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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050617 ID=TCONS_00050617|Name=TCONS_00050617|organism=Clytia hemisphaerica|type=transcript|length=430bp
CCACTTGGTCATATTATTCTTGGCGACGAAGATAAAGCTTtacaagaaaa
aagaaagactACAAACACAAAGATGGGaaaaaacaaactaaagaaAAGAA
CGAAGAAACAACAAAAGTATTACAAGCATCTTGCAAGACAACACCGAAAG
AGATGTGACTCGAATGTGGATCGATGAATAGTGGTTTTAATAGAGGAACA
AAATGCTCAACCAGACGTGAACGAATCGATCGTTATTAACAATGACAAGG
ATGACGGCGATGACAGGATCTCACTCCATGCCTCGGACAGTGATTTTCAT
TGAAGTCTTaggtttttataatttttaatttttgtaatatttttttttgt
agtgttcatctatttaaattatatatatatattttttttcatttattttt
tttgttatgcTAGAGtttataaaatttacc Run BLAST on NCBI transcript from alignment at scaffold_18:153514..158364- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050617 ID=TCONS_00050617|Name=TCONS_00050617|organism=Clytia hemisphaerica|type=transcript|length=4851bp|location=Sequence derived from alignment at scaffold_18:153514..158364- (Clytia hemisphaerica)
CCACTTGGTCATATTATTCTTGGCGACGAAGATAAAGCTTTACAAGAAAA
AAGAAAGACTACAAACACAAAGGTAACACTCCTTCATCGTAGACAACTGA
TTGACTGCAAGGTAAGTTAACCGACAATTACAGTCTTTTACCTGTAACAC
AGGTGACCACCAAACAACGTTTGGTTCTGTTTTTCTCTCTATATCTATCC
AAAACTATAAGTCTTTCACCTAATAGGTGAACTACCAGACAATTTGTTTG
GTTCTTTCAAGGTGTGTGCATGCATTACTCTAAGTTATTCAGGCTTTCAC
CAAGTACGGTGAACCACCAGACAATTTATTTGGTCTGATAAACACTTGCC
TCAGCCTTTCACCAATCCAATTGGTGAACCTCCATCCTTACAAAGGTTGG
TCTGTTGGTAATATGAGTACTAATGCCACAGCCTCATTATTCTTCGACCC
TGACTGCCACCCAGACAATACACTGAAGGCTTTTCTTGAATTCACCCAAG
ACTATGAATTACGTTACGCAGCAATGTATCCAGATCCTCCAAAGGTATCC
TTGGACTCTGCTCTTCAAAGGTGGAAACTTGGAAACGACAATAAAAACCC
TACTATGGCAGAATATGATGATATAGTCGACCAATGGAAAGCCAAAGACA
TGGTTGCAAAATTCTTGGGCATCTATTCTTCAAGGCGCTTGGTTAGTGAC
TGGACAATGGCCATGCCAACTGAAAAATCAAGAAAGGATGCAACGTGGAA
CCAGTTTAAAGACACAATGGACAGTTACTACAAGCCTACCGAGTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNACCAATCAACATCCTGCTTTTTCTGTGGAATAACAGGCAAGAAA
CAAGATATCGTCGTACATGCTAAACAATGCCCAGCAAGAGCATCTGTTTG
TAGCAAATGCAACAAAACTGGCCACTATGCAAAAGTATGTAAAATTAGAC
CAGCAAGGAAGGAAATGGAAATCAATGAGGTAGAAGAATCGACTTCAACT
GATGAGGAATCTCAAGTGTATAATGTAAATCTATTCAGAATCAACAATTC
AAAGAATAGGACATATACAGAAGATTTTAGAACAAATATCCTCATTAACA
ACCATCTAGACACTGTATTAGCCGATACAGGGGCAGGAATCTCAGTGTGT
AGCATGGAAACAGCTAAAAAATGGAATATCCTAGACAGAATGAGTAAAAC
AAATCTCAGAATAAAGCCATACAAAAGCAAACCGATACCAGCAATTGGAG
TTAGTCGATGTAGTGTTTCATTCGGTGACAGGACGGTTCCACTTCAATGG
TACATCATAAAAGAGCCATGTGAATCCATACTTTCCGGTGCGATGGCAAC
CCAATTGAATATTGTAAGCTTCAACAACCAACCTGAAGTACTTACACCTG
TCAGAATGATCCATCTCACAGATCATTTACTGAAAGAAAATCTACAAGAC
ATCATTACTAAGAGGACACCAATTTTCAATGGAATCGGTAAGTTAAAAAA
CTATCTTGTCAAGCTTCCTGCCAATCCAAACATTAAGGCGGTTGCAGAAC
CTCCTAGGAGAATTCCTTATCACCTTAAAAGTCGTGTGGAGGAGGTCATA
AATGAAATGAAAACCCAAGATGTTATTGAAGAACTCCCTGCAGGTCAACA
GACCCCATGGATTTCCAATGTAGTGATAGCCCCTAAAGACGATGGCAACA
TTCGCATAACCCTTGATGCCAAGAACCTAAATAAGGCGCTTCTTTCATCA
AACTTCCCCCATTCCACGTCCAGAAGATATTAAGGCCCAGTTATCTGGCA
AAAAGATCTTTTCCAAAATTGATTTAAAATCGGCGTTCTAGCAATTAGAA
ATAGAAGAAAATGCCAGGAATCTTACAGTCTTTCATTTAAATGGCAAGCT
CTATAGGTATAAGAGATTAGTCATGGGGTTAAAGCCGTTACAAGGGGAGC
TCAATGCAGCTCTTCAGCCTCTGTTCTCAAATCTTCCTGAGGTTCACGTC
ATACTCGATGATATTATAATAGCCACCGATGACGAAAGGTCGCATGTCCA
TATAATTGAGAAGACTCTATCCATAATGCAAGAAAAAGGGTCACACTCAA
