TCONS_00050626 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050626
Unique NameTCONS_00050626
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1028

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050626 ID=TCONS_00050626|Name=TCONS_00050626|organism=Clytia hemisphaerica|type=transcript|length=1028bp
CTTAGATGGCGTCATTACGATCAAAATTGAGTGGATCAACCATCCGAACT
TGCGGCAATGTCATCCGAAGAAGTTTGTCAACACAAAGTTCGCAGAAATC
TTTCGTTGTTCCCGCCATCGCTAGCTCCATCGCTGTCATCACAGCAGGGG
GTACGGCTGCTTATGCTTACAACcaaatgaaaaacaacaactGTGGTATC
CTTCCTGTCCTTGAGGCTTCTGCTCCAACCACAAAAGCAGCAGTGAGAGA
ACGAACCTTCATTATGATCAAGCCTGATGGTGTAAAACGAGGTCTTGTTG
CCGATATCATCAAACGATTTGAACAGCGCGGATACAAATTGGTTGCTATG
AAAATGATGATGGCTGATATGCCTTTGCTGAGTGAACATTATGGTGATTT
GAAAAGCAAACCATTCTTCCCTGGACTCGTCAAGTTCATCAGTTCAGGAC
CCGTTGTTGCCATGGTGTGGGAAGGCAAATCCGTAGTTAAGCAAGGACGT
CAAATGTTGGGTGAGACAAATCCTTTAGCTTCAAAACCAGGGTCTATCCG
TGGTGATTTTTCCATTGATCTTGGCAGAAATGTCATCCACGGAAGTGATT
CAGTTGAATCAGCCAATACTGAAATCTCCTTATGGTTCAAAGAATCTGAA
TTGATGAATTATACTCTTCCGTTGGAAAGCATGGTGTTCGAGTGAATCAA
CTTGTTTACCTCTTCTACCCCACCGAGACATTGAATGAAGGATTTACATC
TGTTTGTTCAAGAGCAAGCTATCTTCCTGTCACATTTCTGGCAATTTTTT
AAtaacaaattttttattttatattcaattacttttttattttgtacggT
AGAACAATTACAAATTTATGAGGGATTTTGGGCTTAATTGATGagaaata
aataattaaaaccGATTCCGTTCGTGATTTTTTTCGAGACTATTTTTACC
GAGGTTCGTTACTgtcttcaaaaatttcttttaaaaatattatggCGGTG
TAAAGatgaagaattttattttgatATT
Run BLAST on NCBI

transcript from alignment at scaffold_18:272810..275855-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050626 ID=TCONS_00050626|Name=TCONS_00050626|organism=Clytia hemisphaerica|type=transcript|length=3046bp|location=Sequence derived from alignment at scaffold_18:272810..275855- (Clytia hemisphaerica)
CTTAGATGGCGTCATTACGATCAAAATTGAGTGGATCAACCATCCGAACT
TGCGGCAATGTCATCCGAAGAAGTTTGTCAACACAAAGTTCGCAGAAATC
TTTCGTTGTTCCCGCCATCGCTAGCTCCATCGCTGTCATCACAGCAGGGG
GTACGGCTGCTTATGCTTACAACCAAATGAAAAACAACAACTGTGGTATC
CTTCCTGTCCTTGAGGCTTCTGCTGTAAGTATCCTGTCTGTTTTTTTTAA
TACACTTTTTCGACCGTAGCCGCCAGGTTCCGGGCGGGCATTTTTTCGTC
CGCTTTATTCCACTGAAACCGTCACAGTCCTTTTTTCGCACCTATAGACA
GTAGAAAAATGTGTCAAAAAGGATTGGATCGAGTTTAGGGGGATAGTTAA
ATAATTAAGTGGCACGCGCCTGGCTGCGCGGAAACGGTCGAAAAGGTGTA
TTTTCTTTGGGATTTGTTATTGTTTCTGTTGTTCCTTTACCAATAGCTTG
TAAATCTGTCTCTGAAACGCAGTGTCATTTTCCCATTTGAGTATGATTAA
GAACCCTCAACTTTGCTCCTGATCGAAATAAAGAAATCCCTATCAAACAA
CAAATTAATATTTCTTTGTTTTTGAATAATGATTTTTGGTATATTTTATA
TTCTAATTTCAATGCTCTTCCTTTTGCAAATAGCCAACCACAAAAGCAGC
AGTGAGAGAACGAACCTTCATTATGATCAAGCCTGATGGTGTAAAACGAG
GTCTTGTTGCCGATATCATCAAACGATTTGAACAGCGCGGATACAAATTG
GTTGCTATGAAAATGATGATGGTAACTAATACTATTCTCATTTTTGTGAT
GTTACTGTTCCTAGCAAGTCTCTCCCAATTTTACCTATTAGGTGCTAAGA
GATCTATTCAAGATAATATATTGTTATAATTCGTCCTATATTTTGCATTT
CTTTGAGTTTTTTACAAGATACTTCACTAATTGGTCATTTAAAGTGATAG
AGATGACGCGTTCTTTAGAAAAAGTAATAAGATTCTTTTATTACATCTTA
