TCONS_00050624 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050624
Unique NameTCONS_00050624
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length777

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050624 ID=TCONS_00050624|Name=TCONS_00050624|organism=Clytia hemisphaerica|type=transcript|length=777bp
TTCCAACCCTACCAAGGAGGTGGTAAATAACCTACAAGACTCTTCATTTA
CCACGAACTGTGATGGTGATCCATCAGATGTCAAATTCTCCAAAAATGAT
TTCTACAATCTGCCTGTAGGATGCGGCGATTTGTATATTGACCTTGAAAA
TAACTATTTAGTCAACAAGATCAAAATCAAAGGCAGGGCCAGTGCATTTC
CtactgaatttgaattatttgcTTACTTGAACAAATGGGTTAATACAGGG
CATTTCCATAAAAGCCACCCTGGCTTAGAATATTTCTACCTTGACAAACC
CAGAAGGATAAAGGAGTTGAAGGTGAAAGCTTTAAAATATCATGGTAGTG
GATTTGACTTCAAAATCGATATTATCACTTGTGAAGATGCACCAGTGGAC
AAAGAGGTGCTTCGTGAGAATCTAATCACTTCCATGCCAAGTGGATTGGC
ACAAAATCACTTCATGGAATTGGAACAAGAAACAAACGGTAGAATCACCG
TCGTTTATATTACTGGAAATAACCAATTGGGACATAATGGAGATGGCCCG
CTTATTGGCTCGAGTGATGCTAAACTGCTTGGTAGAAGCAAATCGTTTTC
TAAATTGGACAACACTGTTTTCTGTCATAACCAACGCTTCAGTATCTCGT
TCCTAGATGGTAATCATCTCTTGAATGGTTTTGTATGTGGTATGGATAGA
GTGTTTACGATGAGCGCCGATCTGTCTATTTATGTCACTCTGGAAACAGA
CCTTAGTAACCATAACCAGTACCCTTC
Run BLAST on NCBI

protein sequence of TCONS_00050624-protein

>TCONS_00050624-protein ID=TCONS_00050624-protein|Name=TCONS_00050624-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
SNPTKEVVNNLQDSSFTTNCDGDPSDVKFSKNDFYNLPVGCGDLYIDLEN
NYLVNKIKIKGRASAFPTEFELFAYLNKWVNTGHFHKSHPGLEYFYLDKP
RRIKELKVKALKYHGSGFDFKIDIITCEDAPVDKEVLRENLITSMPSGLA
QNHFMELEQETNGRITVVYITGNNQLGHNGDGPLIGSSDAKLLGRSKSFS
KLDNTVFCHNQRFSISFLDGNHLLNGFVCGMDRVFTMSADLSIYVTLETD
LSNHNQYP
Run BLAST on NCBI

transcript from alignment at scaffold_18:264010..266815-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050624 ID=TCONS_00050624|Name=TCONS_00050624|organism=Clytia hemisphaerica|type=transcript|length=2806bp|location=Sequence derived from alignment at scaffold_18:264010..266815- (Clytia hemisphaerica)
TTCCAACCCTACCAAGGAGGTGGTAAATAACCTACAAGACTCTTCATTTA
CCACGAACTGTGATGGTGATCCATCAGATGTCAAATTCTCCAAAAATGAT
TTCTACAATCTGCCTGTAGGATGCGGCGATTTGTATATTGACCTTGAAAA
TAACTATTTAGTCAACAAGATCAAAATCAAAGGCAGGGCCAGTGCATTTC
CTACTGAATTTGAATTATTTGCTTACTTGAACAAATGGGTTAATACAGGG
GTGAGTGTGTTTTAAACGTTACCTTCACTTCCATTTTATTCATCTATCGA
ATACATCTCTTTATAGGGTAAAAAATGGCTGAAAATATGTTAGCTCTTGT
AACTTAATTCTAATCATCATGACACCTCCTTCTCACAGACCCACTGGGAC
CCCTTCCCACTGGAAAAATTGGCCAAAATATCGTCCCCGGCGTAAAATTA
TACTCTAAGTTTTGTTTCCGCTGAAAACAATCAGAAATTGTAACACTGTA
AAATATTTTGCTATTTTTCCGTCCCCAGAGTTTTGTGACTTCGAAAGCAA
TGGGATTTAAATCAATCCCCATTGAGTTTTGGTCCCATATTTTAACCCCC
ACTCGATGAATAAATCCCACCGGGTCTCTGAGAAGGGGGTGTATCATGAT
ACATGATTATTGTTTCATAGCATTTCCATAAAAGCCACCCTGGCTTAGAA
