TCONS_00050619 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050619
Unique NameTCONS_00050619
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050619 ID=TCONS_00050619|Name=TCONS_00050619|organism=Clytia hemisphaerica|type=transcript|length=277bp
ATAGAGAAAAAACCTACAGTAAAATCTGAGACGGAATGGACAGCCAAAAT
CCATCATCACGGCAAATCACTTTCAAAGTTCAATGTGGTGAAAACCGCGA
TACCGATTTAACATTTGTCGAGGATGAAGAGACGACGGTTCTCagtatga
aatatcatttagtttGGAAACTTGACTTACCAATAGAAAACCAATGTATC
TTAAGAAAGGAATATCATCGAATTCAATGGTCACACTGTCATTTGTGAAG
CCCATGATTTCACCTTCAGGTGCTACG
Run BLAST on NCBI

transcript from alignment at scaffold_18:203221..207979-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050619 ID=TCONS_00050619|Name=TCONS_00050619|organism=Clytia hemisphaerica|type=transcript|length=4759bp|location=Sequence derived from alignment at scaffold_18:203221..207979- (Clytia hemisphaerica)
ATAGAGAAAAAACCTACAGTAAAATCTGAGACGGAATGGACAGCCAAAAT
CCATCATCACGGCAAATCACTTTCAAAGTTCAATGTGGTGAAAACCGCGA
TACCGATTTAACATTTGTCGAGGATGAAGAGACGACGGTTCTCAGTATGA
AATATCATTTAGTTTGGAAACTTGACTTACCAATAGAAAACCAATGTATC
TTAAGAAAGGTAAATCAAGATTGGATTTATTTGAGGGACAATGAAACCCT
GGTTTTCACTAGCGATATAGAGCATCCAACAGCCGAAACGGTTGCTGAGA
TACAAATCGATTTGAAATGTCTCGCCATCAAAGAACATTTATCATTATTC
CCTTTCGCTGATGACAGGAAGAAATCTTTCGTATTTCCAAAAATTCGAGT
TTTTCCGAAAAGATACACCATAGAAAACAATGTTATTGAAATAGGTTGGG
ACGAGTTTCAACGTCATCATGCGTTGTGTACACTTAAAGGATTTCAAGCA
ATGATTTGTGACAAATTTAACACAGATCCGAATGAATCTTTACTGCTTTA
TATAGAGAGCTTTAAAGAAAGATCTTTTCTCAAGGATACTGAACATTGGT
TAGAAACTCTAAATGAATATGGGGTTCGTGAGCAGGTTTTAGACGTGTAC
ATAGGAGTATTCAGTCAACCCTCAAATACAGTTCAACAACAGTCAAACAG
TTCAAACATTCTACGCCTTCCATTCATTAAGGTATGTAATACTCGAGATG
AGGAGATCACCAAATGGTATCCAGACAGCAAAAGCTGCGATACAGTGAAT
CTAATGACATTCATTCAAAATGAACTGGAAATTCCTTTACAAAACCAAGT
CCTTTATCACGCCGAAAAGAAGTTAACGCGATCAACAAATCTGACATCAT
TACTCATTACCAACGCGTATTCTATTGACATCCATGTAGCTTACAAAACT
TTCCCAAAAGCACCCGGAAAAGAGCTTTCAGAACATTCAAGATCTCACTT
TGAAGAGCTTAGATTACAAGAAGTGCGGTCAATGACTATTAAAGATTTAG
ATACAAATTGGACGATTGTTGAAAACGCATTGGTTGTCATGTTGAACCCG
TCAGCAGGATATGGAGAGATCGTACACGTTATCAGTGATAAACTTGGTGA
AAATTTCATCTACGATTTGTCCAAATCTGGGAAAACCTTATACAGAGGAC
TTGTTATCGAAGAATTGTTTTACAACGGCGGTGTATTCAGCGAGGATATT
GAACTCAAATGTTCTTTGAATTACACGAAATCCAAGCCTGGCGAAGATCA
AGACTGTGATAGGAGAATGTATGGTTTCAAGAAATTGGTCATCAAATCTT
TAACGAANGTCGAACTCGAATGTTCTTTGAATTACACGAAAGCGAAGCCT
GGTGAAGATCAAGACTGTCATATGAGAATGTATGGTTTCAAGAAATTGGT