CAAGGATAAATGCAAATTTGGGGCAAAAGAAATCAAATTCTGGGGAATGG
TCATTTCAGCAGCTGGTATAAGACCAGATCCTGAAAAGGTTGAAGCTTTG
AACCACCTCACCACTCCTAAGAACAAAGAGGAGTTAATCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGAGCTT
ACAAAGAAAGGGGTAAGATTTAAATGGCAAAAGAAACACAATGATGCATT
CTACTCCCTTATAGAAGCATTCCGTAAGGACGTACTCCTGCGTTATTTTG
ACCCAAATGCTAGAACGTTTATTGTTGTTGATGGTCACAAGACGGGGCTA
GGCGCAATTCTAGCACAAGGTCCGTCTTTAGAAGAAGCGAAACCAGTTGC
TCTAGCCTCAAGGACAACTAATGATTCTGAGAAACACTGTCCTCAATTGG
ATTTAGAAGCTGCTAGCCTTGACTTTGGACTCAGACGATTCCGTGAATAT
GTTGTAGGTTTGCCTGCCCTTATCAAGGTGATCACTGATCACAAGCCCTT
GGTACACATATTCAATGGAAAGCGTTCTGGTTCCATTAGAACAAAGCGAA
TCAAATTGAATCATCATTGTTGAATACCAGAAAGGGTCTCTTAATCAAGT
AGACTACATGAGTCGTCATGGGAGAAAACTTTCCAGTCTTCCAATTGGCC
AGAGAGAAGAATGCAATGACCTCAATAATCTTCTATACGCACTTCATATG
ACACAAGTCGTTGATCACATTTCACTAGCGAGAATCGCTCAGGAAACCGC
TGATGATAAAACACTCAGTCACATTCAAAAATATCTCTGGAAGGGCTATC
AATCAATCCCTAAGAACGTCTCCAAAGAGGTTAAAAGATTTGGACCTGTT
ATGTCGGAACTAACCGTTATGGCGAACGGAATAATACTCAAGGATGATAG
AATTGTTCTTCCAGAATCACTACACAAACTAGCTATTGAACTAGCACACA
GGGGATCTCACCCAGGACAAAGTGGAATTGAAAGGAGACTTAGGTTCCAT
TTTTTCTTCCATGGAATGTACGATAAGGTGAAAAGTTTTGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGGGCACTAGAC
AAAGAAAAGAAAATTCAACATGAAGAGGTTATCAATGCCTCAAAATACCG
AAAATCCTCTGATATCACGCAAGGGGACTTGGTATTAGTTCGAAATTATA
CAAGGAGATCTAAATTGGATCCAATATTCTTACCTTCTCCTTATCAGATA
CATACAGGAAATAAATGCAGAAATGAAAAGTGTTCTCATAAGAGATTTAT
TCTCAACGAAAACCCTACTAAGGCACCTAGATGATGTCAAAAAATGCCAA
TACTTCATTGACACCACACCACAACAGGAAGGACGCAAAACCACTCAGAG
CAACCTGGAATTAGAAGAAGCAGCAAAGCAGTTAATAGAGGAGGAGCACC
ATGGGGAGACTACCTTTCCTGAAGCACCCTCAGTGCAAACTCCCCCACTA
GTTTTCCCTCAAACAGCCCCACAACCCCTTCCCCCAAATGATGAACCCAC
TCACCCGGAAGAAAGAACCATTCCGCAGAGGGTATCAACAAGAGTTAGAA
AAGCTCGTAAACGATACATTGAAATATGCTAACTTTATCTTAGATGGGAA
AAAACAAACTAAAGAAAAGAACGAAGAAACAACAAAAGTATTACAAGCAT
CTTGCAAGACAACACCGAAAGAGATGTGACTCGAATGTGGATCGATGAAT
AGTGGTTTTAATAGAGGAACAAAATGCTCAACCAGACGTGAACGAATCGA
TCGTTATTAACAATGACAAGGATGACGGCGATGACAGGATCTCACTCCAT
GCCTCGGACAGTGATTTTCATTGAAGTCTTAGGTTTTTATAATTTTTAAT
TTTTGTAATATTTTTTTTTGTAGTGTTCATCTATTTAAATTATATATATA
TATTTTTTTTCATTTATTTTTTTTGTTATGCTAGAGTTTATAAAATTTAC
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050617-exon-scaffold_18-1575043694:158293..158364 | TCONS_00050617-exon-scaffold_18-1575043694:158293..158364 | Clytia hemisphaerica | exon |
| TCONS_00050617-exon-scaffold_18-1575043694:153514..153871 | TCONS_00050617-exon-scaffold_18-1575043694:153514..153871 | Clytia hemisphaerica | exon |
| TCONS_00050617-exon-scaffold_18-1510915933:158293..158364 | TCONS_00050617-exon-scaffold_18-1510915933:158293..158364 | Clytia hemisphaerica | exon |
| TCONS_00050617-exon-scaffold_18-1510915933:153514..153871 | TCONS_00050617-exon-scaffold_18-1510915933:153514..153871 | Clytia hemisphaerica | exon |
| TCONS_00050617-exon-scaffold_18-1491911889:158293..158364 | TCONS_00050617-exon-scaffold_18-1491911889:158293..158364 | Clytia hemisphaerica | exon |
| TCONS_00050617-exon-scaffold_18-1491911889:153514..153871 | TCONS_00050617-exon-scaffold_18-1491911889:153514..153871 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:153514..158364 - |
Blast
The following BLAST results are available for this feature:
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