TATTTCTACCTTGACAAACCCAGAAGGATAAAGGAGTTGAAGGTGAAAGC
TTTAAAATATCATGGTAGTGGATTTGACTTCAAAATCGATATTATCACTT
GTGAAGATGCACCAGGTCAGTCCTTTCTTAGTCTACACAACATACAACAT
CATATCAATCATACAACATCTATAGACACTGCTAAAGGCAGCCACTAGTA
CCCCCACCGGGAATTGCTTATTAATAGGTTAAAACATAATAGACAACTTT
CACAAAAGATGTTTATCAATAGAGATTTTCAAATAAAAGAAAGGTTTCGA
AACTCTCTATTGTTTCATTAAAACCTCAGTGCGCATGCGATTTATCCAGA
GAATTTCAATATTCCAAACAAGAGCAGTGCTCATATCCCGAAGAGTAGGA
GTTTTACGCTCGAAACGAAGGAAGATATGACGTAGCCTAGTTCTTTCCTT
AATTACTTGAAGCAGGGGGTAAACCTACTAAAGCATAGTTGGTGGGGTTG
GTATTCTTTTCTGGAAGTAACCCGGAACTTTTTAGGTTAGTGCGACCCAT
AAGTAAATTTTGAGGCTTCTCGTCATGCACTGTATGGGTCAAAAAATTTT
CTTCGGAGATTTTGGTAAAGACCTGTTCTTTAAAATTATATTTCTTTATC
TTAGTGTTTTGAAAAAATAACTGAACATAACCCCATTTTTATATGCTAAG
TAGCCTGAAGGTTGACAGGTAAAATATTTCATTTCATTACGACATGACCG
AGGAGGCGATTCTAGCAATCTTCCAGCTTTCACATTAGCTGAACAATGCA
GTCTATTAGCACATAATACTTTAACTTTAGCGGGGATTAAATTTCGCGGT
TGGGCCTATCCGCGAAATTCCAACATTTCGCGGGGACTTACTTTCGCGGG
TGGTACTATTGGGTGGCAATATTTTCACGATTTTGTAACTTTTACTGTCA
AATCATGCATGTTGGTTGTTGAAATACACATTATTTGCGCCTTTTTATGC
AGGTACACTGTGCTCATAAATGTTTTGATTCTTAAACTTCTCGTTTTCTT
CACGCAACGTATGAAACTGAGAAAATGTTTATTGCGAAAGTCCTCTATCT
TCTTCTTAAGGATTTGTAGTATTAGAAATCCTCATAGACCATTTTTTTGC
TTTAATTTATTTAACAGTGGACAAAGAGGTGCTTCGTGAGAATCTAATCA
CTTCCATGCCAAGTGGATTGGCACAAAATCACTTCATGGAATTGGAACAA
GAAACAAACGGTAGAATCACCGTCGTTTATATTACTGGAAATAACCAATT
GGGACATAATGGAGATGGCCCGCTTATTGGCTCGAGTGATGCTAAACTGC
TTGGTAGAAGCAAATCGTTTTCTAAATTGGACAACACTGTTTTCTGTCAT
AACCAACGCTTCAGTATCTCGTTCCTAGATGGTAATCATCTCTTGAATGG
TTTTGTATGTGGTATGGATAGAGTGTTTACGATGAGCGCCGATCTGTCTA
TTTATGTCACTCTGGAAACAGGTAATTATTATAATATTGTATTTTTGTTG
CTTCTCAGAGAGTTTGTATCAAAAGTACTTTACTTTGCTTTACTTTTTAA
ATATTTTCTTTTTTAGCACCTATTATAAGTCTTTACACCGTTCGAAAGAT
CTACTTTAGGCGTACAAACTTTTGCGAGCAGAAAGTTTTGCGATTTTCGC
GAATTTTAGCCATTTTCACGAAAGCAAATGTCTTTGAAATTTTCCTTATT
GATGGTAACAAGGGTTAAGTTAGATATTATGCAAAAGTCCATCAAATGTG
GTCAAACCCCTCCCTAGTACGAGGGTTAAGGCTTTTAAGCATAAAACATA
GCAAGATTAAAATCTAAGCGTAAACAAGATAGTTTGCAATAAAACAGAAG
ATAAAAGCTCGTACACACTCTGACTTGAAAGCTGTTATCGTGATTTCAGA
GAGTTTATTCCCTGGTAGGTATCTTTGTTTGATTTGCCATTATTTAACTA
ATACGGGAGAGAAGTTGTGCGTGATTTTCTAATTTTCTCAGTCTCTTAAT
CTTTCTCTTTCCATTAATTCTACCTTAGACCTTAGTAACCATAACCAGTA
CCCTTC

Coding sequence (CDS) from alignment at scaffold_18:264010..266815-

>TCONS_00050624 ID=TCONS_00050624|Name=TCONS_00050624|organism=Clytia hemisphaerica|type=CDS|length=3096bp|location=Sequence derived from alignment at scaffold_18:264010..266815- (Clytia hemisphaerica)
ACCTTAGTAACCATAACCAGTACCCTTGGACAAAGAGGTGCTTCGTGAGA
ATCTAATCACTTCCATGCCAAGTGGATTGGCACAAAATCACTTCATGGAA
TTGGAACAAGAAACAAACGGTAGAATCACCGTCGTTTATATTACTGGAAA
TAACCAATTGGGACATAATGGAGATGGCCCGCTTATTGGCTCGAGTGATG