ACGACCAACCAAATCAAATAAGAGCTTGTAAAAACTCCAACTTGTCCCGA
AGAGTGAGGAACCCTGAAAGTGCTCTTTTTTGACAGTCCCCGCCGTTAGC
TCGATTGGGAAAAGCTTTCCGAATTCCGTCTTCTGATCTTAAACGAAGCA
TGAATTATTTGGTTATACACAACCTTATCGGGGAGATCATCCCATCTGTG
AACCATTCGTATGCCCCTTCGGGAAGCTTTTCTCGATTCGAAAGGATCTT
TCCATTTGGGCTAGAGTGGCTGGGACTGAATATGATATGAATATGACATC
ACAAATGCAATGAAAAGGATTTATGAAAACCTGAACATTCAATTCTCGTG
GAACCGTATTTTGTTTCTACATAATTTTCTTTCTTTTCTACTTTACAGGC
TGATATGCCTTTGCTGAGTGAACATTATGGTGATTTGAAAAGCAAACCAT
TCTTCCCTGGACTCGTCAAGTTCATCAGTTCAGGACCCGTTGTTGCCATG
GTAAGGATTTTGGTTTAGAACTTATTATTGCACGTTTGTGAAAAACAAAC
TACAGCAGAACCTGAGGACAGGAGGCTTCGATGACCCAAATATTAAGAGC
AGCTCATATCGAAAACCGTGTACAAAGACCAAATTTAGTATACAGAAATT
CTACCCTACACTCGGGTACCTAATAGCCGGGGGAGGCTAATTAATTTTCA
AAAGATTTCCACTCAGGACATTCTTATTCCAACCCCCCCCCCCCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTTTTTTCCCCCCCCCCCCCCCCCCGCTTATAGA
TTTTTAGGAAATTTTTTTTGAAAGTTCCCTCTTTTGCCCTAATTCTGCTG
TATTAGCCTCCTTTTCGAAAATTTTCCACCCAGAACATTTTTATTCCAAC
CCCCCCCGCTTATTCAAAACCACCCGGCTATTAAGTACCCGAGAAAAGCT
GAATATTTCTGTTTCTTTAAAATAGATGATATATAGCTAATACGTGAAAG
ACAAGAAATTCGAATTCCATGAAACGTCAACTTGATTCTCAAGCTGAATC
CGTTCGTTATTGTTTGATGTCTGCCGGTCAATTGTCTGAGTCGGAAAATA
AAGAAGAAATTTTACAGATGAATATTTTAGAAATATATTTTTTTACTGTT
ACGTCACCTTAAAATTTAGCTATGTTCTATTTTTGTTTAGGTGTGGGAAG
GCAAATCCGTAGTTAAGCAAGGACGTCAAATGTTGGGTGAGACAAATCCT
TTAGCTTCAAAACCAGGGTCTATCCGTGGTGATTTTTCCATTGATCTTGG
CAGAAATGTCATCCACGGAAGTGATTCAGTTGAATCAGCCAATACTGAAA
TCTCCTTATGGTTCAAAGAATCTGAATTGATGAATTATACTCTTCCGTTG
GAAAGCATGGTGTTCGAGTGAATCAACTTGTTTACCTCTTCTACCCCACC
GAGACATTGAATGAAGGATTTACATCTGTTTGTTCAAGAGCAAGCTATCT
TCCTGTCACATTTCTGGCAATTTTTTAATAACAAATTTTTTATTTTATAT
TCAATTACTTTTTTATTTTGTACGGTAGAACAATTACAAATTTATGAGGG
ATTTTGGGCTTAATTGATGAGAAATAAATAATTAAAACCGATTCCGTTCG
TGATTTTTTTCGAGACTATTTTTACCGAGGTTCGTTACTGTCTTCAAAAA
TTTCTTTTAAAAATATTATGGCGGTGTAAAGATGAAGAATTTTATTTTGG
TAAGATGAATTTTACATATTTTGTCTTCAGTCTACAAACTCTTATTTCAG
ATTAATTTATTTTCTCATTTGAACTAGTTTTCATTTGTTTTGTATCTAGA
GAAAGTTTTCACTCGTTAATTCTGATGCTTTTGTTGCTTGTCTCGGGAAC
TTTATACCTATTACCTCAGTCGTTGGATTTTCTTTTTATAGATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032068XLOC_032068Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050626-exon-scaffold_18-1575043694:275632..275855TCONS_00050626-exon-scaffold_18-1575043694:275632..275855Clytia hemisphaericaexon
TCONS_00050626-exon-scaffold_18-1575043694:275035..275172TCONS_00050626-exon-scaffold_18-1575043694:275035..275172Clytia hemisphaericaexon
TCONS_00050626-exon-scaffold_18-1575043694:274306..274407TCONS_00050626-exon-scaffold_18-1575043694:274306..274407Clytia hemisphaericaexon
TCONS_00050626-exon-scaffold_18-1575043694:273007..273565TCONS_00050626-exon-scaffold_18-1575043694:273007..273565Clytia hemisphaericaexon
TCONS_00050626-exon-scaffold_18-1575043694:272810..272814TCONS_00050626-exon-scaffold_18-1575043694:272810..272814Clytia hemisphaericaexon
