TCONS_00050616 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050616
Unique NameTCONS_00050616
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050616 ID=TCONS_00050616|Name=TCONS_00050616|organism=Clytia hemisphaerica|type=transcript|length=446bp
CGACGAAGATAAAGCTTtacaagaaaaaagaaagactACAAACACAAAGG
TAACACTCCTTCATCGTAGACAACTGATTGACTGCAAGATGGGaaaaaac
aaactaaagaaAAGAACGAAGAAACAACAAAAGTATTACAAGCATCTTGC
AAGACAACACCGAAAGAGATGTGACTCGAATGTGGATCGATGAATAGTGG
TTTTAATAGAGGAACAAAATGCTCAACCAGACGTGAACGAATCGATCGTT
ATTAACAATGACAAGGATGACGGCGATGACAGGATCTCACTCCATGCCTC
GGACAGTGATTTTCATTGAAGTCTTaggtttttataatttttaatttttg
taatatttttttttgtagtgttcatctatttaaattatatatatatattt
tttttcatttattttttttgttatgcTAGAGtttataaaatttacc
Run BLAST on NCBI

transcript from alignment at scaffold_18:153514..158341-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050616 ID=TCONS_00050616|Name=TCONS_00050616|organism=Clytia hemisphaerica|type=transcript|length=4828bp|location=Sequence derived from alignment at scaffold_18:153514..158341- (Clytia hemisphaerica)
CGACGAAGATAAAGCTTTACAAGAAAAAAGAAAGACTACAAACACAAAGG
TAACACTCCTTCATCGTAGACAACTGATTGACTGCAAGGTAAGTTAACCG
ACAATTACAGTCTTTTACCTGTAACACAGGTGACCACCAAACAACGTTTG
GTTCTGTTTTTCTCTCTATATCTATCCAAAACTATAAGTCTTTCACCTAA
TAGGTGAACTACCAGACAATTTGTTTGGTTCTTTCAAGGTGTGTGCATGC
ATTACTCTAAGTTATTCAGGCTTTCACCAAGTACGGTGAACCACCAGACA
ATTTATTTGGTCTGATAAACACTTGCCTCAGCCTTTCACCAATCCAATTG
GTGAACCTCCATCCTTACAAAGGTTGGTCTGTTGGTAATATGAGTACTAA
TGCCACAGCCTCATTATTCTTCGACCCTGACTGCCACCCAGACAATACAC
TGAAGGCTTTTCTTGAATTCACCCAAGACTATGAATTACGTTACGCAGCA
ATGTATCCAGATCCTCCAAAGGTATCCTTGGACTCTGCTCTTCAAAGGTG
GAAACTTGGAAACGACAATAAAAACCCTACTATGGCAGAATATGATGATA
TAGTCGACCAATGGAAAGCCAAAGACATGGTTGCAAAATTCTTGGGCATC
TATTCTTCAAGGCGCTTGGTTAGTGACTGGACAATGGCCATGCCAACTGA
AAAATCAAGAAAGGATGCAACGTGGAACCAGTTTAAAGACACAATGGACA
GTTACTACAAGCCTACCGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAATCAACATCCTGC
TTTTTCTGTGGAATAACAGGCAAGAAACAAGATATCGTCGTACATGCTAA
ACAATGCCCAGCAAGAGCATCTGTTTGTAGCAAATGCAACAAAACTGGCC
ACTATGCAAAAGTATGTAAAATTAGACCAGCAAGGAAGGAAATGGAAATC
AATGAGGTAGAAGAATCGACTTCAACTGATGAGGAATCTCAAGTGTATAA
TGTAAATCTATTCAGAATCAACAATTCAAAGAATAGGACATATACAGAAG
ATTTTAGAACAAATATCCTCATTAACAACCATCTAGACACTGTATTAGCC