CTAAACTGCTTGGTAGAAGCAAATCGTTTTCTAAATTGGACAACACTGTT
TTCTGTCATAACCAACGCTTCAGTATCTCGTTCCTAGATGGTAATCATCT
CTTGAATGGTTTTGTATGTGGTATGGATAGAGTGTTTACGATGAGCGCCG
ATCTGTCTATTTATGTCACTCTGGAAACAGCATTTCCATAAAAGCCACCC
TGGCTTAGAATATTTCTACCTTGACAAACCCAGAAGGATAAAGGAGTTGA
AGGTGAAAGCTTTAAAATATCATGGTAGTGGATTTGACTTCAAAATCGAT
ATTATCACTTGTGAAGATGCACCAGTCCAACCCTACCAAGGAGGTGGTAA
ATAACCTACAAGACTCTTCATTTACCACGAACTGTGATGGTGATCCATCA
GATGTCAAATTCTCCAAAAATGATTTCTACAATCTGCCTGTAGGATGCGG
CGATTTGTATATTGACCTTGAAAATAACTATTTAGTCAACAAGATCAAAA
TCAAAGGCAGGGCCAGTGCATTTCCTACTGAATTTGAATTATTTGCTTAC
TTGAACAAATGGGTTAATACAGGGACCTTAGTAACCATAACCAGTACCCT
TGGACAAAGAGGTGCTTCGTGAGAATCTAATCACTTCCATGCCAAGTGGA
TTGGCACAAAATCACTTCATGGAATTGGAACAAGAAACAAACGGTAGAAT
CACCGTCGTTTATATTACTGGAAATAACCAATTGGGACATAATGGAGATG
GCCCGCTTATTGGCTCGAGTGATGCTAAACTGCTTGGTAGAAGCAAATCG
TTTTCTAAATTGGACAACACTGTTTTCTGTCATAACCAACGCTTCAGTAT
CTCGTTCCTAGATGGTAATCATCTCTTGAATGGTTTTGTATGTGGTATGG
ATAGAGTGTTTACGATGAGCGCCGATCTGTCTATTTATGTCACTCTGGAA
ACAGCATTTCCATAAAAGCCACCCTGGCTTAGAATATTTCTACCTTGACA
AACCCAGAAGGATAAAGGAGTTGAAGGTGAAAGCTTTAAAATATCATGGT
AGTGGATTTGACTTCAAAATCGATATTATCACTTGTGAAGATGCACCAGT
CCAACCCTACCAAGGAGGTGGTAAATAACCTACAAGACTCTTCATTTACC
ACGAACTGTGATGGTGATCCATCAGATGTCAAATTCTCCAAAAATGATTT
CTACAATCTGCCTGTAGGATGCGGCGATTTGTATATTGACCTTGAAAATA
ACTATTTAGTCAACAAGATCAAAATCAAAGGCAGGGCCAGTGCATTTCCT
ACTGAATTTGAATTATTTGCTTACTTGAACAAATGGGTTAATACAGGGAC
CTTAGTAACCATAACCAGTACCCTTGGACAAAGAGGTGCTTCGTGAGAAT
CTAATCACTTCCATGCCAAGTGGATTGGCACAAAATCACTTCATGGAATT
GGAACAAGAAACAAACGGTAGAATCACCGTCGTTTATATTACTGGAAATA
ACCAATTGGGACATAATGGAGATGGCCCGCTTATTGGCTCGAGTGATGCT
AAACTGCTTGGTAGAAGCAAATCGTTTTCTAAATTGGACAACACTGTTTT
CTGTCATAACCAACGCTTCAGTATCTCGTTCCTAGATGGTAATCATCTCT
TGAATGGTTTTGTATGTGGTATGGATAGAGTGTTTACGATGAGCGCCGAT
CTGTCTATTTATGTCACTCTGGAAACAGCATTTCCATAAAAGCCACCCTG
GCTTAGAATATTTCTACCTTGACAAACCCAGAAGGATAAAGGAGTTGAAG
GTGAAAGCTTTAAAATATCATGGTAGTGGATTTGACTTCAAAATCGATAT
TATCACTTGTGAAGATGCACCAGTCCAACCCTACCAAGGAGGTGGTAAAT
AACCTACAAGACTCTTCATTTACCACGAACTGTGATGGTGATCCATCAGA
TGTCAAATTCTCCAAAAATGATTTCTACAATCTGCCTGTAGGATGCGGCG
ATTTGTATATTGACCTTGAAAATAACTATTTAGTCAACAAGATCAAAATC
AAAGGCAGGGCCAGTGCATTTCCTACTGAATTTGAATTATTTGCTTACTT
GAACAAATGGGTTAATACAGGGACCTTAGTAACCATAACCAGTACCCTTG
GACAAAGAGGTGCTTCGTGAGAATCTAATCACTTCCATGCCAAGTGGATT
GGCACAAAATCACTTCATGGAATTGGAACAAGAAACAAACGGTAGAATCA
CCGTCGTTTATATTACTGGAAATAACCAATTGGGACATAATGGAGATGGC
CCGCTTATTGGCTCGAGTGATGCTAAACTGCTTGGTAGAAGCAAATCGTT
TTCTAAATTGGACAACACTGTTTTCTGTCATAACCAACGCTTCAGTATCT
CGTTCCTAGATGGTAATCATCTCTTGAATGGTTTTGTATGTGGTATGGAT
AGAGTGTTTACGATGAGCGCCGATCTGTCTATTTATGTCACTCTGGAAAC
AGCATTTCCATAAAAGCCACCCTGGCTTAGAATATTTCTACCTTGACAAA