CATCAAATCTTTAACAAAAGTCATAGAGCTTGATGTGTCAACTTTTAACA
CTTTAGACAAATTGAGAAGATTTATTGAATCTGAATGGGAAATCTCTAAA
CGGTGTCAAGTTTACATGACAAAGGATCGAAAGATTGAACCAGATTCGAA
CGAGTCTCTGCTAATGCTTTACAAGCATAGCACAACCGAAGAAGAACGAA
AACAAAACGCCTTGCATTTCAACTTGATAACACTTGAGCCTAAAAACGTC
ACAGTTTATCTCAATTGCGCTTACGGAGGGAGAATTGGGCTGCCGGAAAC
CATCGACATTTTAGAAACATCTACAGTCAAAGACCTAGAAAACAGGTTAT
CGGAAATGATGAATATTCAAATATCCGTATTCCCAAGAAACCCACCACAA
AAACATAACCACGACGAGTTCTCGCTGCCCAAAGATAGAGTTCATCTTTT
CTCACTGATTAGTACAGATGTAACCGAATCTTTGTCTTTACGTGTGTTCC
GAACTTTAAAGGCACTAGTTCATGTTAAATGTAGGAAATGTGGAAACGAC
GAGACTCTAGAAAAGCGGGTTACCGTTAAAGATAGATTAAACCTTATTCA
GGACGTGTATACAATTCAAGATGCCATGGAATTTCTAACTCGGAAATTTC
AAGAATACCGCTGTAGTTCTTATGGATTTTGCCAAAGACAGAACTTAAAG
TTGTCGAAGAAAGACAATATCTTGAATCTGACCTCCAAGTCGACGCTTGC
TGATTTGCCAGTAGATTATGTTTTGAATTTTAAAACATTTTGTAATTTAA
GGAGTTTCATGAGAGGGGCATTCAAGAAAGAGCCGGAACCATGGACGTGT
AGTTATACTAATCGGTAATGCAAAGAAAGAAAGAAAGAAAGATAAAGAAA
ACCGAAGAACATTTTCAATATTAGGAGATTTGAGGTTTTACTTATCTACG
GATTGTTGATACTACACGTTTTTCTAAACGAACAGCCAAAATTTTTGAAG
CCTTCCAATGTTCTTAACTTTTTGAGATTTAAGCCAAAAAATGTTCTTAA
CATGTTCCTATTTTCAGCATCTTTTGAGTATTTTTGTCCATTTTCCTAAG
AGTTAACAGGTGTTTTAGAGCNTTTTTTTGGTCTTAAGCCTAAAGATGTT
CTTAACATGTTCCTATTTTCAGCATCTTTTGAGTATTTTTGTCCATTTTC
CTAAGAGTTAACAGGTGTTTTAGAGCCAACAAAGTCTAAAAATGTTCTTC
ACTTGTTCTTAAGATTTTTGGCCACCGAAGCTTTTTTTGCATTTTTCATT
TATAAATTTTTGATCTGTATTTTATACACAAGTTGNCTTATATTCTTATA
TAGTTTGTTCTTATGAAAAAAAAACGTGTATTAGGTTATTTAAGATTTTA
ATTATCTACAATTGTTGATACTATTTATTTGTGAGAAAAAGAAATGCTTC
TCATGTCAGCATATTTCGCGTTTACATAAAGTTTTTTTCTTTCACTTTTG
TCGCATTCATCAGCGTTAAATAAGTTAATACATCACTTAGCATTCTTTAA
ATTTTGAAATCTGATGTCTAAAGGCTTGGGGACACAAGAAGTTTATTTTG
CGTTGGTGCAATGCAACATGCTCCATCGCACCAACCCGAAACGCTCTCTT
GTGTCTTTACCCCATTTTTCTTTCTACCAATAAAAGTGAAATCTCACTTT
TTTCGCTGGGGCAATGGGACAAAATGGATTCGAATCAATTTTGCTGCATT
GTCCCAGGGACAAAGTCTTTTGGGTATTTCCCTCACTTTGTGTCCCATGA
AACAAAAAAAGAAACCATCTTGTGTCGGTGGGATGGAGCATGTTGCATTA
AGCACCAACACGAAAAAATCTTCTCGTGTACCCAAACCTTAACAATCCAA
AGTTTTAATTTTTTATAGACATGAAAGGTGACGCCAATATAACACTTGAT
GTCTTTTATGGTTGCATTCTTGTCTAAGGAGCAAATTTCAATCTCGTTTC
CAATCTCAATATTGTATCTGATCAGTTATTTCCTTTTTTTTAATAAGAAC
TCTTTATAAGCACCCGGCTTATATATTTTATATATTCCCGCGTTCCTGTG
TCCAACGAAAGACAGACGCGTGTTAGTCTAGCATATTTCACGTTTAGATA
AAGTTTTGTCTTTCACTGTCTAATAATCAAAAGTTTTTATATTTTATAGA
CATAAAATTGAAAATCGAAAAAACAAAAACGAATCAACAAAACCAAACAC
AGCAACAGATCAAATAAAATATTGAGATTGGAAACGAGATTGAAATTTGC