GATACAGGGGCAGGAATCTCAGTGTGTAGCATGGAAACAGCTAAAAAATG
GAATATCCTAGACAGAATGAGTAAAACAAATCTCAGAATAAAGCCATACA
AAAGCAAACCGATACCAGCAATTGGAGTTAGTCGATGTAGTGTTTCATTC
GGTGACAGGACGGTTCCACTTCAATGGTACATCATAAAAGAGCCATGTGA
ATCCATACTTTCCGGTGCGATGGCAACCCAATTGAATATTGTAAGCTTCA
ACAACCAACCTGAAGTACTTACACCTGTCAGAATGATCCATCTCACAGAT
CATTTACTGAAAGAAAATCTACAAGACATCATTACTAAGAGGACACCAAT
TTTCAATGGAATCGGTAAGTTAAAAAACTATCTTGTCAAGCTTCCTGCCA
ATCCAAACATTAAGGCGGTTGCAGAACCTCCTAGGAGAATTCCTTATCAC
CTTAAAAGTCGTGTGGAGGAGGTCATAAATGAAATGAAAACCCAAGATGT
TATTGAAGAACTCCCTGCAGGTCAACAGACCCCATGGATTTCCAATGTAG
TGATAGCCCCTAAAGACGATGGCAACATTCGCATAACCCTTGATGCCAAG
AACCTAAATAAGGCGCTTCTTTCATCAAACTTCCCCCATTCCACGTCCAG
AAGATATTAAGGCCCAGTTATCTGGCAAAAAGATCTTTTCCAAAATTGAT
TTAAAATCGGCGTTCTAGCAATTAGAAATAGAAGAAAATGCCAGGAATCT
TACAGTCTTTCATTTAAATGGCAAGCTCTATAGGTATAAGAGATTAGTCA
TGGGGTTAAAGCCGTTACAAGGGGAGCTCAATGCAGCTCTTCAGCCTCTG
TTCTCAAATCTTCCTGAGGTTCACGTCATACTCGATGATATTATAATAGC
CACCGATGACGAAAGGTCGCATGTCCATATAATTGAGAAGACTCTATCCA
TAATGCAAGAAAAAGGGTCACACTCAACAAGGATAAATGCAAATTTGGGG
CAAAAGAAATCAAATTCTGGGGAATGGTCATTTCAGCAGCTGGTATAAGA
CCAGATCCTGAAAAGGTTGAAGCTTTGAACCACCTCACCACTCCTAAGAA
CAAAGAGGAGTTAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAGGGAGCTTACAAAGAAAGGGGTAAGATTTAA
ATGGCAAAAGAAACACAATGATGCATTCTACTCCCTTATAGAAGCATTCC
GTAAGGACGTACTCCTGCGTTATTTTGACCCAAATGCTAGAACGTTTATT
GTTGTTGATGGTCACAAGACGGGGCTAGGCGCAATTCTAGCACAAGGTCC
GTCTTTAGAAGAAGCGAAACCAGTTGCTCTAGCCTCAAGGACAACTAATG
ATTCTGAGAAACACTGTCCTCAATTGGATTTAGAAGCTGCTAGCCTTGAC
TTTGGACTCAGACGATTCCGTGAATATGTTGTAGGTTTGCCTGCCCTTAT
CAAGGTGATCACTGATCACAAGCCCTTGGTACACATATTCAATGGAAAGC
GTTCTGGTTCCATTAGAACAAAGCGAATCAAATTGAATCATCATTGTTGA
ATACCAGAAAGGGTCTCTTAATCAAGTAGACTACATGAGTCGTCATGGGA
GAAAACTTTCCAGTCTTCCAATTGGCCAGAGAGAAGAATGCAATGACCTC
AATAATCTTCTATACGCACTTCATATGACACAAGTCGTTGATCACATTTC
ACTAGCGAGAATCGCTCAGGAAACCGCTGATGATAAAACACTCAGTCACA
TTCAAAAATATCTCTGGAAGGGCTATCAATCAATCCCTAAGAACGTCTCC
AAAGAGGTTAAAAGATTTGGACCTGTTATGTCGGAACTAACCGTTATGGC
GAACGGAATAATACTCAAGGATGATAGAATTGTTCTTCCAGAATCACTAC
ACAAACTAGCTATTGAACTAGCACACAGGGGATCTCACCCAGGACAAAGT
GGAATTGAAAGGAGACTTAGGTTCCATTTTTTCTTCCATGGAATGTACGA
TAAGGTGAAAAGTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNACGGGCACTAGACAAAGAAAAGAAAATTCAACATGA