CCCAGAAGGATAAAGGAGTTGAAGGTGAAAGCTTTAAAATATCATGGTAG
TGGATTTGACTTCAAAATCGATATTATCACTTGTGAAGATGCACCAGTCC
AACCCTACCAAGGAGGTGGTAAATAACCTACAAGACTCTTCATTTACCAC
GAACTGTGATGGTGATCCATCAGATGTCAAATTCTCCAAAAATGATTTCT
ACAATCTGCCTGTAGGATGCGGCGATTTGTATATTGACCTTGAAAATAAC
TATTTAGTCAACAAGATCAAAATCAAAGGCAGGGCCAGTGCATTTCCTAC
TGAATTTGAATTATTTGCTTACTTGAACAAATGGGTTAATACAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032066XLOC_032066Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050624-exon-scaffold_18-1575043694:266566..266815TCONS_00050624-exon-scaffold_18-1575043694:266566..266815Clytia hemisphaericaexon
TCONS_00050624-exon-scaffold_18-1575043694:266001..266145TCONS_00050624-exon-scaffold_18-1575043694:266001..266145Clytia hemisphaericaexon
TCONS_00050624-exon-scaffold_18-1575043694:264595..264948TCONS_00050624-exon-scaffold_18-1575043694:264595..264948Clytia hemisphaericaexon
TCONS_00050624-exon-scaffold_18-1575043694:264010..264037TCONS_00050624-exon-scaffold_18-1575043694:264010..264037Clytia hemisphaericaexon
TCONS_00050624-exon-scaffold_18-1510915933:266566..266815TCONS_00050624-exon-scaffold_18-1510915933:266566..266815Clytia hemisphaericaexon
TCONS_00050624-exon-scaffold_18-1510915933:266001..266145TCONS_00050624-exon-scaffold_18-1510915933:266001..266145Clytia hemisphaericaexon
TCONS_00050624-exon-scaffold_18-1510915933:264595..264948TCONS_00050624-exon-scaffold_18-1510915933:264595..264948Clytia hemisphaericaexon
TCONS_00050624-exon-scaffold_18-1510915933:264010..264037TCONS_00050624-exon-scaffold_18-1510915933:264010..264037Clytia hemisphaericaexon
TCONS_00050624-exon-scaffold_18-1491911889:266566..266815TCONS_00050624-exon-scaffold_18-1491911889:266566..266815Clytia hemisphaericaexon
TCONS_00050624-exon-scaffold_18-1491911889:266001..266145TCONS_00050624-exon-scaffold_18-1491911889:266001..266145Clytia hemisphaericaexon
TCONS_00050624-exon-scaffold_18-1491911889:264595..264948TCONS_00050624-exon-scaffold_18-1491911889:264595..264948Clytia hemisphaericaexon
TCONS_00050624-exon-scaffold_18-1491911889:264010..264037TCONS_00050624-exon-scaffold_18-1491911889:264010..264037Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050624-proteinTCONS_00050624-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:264010..266815 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.163923	0.170318	0	0.116665	0	0	0.0232305	0	0.0651964	0	0	0	0	0	0.0380619	0.139161	0.240607	0	0	2.03566	0.816297	0.298866	0.12614	0.790075	0.478994	0.043927	0.330127	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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