TCONS_00050618 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050618
Unique NameTCONS_00050618
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length823

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050618 ID=TCONS_00050618|Name=TCONS_00050618|organism=Clytia hemisphaerica|type=transcript|length=823bp
aaaatacaaagaataacatAAATAAACACCACTTGGTCATATTATTCTTG
GCGACGAAGATAAAGCTTtacaagaaaaaagaaagactACAAACACAAAG
GTAACACTCCTTCATCGTAGACAACTGATTGACTGCAAGGTAAGTTAACC
GACAATTACAGTCTTTTACCTGTAACACAGGTGACCACCAAACAACGTTT
GGTTCTGTTTTTCTCTCTATATCTATCCAAAACTATAAGTCTTTCACCTA
ATAGGTGAACTACCAGACAATTTGTTTGGTTCTTTCAAGGTGTGTGCATG
CATTACTCTAAGTTATTCAGGCTTTCACCAAGTACGGTGAACCACCAGAC
AATTTATTTGGTCTGATAAACACTTGCCTCAGCCTTTCACCAATCCAATT
GGTGAACCTCCATCCTTACAAAGGTTGGTCTGTTGGTAATATGAGTACTA
ATGCCACAGCCTCATTATTCTTCGACCCTGACTGCCACCCAGACAATACA
CTGAAGGCTTTTCTTGAATTCACCCAAGACTATGAATTACGTTACGCAGC
AATGTATCCAGATCCTCCAAAGGTATCCTTGGACTCTGCTCTTCAAAGGT
GGAAACTTGGAAACGACAATAAAAACCCTACTATGGCAGAATATGATGAT
ATAGTCGACCAATGGAAAGCCAAAGACATGGTTGCAAAATTCTTGGGCAT
CTATTCTTCAAGGCGCTTGGTTAGTGACTGGACAATGGCCATGCCAACTG
AAAAATCAAGAAAGGATGCAACGTGGAACCAGTTTAAAGACACAATGGAC
AGTTACTACAAGCCTACCGAGTN
Run BLAST on NCBI

protein sequence of TCONS_00050618-protein

>TCONS_00050618-protein ID=TCONS_00050618-protein|Name=TCONS_00050618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MSTNATASLFFDPDCHPDNTLKAFLEFTQDYELRYAAMYPDPPKVSLDSA
LQRWKLGNDNKNPTMAEYDDIVDQWKAKDMVAKFLGIYSSRRLVSDWTMA
MPTEKSRKDATWNQFKDTMDSYYKPTE
Run BLAST on NCBI

transcript from alignment at scaffold_18:157570..158392-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050618 ID=TCONS_00050618|Name=TCONS_00050618|organism=Clytia hemisphaerica|type=transcript|length=823bp|location=Sequence derived from alignment at scaffold_18:157570..158392- (Clytia hemisphaerica)
AAAATACAAAGAATAACATAAATAAACACCACTTGGTCATATTATTCTTG
GCGACGAAGATAAAGCTTTACAAGAAAAAAGAAAGACTACAAACACAAAG
GTAACACTCCTTCATCGTAGACAACTGATTGACTGCAAGGTAAGTTAACC
GACAATTACAGTCTTTTACCTGTAACACAGGTGACCACCAAACAACGTTT
GGTTCTGTTTTTCTCTCTATATCTATCCAAAACTATAAGTCTTTCACCTA
ATAGGTGAACTACCAGACAATTTGTTTGGTTCTTTCAAGGTGTGTGCATG
CATTACTCTAAGTTATTCAGGCTTTCACCAAGTACGGTGAACCACCAGAC
AATTTATTTGGTCTGATAAACACTTGCCTCAGCCTTTCACCAATCCAATT
GGTGAACCTCCATCCTTACAAAGGTTGGTCTGTTGGTAATATGAGTACTA
ATGCCACAGCCTCATTATTCTTCGACCCTGACTGCCACCCAGACAATACA
CTGAAGGCTTTTCTTGAATTCACCCAAGACTATGAATTACGTTACGCAGC
AATGTATCCAGATCCTCCAAAGGTATCCTTGGACTCTGCTCTTCAAAGGT
GGAAACTTGGAAACGACAATAAAAACCCTACTATGGCAGAATATGATGAT
ATAGTCGACCAATGGAAAGCCAAAGACATGGTTGCAAAATTCTTGGGCAT
CTATTCTTCAAGGCGCTTGGTTAGTGACTGGACAATGGCCATGCCAACTG
AAAAATCAAGAAAGGATGCAACGTGGAACCAGTTTAAAGACACAATGGAC
AGTTACTACAAGCCTACCGAGTN

Coding sequence (CDS) from alignment at scaffold_18:157570..158392-

>TCONS_00050618 ID=TCONS_00050618|Name=TCONS_00050618|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_18:157570..158392- (Clytia hemisphaerica)
ATGAGTACTAATGCCACAGCCTCATTATTCTTCGACCCTGACTGCCACCC
AGACAATACACTGAAGGCTTTTCTTGAATTCACCCAAGACTATGAATTAC
GTTACGCAGCAATGTATCCAGATCCTCCAAAGGTATCCTTGGACTCTGCT
CTTCAAAGGTGGAAACTTGGAAACGACAATAAAAACCCTACTATGGCAGA
ATATGATGATATAGTCGACCAATGGAAAGCCAAAGACATGGTTGCAAAAT
TCTTGGGCATCTATTCTTCAAGGCGCTTGGTTAGTGACTGGACAATGGCC
ATGCCAACTGAAAAATCAAGAAAGGATGCAACGTGGAACCAGTTTAAAGA
CACAATGGACAGTTACTACAAGCCTACCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032061XLOC_032061Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050618-proteinTCONS_00050618-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050618-exon-scaffold_18-1575043694:157570..158392TCONS_00050618-exon-scaffold_18-1575043694:157570..158392Clytia hemisphaericaexon
TCONS_00050618-exon-scaffold_18-1510915933:157570..158392TCONS_00050618-exon-scaffold_18-1510915933:157570..158392Clytia hemisphaericaexon
TCONS_00050618-exon-scaffold_18-1491911889:157570..158392TCONS_00050618-exon-scaffold_18-1491911889:157570..158392Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:157570..158392 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21341	0.95788	1.32785	1.47214	1.94803	1.24148	0.75336	1.50974	0.604105	0.603119	1.75621	1.56239	0.807	0.678443	0.702001	0.620856	0.954277	1.2003	1.28988	1.09267	0.837994	1.29077	0.861262	0.481854	1.97798	1.70498	0.709636	1.09923	0.833726	0.638305
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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