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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050627 ID=TCONS_00050627|Name=TCONS_00050627|organism=Clytia hemisphaerica|type=transcript|length=1194bp CTGGATCTTGAGATATTtggatttgaaattttgctgattcagcagaAAAA GGCCGAGAACGCTCAAAGTCAAAGGGGTCGATCCCATCATTTAATTTCAG AACTTATCATTTTGAATTGAACATTTGGTCTTAACTTATCTATCTTGCTT TAATCGTACACATCTTCTTAGATGGCGTCATTACGATCAAAATTGAGTGG ATCAACCATCCGAACTTGCGGCAATGTCATCCGAAGAAGTTTGTCAACAC AAAGTTCGCAGAAATCTTTCGTTGTTCCCGCCATCGCTAGCTCCATCGCT GTCATCACAGCAGGGGGTACGGCTGCTTATGCTTACAACcaaatgaaaaa caacaactGTGGTATCCTTCCTGTCCTTGAGGCTTCTGCTCCAACCACAA AAGCAGCAGTGAGAGAACGAACCTTCATTATGATCAAGCCTGATGGTGTA AAACGAGGTCTTGTTGCCGATATCATCAAACGATTTGAACAGCGCGGATA CAAATTGGTTGCTATGAAAATGATGATGGCTGATATGCCTTTGCTGAGTG AACATTATGGTGATTTGAAAAGCAAACCATTCTTCCCTGGACTCGTCAAG TTCATCAGTTCAGGACCCGTTGTTGCCATGGTGTGGGAAGGCAAATCCGT AGTTAAGCAAGGACGTCAAATGTTGGGTGAGACAAATCCTTTAGCTTCAA AACCAGGGTCTATCCGTGGTGATTTTTCCATTGATCTTGGCAGAAATGTC ATCCACGGAAGTGATTCAGTTGAATCAGCCAATACTGAAATCTCCTTATG GTTCAAAGAATCTGAATTGATGAATTATACTCTTCCGTTGGAAAGCATGG TGTTCGAGTGAATCAACTTGTTTACCTCTTCTACCCCACCGAGACATTGA ATGAAGGATTTACATCTGTTTGTTCAAGAGCAAGCTATCTTCCTGTCACA TTTCTGGCAATTTTTTAAtaacaaattttttattttatattcaattactt ttttattttgtacggTAGAACAATTACAAATTTATGAGGGATTTTGGGCT TAATTGATGagaaataaataattaaaaccGATTCCGTTCGTGATTTTTTT CGAGACTATTTTTACCGAGGTTCGTTACTgtcttcaaaaatttcttttaa aaatattatggCGGTGTAAAGatgaagaattttattttgatATT Run BLAST on NCBI protein sequence of TCONS_00050627-protein >TCONS_00050627-protein ID=TCONS_00050627-protein|Name=TCONS_00050627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
MASLRSKLSGSTIRTCGNVIRRSLSTQSSQKSFVVPAIASSIAVITAGGT AAYAYNQMKNNNCGILPVLEASAPTTKAAVRERTFIMIKPDGVKRGLVAD IIKRFEQRGYKLVAMKMMMADMPLLSEHYGDLKSKPFFPGLVKFISSGPV VAMVWEGKSVVKQGRQMLGETNPLASKPGSIRGDFSIDLGRNVIHGSDSV ESANTEISLWFKESELMNYTLPLESMVFE Run BLAST on NCBI transcript from alignment at scaffold_18:272810..276941- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050627 ID=TCONS_00050627|Name=TCONS_00050627|organism=Clytia hemisphaerica|type=transcript|length=4132bp|location=Sequence derived from alignment at scaffold_18:272810..276941- (Clytia hemisphaerica) CTGGATCTTGAGATATTTGGATTTGAAATTTTGCTGATTCAGCAGAAAAA
