
GAAGTCAGCATTTGCGTCAAATACCTTCTGTTCTTCTTCAATGTTTTCTT
CTGGATCATTGTCATTGCGTTTGCTTCTTCAATGATCGCTGATGTTCGTC
GACAGAAAGCTAAATGGGAGACGCCAAGGAATCAATTCAATGAACCATTA
TATCCTCTCAATATGTAAGCTTCAATGAGGTTCAAGCGGATATATACGGA
CGGATGTGTGGATGGGATCACCGGATGGTTTTATGAACATATACAAGTTG
TTGGAGGTTTAGCTGTCGGAGGAGCCGTCATGCAGGACATGTTAAATACG
CAATGTGGATATGGTGTCAACAAAGCTTCAATGCCGTTCAAATGCTGTGG
TTTGGATAGCTACCAAGATTGGCAGCAAAATGCTTACTTCAATTGTACGC
AGATTGGACCAGAAGCTTGTTCTGTACCTTACTCCTGTTGCAAAACTGTG
AAAGAACTGGTCAAGACGAAGTTACATGACACCATCGTCCACTATCGAGA
CAATGCAAACCTTCAAAATCTCATCGATTTTTCACAAGAAACTTTTACGA
TTTCATTATCGATCATTTTCTTCACTCAACTTGCTGGTGGAATCATTGGT
TTTGTCTTCAGAGCTAAGTTACTTGGTGGTTTCCTTTTGGGAGTTGGACT
ATGGGCTCGCGTTGTATACGCACAAGAAAATGAATCTCTTGGCTTATTCG
GTGGTTGGCATTTAGATCCAGCTGTGCTTTTCATTATCGTGGGTGTGATC
ATGTTTTTATTGGGGTTCTGTGGATGTATTGGTGCTTTGCGTGAGAATAT
CTGCTTGCTCAAATTCATGTTAGAAAGAGACACAGAAGTCAGCATTTGCG
TCAAATACCTTCTGTTCTTCTTCAATGTTTTCTTCTGGATCATTGTCATT
GCGTTTGCTTCTTCAATGATCGCTGATGTTCGTCGACAGAAAGCTAAATG
GGAGACGCCAAGGAATCAATTCAATGAACCATTATATCCTCTCAATATGT
AAGCTTCAATGAGGTTCAAGCGGATATATACGGACGGATGTGTGGATGGG
ATCACCGGATGGTTTTATGAACATATACAAGTTGTTGGAGGTTTAGCTGT
CGGAGGAGCCGTCATGCAGGACATGTTAAATACGCAATGTGGATATGGTG
TCAACAAAGCTTCAATGCCGTTCAAATGCTGTGGTTTGGATAGCTACCAA
GATTGGCAGCAAAATGCTTACTTCAATTGTACGCAGATTGGACCAGAAGC
TTGTTCTGTACCTTACTCCTGTTGCAAAACTGTGAAAGAACTGGTCAAGA
CGAAGTTACATGACACCATCGTCCACTATCGAGACAATGCAAACCTTCAA
AATCTCATCGATTTTTCACAAGAAACTTTTACGATTTCATTATCGATCAT
TTTCTTCACTCAACTTGCTGGTGGAATCATTGGTTTTGTCTTCAGAGCTA
AGTTACTTGGTGGTTTCCTTTTGGGAGTTGGACTATGGGCTCGCGTTGTA
TACGCACAAGAAAATGAATCTCTTGGCTTATTCGGTGGTTGGCATTTAGA
TCCAGCTGTGCTTTTCATTATCGTGGGTGTGATCATGTTTTTATTGGGGT
TCTGTGGATGTATTGGTGCTTTGCGTGAGAATATCTGCTTGCTCAAATTC
ATGTTAGAAAGAGACACAGAAGTCAGCATTTGCGTCAAATACCTTCTGTT
CTTCTTCAATGTTTTCTTCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032059XLOC_032059Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050613-exon-scaffold_18-1575043694:87639..87794TCONS_00050613-exon-scaffold_18-1575043694:87639..87794Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1575043694:87138..87335TCONS_00050613-exon-scaffold_18-1575043694:87138..87335Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1575043694:86680..86754TCONS_00050613-exon-scaffold_18-1575043694:86680..86754Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1575043694:86339..86434TCONS_00050613-exon-scaffold_18-1575043694:86339..86434Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1575043694:85850..85960TCONS_00050613-exon-scaffold_18-1575043694:85850..85960Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1575043694:82797..82847TCONS_00050613-exon-scaffold_18-1575043694:82797..82847Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1575043694:82478..82594TCONS_00050613-exon-scaffold_18-1575043694:82478..82594Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1575043694:79834..80631TCONS_00050613-exon-scaffold_18-1575043694:79834..80631Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1510915933:87639..87794TCONS_00050613-exon-scaffold_18-1510915933:87639..87794Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1510915933:87138..87335TCONS_00050613-exon-scaffold_18-1510915933:87138..87335Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1510915933:86680..86754TCONS_00050613-exon-scaffold_18-1510915933:86680..86754Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1510915933:86339..86434TCONS_00050613-exon-scaffold_18-1510915933:86339..86434Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1510915933:85850..85960TCONS_00050613-exon-scaffold_18-1510915933:85850..85960Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1510915933:82797..82847TCONS_00050613-exon-scaffold_18-1510915933:82797..82847Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1510915933:82478..82594TCONS_00050613-exon-scaffold_18-1510915933:82478..82594Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1510915933:79834..80631TCONS_00050613-exon-scaffold_18-1510915933:79834..80631Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1491911889:87639..87794TCONS_00050613-exon-scaffold_18-1491911889:87639..87794Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1491911889:87138..87335TCONS_00050613-exon-scaffold_18-1491911889:87138..87335Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1491911889:86680..86754TCONS_00050613-exon-scaffold_18-1491911889:86680..86754Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1491911889:86339..86434TCONS_00050613-exon-scaffold_18-1491911889:86339..86434Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1491911889:85850..85960TCONS_00050613-exon-scaffold_18-1491911889:85850..85960Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1491911889:82797..82847TCONS_00050613-exon-scaffold_18-1491911889:82797..82847Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1491911889:82478..82594TCONS_00050613-exon-scaffold_18-1491911889:82478..82594Clytia hemisphaericaexon
TCONS_00050613-exon-scaffold_18-1491911889:79834..80631TCONS_00050613-exon-scaffold_18-1491911889:79834..80631Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050613-proteinTCONS_00050613-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:79834..87794 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.90197	8.9939	11.1851	11.5766	22.9751	17.2778	22.4194	23.3459	27.6881	23.0842	22.1428	25.1981	18.6635	19.902	13.4245	13.3877	18.5925	23.5626	19.9556	24.1483	26.5619	24.7735	15.1621	17.8567	24.6802	24.6511	12.7796	9.02371	7.90934	7.23465
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR008952Tetraspanin_EC2
IPR018499Tetraspanin/Peripherin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00050613 vs. Swiss-Prot (Human)
Match: TSN33 (Tetraspanin-33 OS=Homo sapiens GN=TSPAN33 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 2.447e-50
Identity = 101/209 (48.33%), Postives = 144/209 (68.90%), Query Frame = 1 
Query:  250 LDPAVLFIIVGVIMFLLGFCGCIGALRENICXXXXXXXXXXXXXXXQLAGGIIGFVFRAKVKELVKTKLHDTIVHYRDNANLQNLIDFSQETFKCCGLDSYQDWQQNAYFNCTQIGP--EACSVPYSCC----KTDMLNTQCGYGVNKAS-MPASMRFKRIYTDGCVDGITGWFYEHIQXXXXXXXXXXXMQIIVIAFASSMIADVRRQ 855
            +DPA+L I+VGV+MFLL FCGCIG+LRENICLL+ F++ L+ +F  QLA GI+GFVF  K +  V   +++ IVHYRD+ +LQNLIDF Q+ F CCG  SY+DW QN YFNC++  P  E CSVPYSCC       ++NT CG G+     + AS   K IYT+GC+D +  W + ++ ++GG+A+G A+ Q++ I  +  ++  ++ Q
Sbjct:   62 VDPAILLIVVGVLMFLLTFCGCIGSLRENICLLQTFSLCLTAVFLLQLAAGILGFVFSDKARGKVSEIINNAIVHYRDDLDLQNLIDFGQKKFSCCGGISYKDWSQNMYFNCSEDNPSRERCSVPYSCCLPTPDQAVINTMCGQGMQAFDYLEAS---KVIYTNGCIDKLVNWIHSNLFLLGGVALGLAIPQLVGILLSQILVNQIKDQ 267
The following BLAST results are available for this feature:
BLAST of TCONS_00050613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN332.447e-5048.33Tetraspanin-33 OS=Homo sapiens GN=TSPAN33 PE=1 SV=... [more]
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