AGAGGTTATCAATGCCTCAAAATACCGAAAATCCTCTGATATCACGCAAG
GGGACTTGGTATTAGTTCGAAATTATACAAGGAGATCTAAATTGGATCCA
ATATTCTTACCTTCTCCTTATCAGATACATACAGGAAATAAATGCAGAAA
TGAAAAGTGTTCTCATAAGAGATTTATTCTCAACGAAAACCCTACTAAGG
CACCTAGATGATGTCAAAAAATGCCAATACTTCATTGACACCACACCACA
ACAGGAAGGACGCAAAACCACTCAGAGCAACCTGGAATTAGAAGAAGCAG
CAAAGCAGTTAATAGAGGAGGAGCACCATGGGGAGACTACCTTTCCTGAA
GCACCCTCAGTGCAAACTCCCCCACTAGTTTTCCCTCAAACAGCCCCACA
ACCCCTTCCCCCAAATGATGAACCCACTCACCCGGAAGAAAGAACCATTC
CGCAGAGGGTATCAACAAGAGTTAGAAAAGCTCGTAAACGATACATTGAA
ATATGCTAACTTTATCTTAGATGGGAAAAAACAAACTAAAGAAAAGAACG
AAGAAACAACAAAAGTATTACAAGCATCTTGCAAGACAACACCGAAAGAG
ATGTGACTCGAATGTGGATCGATGAATAGTGGTTTTAATAGAGGAACAAA
ATGCTCAACCAGACGTGAACGAATCGATCGTTATTAACAATGACAAGGAT
GACGGCGATGACAGGATCTCACTCCATGCCTCGGACAGTGATTTTCATTG
AAGTCTTAGGTTTTTATAATTTTTAATTTTTGTAATATTTTTTTTTGTAG
TGTTCATCTATTTAAATTATATATATATATTTTTTTTCATTTATTTTTTT
TGTTATGCTAGAGTTTATAAAATTTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032061XLOC_032061Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050616-exon-scaffold_18-1575043694:158254..158341TCONS_00050616-exon-scaffold_18-1575043694:158254..158341Clytia hemisphaericaexon
TCONS_00050616-exon-scaffold_18-1575043694:153514..153871TCONS_00050616-exon-scaffold_18-1575043694:153514..153871Clytia hemisphaericaexon
TCONS_00050616-exon-scaffold_18-1510915933:158254..158341TCONS_00050616-exon-scaffold_18-1510915933:158254..158341Clytia hemisphaericaexon
TCONS_00050616-exon-scaffold_18-1510915933:153514..153871TCONS_00050616-exon-scaffold_18-1510915933:153514..153871Clytia hemisphaericaexon
TCONS_00050616-exon-scaffold_18-1491911889:158254..158341TCONS_00050616-exon-scaffold_18-1491911889:158254..158341Clytia hemisphaericaexon
TCONS_00050616-exon-scaffold_18-1491911889:153514..153871TCONS_00050616-exon-scaffold_18-1491911889:153514..153871Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:153514..158341 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.00651539	6.40995	4.58165	4.34517	0	0.682462	0	0	0	0.611239	0.248775	0	0	0	0	0.832586	0	0	0	0	0.260276	0	0.482941	0	0	0.191958
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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