GGCCGAGAACGCTCAAAGTCAAAGGGGTCGATCCCATCATTTAATTTCAG
AACTTATCATTTTGAATTGAACATTTGGTCTTAACTTATCTATCTTGCTT
TAATCGTACACATCTTCTTAGATGGCGTCATTACGATCAAAATTGAGTGG
ATCAACCATCCGAACTTGCGGCAATGTCATCCGAAGAAGTTTGTCAACAC
AAAGTTCGCAGAAATCTTTCGTTGTTCCCGCCATCGCTAGCTCCATCGCT
GTCATCACAGCAGGGGGTACGGCTGCTTATGCTTACAACCAAATGAAAAA
CAACAACTGTGGTATCCTTCCTGTCCTTGAGGCTTCTGCTGTAAGTATCC
TGTCTGTTTTTTTTAATACACTTTTTCGACCGTAGCCGCCAGGTTCCGGG
CGGGCATTTTTTCGTCCGCTTTATTNTTAGTAAAAGATTACCTTGCATTA
AGTAAATCGCGGTGAAGAATTACATTTCAGATCTTCTTTATAGCCATTGT
GGGTGACTTTGAAAGAATTTGAAAAGTTTTGAAAGTTTTTAAGAAATAAC
CAATGTAACAAAAGGTTTTGAGCTAGGGATGAGCATTTGAATGAGAATTC
TTCAAAATGAAAAAGTTAAAAAGGAATTGGAAGAATGATTTTAACCCGTC
CAGCTTTTCCAATTTCTTTTATAGAAAATCGTATTTCAACAAACTTTTTT
CAAAATGTTGTTTAAACACACGAATACACTAATATTAATATAAAGATTCA
GAAAAATTTGACATAAATTTGATATAAATTTGATATAAAGATAAAACAAT
ACATTACCAGATAAGGGTTTTTAATAATGACTTTGATCAATTTCAGTTAT
AGTTTATAGGGTTTTCATGACTGGATCTTGAGATATTTGGATTTGAAATT
TTGCTGATTCAGCAGAAAAAGGCCGAGAACGCTCAAAGTCAAAGGGGTCG
ATCCCATCATTTAATTTCAGAACTTATCATTTTGAATTGAACATTTGGTC
TTAACTTATCTATCTTGCTTTAATCGTACACATCTTCTTAGATGGCGTCA
TTACGATCAAAATTGAGTGGATCAACCATCCGAACTTGCGGCAATGTCAT
CCGAAGAAGTTTGTCAACACAAAGTTCGCAGAAATCTTTCGTTGTTCCCG
CCATCGCTAGCTCCATCGCTGTCATCACAGCAGGGGGTACGGCTGCTTAT
GCTTACAACCAAATGAAAAACAACAACTGTGGTATCCTTCCTGTCCTTGA
GGCTTCTGCTGTAAGTATCCTGTCTGTTTTTTTTAATACACTTTTTCGAC
CGTAGCCGCCAGGTTCCGGGCGGGCATTTTTTCGTCCGCTTTATTCCACT
GAAACCGTCACAGTCCTTTTTTCGCACCTATAGACAGTAGAAAAATGTGT
CAAAAAGGATTGGATCGAGTTTAGGGGGATAGTTAAATAATTAAGTGGCA
CGCGCCTGGCTGCGCGGAAACGGTCGAAAAGGTGTATTTTCTTTGGGATT
TGTTATTGTTTCTGTTGTTCCTTTACCAATAGCTTGTAAATCTGTCTCTG
AAACGCAGTGTCATTTTCCCATTTGAGTATGATTAAGAACCCTCAACTTT
GCTCCTGATCGAAATAAAGAAATCCCTATCAAACAACAAATTAATATTTC
TTTGTTTTTGAATAATGATTTTTGGTATATTTTATATTCTAATTTCAATG
CTCTTCCTTTTGCAAATAGCCAACCACAAAAGCAGCAGTGAGAGAACGAA
CCTTCATTATGATCAAGCCTGATGGTGTAAAACGAGGTCTTGTTGCCGAT
ATCATCAAACGATTTGAACAGCGCGGATACAAATTGGTTGCTATGAAAAT
GATGATGGTAACTAATACTATTCTCATTTTTGTGATGTTACTGTTCCTAG
CAAGTCTCTCCCAATTTTACCTATTAGGTGCTAAGAGATCTATTCAAGAT
AATATATTGTTATAATTCGTCCTATATTTTGCATTTCTTTGAGTTTTTTA