TCCATAGATAAGAATGCAACCATAAAAGACATCAAGTGTTACATTGGCGT
CACCAGGCATGCATGTTCCACTGGAGACATTATTACTAATCGAACAAAAC
TTCCAAGCGTCATATCTTAGTATTCTGATTCCGAGCGTCATTCATTTTTC
CTTATTCCTTCCGACGAGTCCTTCTTACCGTATCTGTTCCAGTTGTTAGT
TATTTATATATTTTATACACACAGCATATACATTATATAACACTTTTCTT
GTAAGAAGAACCAATATTTTTGGAGATCAAGGAAATAATGTTTAAAAAAG
ATGTATAAGTCAACAGCTTTGGATAAGAATGTAACCGATGAAACAGATGA
GAACCCTTTTCTATCAAAAAATTTTCTATTCATGACAACAAAATTTTGAT
GGTTTTTTTTGCCATCCATTATCAATTAATAGAGAAAGATAGACCTTTTT
CTTATAAATTCCTCGCATTAATTAGGGAAAACTAGGTTAAAGTATTACAT
GAAAATTACTAGGCAAGTATTCAACGTCCTTGAAATTTGCACGATTTGAA
ATCAACACGAATTTTTCAGCTTTTCAAGGAAACAGCGGTGGCTGTTTTTA
ATTAAGGGGGCTTTTATTAGCACTAAATTTCTAAATTAGTGTTAATAAAA
TGACTAGTAATATTAGATTTTCGACTTCAAAAACATTACCCATTTCTTTG
GTGAGGAAGGGAAGCACCAAGTCAGGTCCACAACCAACTCTGGTACAAGC
TGCTACAAAGATTTCATAGTTCGTGAACGGATACAAAACGTTGTCTGAAG
TGAACGTGTAATCACGTTGCGTCCCAAGTCCTTTCTCTGTCACGTTATGT
AACGTGTTGACGTGATGTGTTTCTCTATCGTGAAGTTGACCACGGATACT
GACATTGTAATAAAACAACTGTCCAAACTTATATTGTTCAGGAATATCAT
CGAATTCAATGGTCACACTGTCATTTGTGAAGCCCATGATTTCACCTTCA
GGTGCTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032062XLOC_032062Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050619-exon-scaffold_18-1575043694:207771..207979TCONS_00050619-exon-scaffold_18-1575043694:207771..207979Clytia hemisphaericaexon
TCONS_00050619-exon-scaffold_18-1575043694:203221..203288TCONS_00050619-exon-scaffold_18-1575043694:203221..203288Clytia hemisphaericaexon
TCONS_00050619-exon-scaffold_18-1510915933:207771..207979TCONS_00050619-exon-scaffold_18-1510915933:207771..207979Clytia hemisphaericaexon
TCONS_00050619-exon-scaffold_18-1510915933:203221..203288TCONS_00050619-exon-scaffold_18-1510915933:203221..203288Clytia hemisphaericaexon
TCONS_00050619-exon-scaffold_18-1491911889:207771..207979TCONS_00050619-exon-scaffold_18-1491911889:207771..207979Clytia hemisphaericaexon
TCONS_00050619-exon-scaffold_18-1491911889:203221..203288TCONS_00050619-exon-scaffold_18-1491911889:203221..203288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:203221..207979 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	3.63728	3.68461	8.39719	3.70849	8.97923	1.24944	1.61994	4.16833	3.69392	5.19765	3.26956	9.24012	0	5.28772	0	1.4349	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050619 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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