TCONS_00050626-exon-scaffold_18-1510915933:275632..275855TCONS_00050626-exon-scaffold_18-1510915933:275632..275855Clytia hemisphaericaexon
TCONS_00050626-exon-scaffold_18-1510915933:275035..275172TCONS_00050626-exon-scaffold_18-1510915933:275035..275172Clytia hemisphaericaexon
TCONS_00050626-exon-scaffold_18-1510915933:274306..274407TCONS_00050626-exon-scaffold_18-1510915933:274306..274407Clytia hemisphaericaexon
TCONS_00050626-exon-scaffold_18-1510915933:273007..273565TCONS_00050626-exon-scaffold_18-1510915933:273007..273565Clytia hemisphaericaexon
TCONS_00050626-exon-scaffold_18-1510915933:272810..272814TCONS_00050626-exon-scaffold_18-1510915933:272810..272814Clytia hemisphaericaexon
TCONS_00050626-exon-scaffold_18-1491911889:275632..275855TCONS_00050626-exon-scaffold_18-1491911889:275632..275855Clytia hemisphaericaexon
TCONS_00050626-exon-scaffold_18-1491911889:275035..275172TCONS_00050626-exon-scaffold_18-1491911889:275035..275172Clytia hemisphaericaexon
TCONS_00050626-exon-scaffold_18-1491911889:274306..274407TCONS_00050626-exon-scaffold_18-1491911889:274306..274407Clytia hemisphaericaexon
TCONS_00050626-exon-scaffold_18-1491911889:273007..273565TCONS_00050626-exon-scaffold_18-1491911889:273007..273565Clytia hemisphaericaexon
TCONS_00050626-exon-scaffold_18-1491911889:272810..272814TCONS_00050626-exon-scaffold_18-1491911889:272810..272814Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:272810..275855 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
517.971	539.714	442.129	378.713	17.3124	1.08676e-09	38.0311	0.0957532	254.268	278.458	217.933	287.141	201.059	202.601	225.321	249.361	152.923	153.997	18.8588	32.6604	123.91	128.082	277.433	237.691	0.950952	16.8966	115.853	87.9095	195.498	192.448
Blast
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BLAST of TCONS_00050626 vs. Swiss-Prot (Human)
Match: NDKA (Nucleoside diphosphate kinase A OS=Homo sapiens GN=NME1 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.568e-68
Identity = 99/148 (66.89%), Postives = 118/148 (79.73%), Query Frame = 3 
Query:  249 ERTFIMIKPDGVKRGLVADIIKRFEQRGYKLVAMKMMMADMPLLSEHYGDLKSKPFFPGLVKFISSGPVVAMVWEGKSVVKQGRQMLGETNPLASKPGSIRGDFSIDLGRNVIHGSDSVESANTEISLWFKESELMNYTLPLESMVFE 692
            ERTFI IKPDGV+RGLV +IIKRFEQ+G++LV +K M A   LL EHY DLK +PFF GLVK++ SGPVVAMVWEG +VVK GR MLGETNP  SKPG+IRGDF I +GRN+IHGSDSVESA  EI LWF   EL++YT   ++ ++E
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
The following BLAST results are available for this feature:
BLAST of TCONS_00050626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDKA3.568e-6866.89Nucleoside diphosphate kinase A OS=Homo sapiens GN... [more]
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