CAAGATACTTCACTAATTGGTCATTTAAAGTGATAGAGATGACGCGTTCT
TTAGAAAAAGTAATAAGATTCTTTTATTACATCTTAACGACCAACCAAAT
CAAATAAGAGCTTGTAAAAACTCCAACTTGTCCCGAAGAGTGAGGAACCC
TGAAAGTGCTCTTTTTTGACAGTCCCCGCCGTTAGCTCGATTGGGAAAAG
CTTTCCGAATTCCGTCTTCTGATCTTAAACGAAGCATGAATTATTTGGTT
ATACACAACCTTATCGGGGAGATCATCCCATCTGTGAACCATTCGTATGC
CCCTTCGGGAAGCTTTTCTCGATTCGAAAGGATCTTTCCATTTGGGCTAG
AGTGGCTGGGACTGAATATGATATGAATATGACATCACAAATGCAATGAA
AAGGATTTATGAAAACCTGAACATTCAATTCTCGTGGAACCGTATTTTGT
TTCTACATAATTTTCTTTCTTTTCTACTTTACAGGCTGATATGCCTTTGC
TGAGTGAACATTATGGTGATTTGAAAAGCAAACCATTCTTCCCTGGACTC
GTCAAGTTCATCAGTTCAGGACCCGTTGTTGCCATGGTAAGGATTTTGGT
TTAGAACTTATTATTGCACGTTTGTGAAAAACAAACTACAGCAGAACCTG
AGGACAGGAGGCTTCGATGACCCAAATATTAAGAGCAGCTCATATCGAAA
ACCGTGTACAAAGACCAAATTTAGTATACAGAAATTCTACCCTACACTCG
GGTACCTAATAGCCGGGGGAGGCTAATTAATTTTCAAAAGATTTCCACTC
AGGACATTCTTATTCCAACCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTTTTTTTCCCCCCCCCCCCCCCCCCGCTTATAGATTTTTAGGAAATTT
TTTTTGAAAGTTCCCTCTTTTGCCCTAATTCTGCTGTATTAGCCTCCTTT
TCGAAAATTTTCCACCCAGAACATTTTTATTCCAACCCCCCCCGCTTATT
CAAAACCACCCGGCTATTAAGTACCCGAGAAAAGCTGAATATTTCTGTTT
CTTTAAAATAGATGATATATAGCTAATACGTGAAAGACAAGAAATTCGAA
TTCCATGAAACGTCAACTTGATTCTCAAGCTGAATCCGTTCGTTATTGTT
TGATGTCTGCCGGTCAATTGTCTGAGTCGGAAAATAAAGAAGAAATTTTA
CAGATGAATATTTTAGAAATATATTTTTTTACTGTTACGTCACCTTAAAA
TTTAGCTATGTTCTATTTTTGTTTAGGTGTGGGAAGGCAAATCCGTAGTT
AAGCAAGGACGTCAAATGTTGGGTGAGACAAATCCTTTAGCTTCAAAACC
AGGGTCTATCCGTGGTGATTTTTCCATTGATCTTGGCAGAAATGTCATCC
ACGGAAGTGATTCAGTTGAATCAGCCAATACTGAAATCTCCTTATGGTTC
AAAGAATCTGAATTGATGAATTATACTCTTCCGTTGGAAAGCATGGTGTT
CGAGTGAATCAACTTGTTTACCTCTTCTACCCCACCGAGACATTGAATGA
AGGATTTACATCTGTTTGTTCAAGAGCAAGCTATCTTCCTGTCACATTTC
TGGCAATTTTTTAATAACAAATTTTTTATTTTATATTCAATTACTTTTTT
ATTTTGTACGGTAGAACAATTACAAATTTATGAGGGATTTTGGGCTTAAT
TGATGAGAAATAAATAATTAAAACCGATTCCGTTCGTGATTTTTTTCGAG
ACTATTTTTACCGAGGTTCGTTACTGTCTTCAAAAATTTCTTTTAAAAAT
ATTATGGCGGTGTAAAGATGAAGAATTTTATTTTGGTAAGATGAATTTTA
CATATTTTGTCTTCAGTCTACAAACTCTTATTTCAGATTAATTTATTTTC
TCATTTGAACTAGTTTTCATTTGTTTTGTATCTAGAGAAAGTTTTCACTC
GTTAATTCTGATGCTTTTGTTGCTTGTCTCGGGAACTTTATACCTATTAC
CTCAGTCGTTGGATTTTCTTTTTATAGATATT Coding sequence (CDS) from alignment at scaffold_18:272810..276941- >TCONS_00050627 ID=TCONS_00050627|Name=TCONS_00050627|organism=Clytia hemisphaerica|type=CDS|length=2760bp|location=Sequence derived from alignment at scaffold_18:272810..276941- (Clytia hemisphaerica) GTGTGGGAAGGCAAATCCGTAGTTAAGCAAGGACGTCAAATGTTGGGTGA GACAAATCCTTTAGCTTCAAAACCAGGGTCTATCCGTGGTGATTTTTCCA TTGATCTTGGCAGAAATGTCATCCACGGAAGTGATTCAGTTGAATCAGCC AATACTGAAATCTCCTTATGGTTCAAAGAATCTGAATTGATGAATTATAC TCTTCCGTTGGAAAGCATGGTGTTCGAGTGAGCTGATATGCCTTTGCTGA GTGAACATTATGGTGATTTGAAAAGCAAACCATTCTTCCCTGGACTCGTC AAGTTCATCAGTTCAGGACCCGTTGTTGCCATGCCAACCACAAAAGCAGC AGTGAGAGAACGAACCTTCATTATGATCAAGCCTGATGGTGTAAAACGAG GTCTTGTTGCCGATATCATCAAACGATTTGAACAGCGCGGATACAAATTG GTTGCTATGAAAATGATGATGATGGCGTCATTACGATCAAAATTGAGTGG ATCAACCATCCGAACTTGCGGCAATGTCATCCGAAGAAGTTTGTCAACAC AAAGTTCGCAGAAATCTTTCGTTGTTCCCGCCATCGCTAGCTCCATCGCT GTCATCACAGCAGGGGGTACGGCTGCTTATGCTTACAACCAAATGAAAAA CAACAACTGTGGTATCCTTCCTGTCCTTGAGGCTTCTGCTGTGTGGGAAG GCAAATCCGTAGTTAAGCAAGGACGTCAAATGTTGGGTGAGACAAATCCT TTAGCTTCAAAACCAGGGTCTATCCGTGGTGATTTTTCCATTGATCTTGG CAGAAATGTCATCCACGGAAGTGATTCAGTTGAATCAGCCAATACTGAAA TCTCCTTATGGTTCAAAGAATCTGAATTGATGAATTATACTCTTCCGTTG GAAAGCATGGTGTTCGAGTGAGCTGATATGCCTTTGCTGAGTGAACATTA TGGTGATTTGAAAAGCAAACCATTCTTCCCTGGACTCGTCAAGTTCATCA GTTCAGGACCCGTTGTTGCCATGCCAACCACAAAAGCAGCAGTGAGAGAA CGAACCTTCATTATGATCAAGCCTGATGGTGTAAAACGAGGTCTTGTTGC CGATATCATCAAACGATTTGAACAGCGCGGATACAAATTGGTTGCTATGA AAATGATGATGATGGCGTCATTACGATCAAAATTGAGTGGATCAACCATC CGAACTTGCGGCAATGTCATCCGAAGAAGTTTGTCAACACAAAGTTCGCA GAAATCTTTCGTTGTTCCCGCCATCGCTAGCTCCATCGCTGTCATCACAG CAGGGGGTACGGCTGCTTATGCTTACAACCAAATGAAAAACAACAACTGT GGTATCCTTCCTGTCCTTGAGGCTTCTGCTGTGTGGGAAGGCAAATCCGT AGTTAAGCAAGGACGTCAAATGTTGGGTGAGACAAATCCTTTAGCTTCAA AACCAGGGTCTATCCGTGGTGATTTTTCCATTGATCTTGGCAGAAATGTC ATCCACGGAAGTGATTCAGTTGAATCAGCCAATACTGAAATCTCCTTATG GTTCAAAGAATCTGAATTGATGAATTATACTCTTCCGTTGGAAAGCATGG TGTTCGAGTGAGCTGATATGCCTTTGCTGAGTGAACATTATGGTGATTTG AAAAGCAAACCATTCTTCCCTGGACTCGTCAAGTTCATCAGTTCAGGACC CGTTGTTGCCATGCCAACCACAAAAGCAGCAGTGAGAGAACGAACCTTCA TTATGATCAAGCCTGATGGTGTAAAACGAGGTCTTGTTGCCGATATCATC AAACGATTTGAACAGCGCGGATACAAATTGGTTGCTATGAAAATGATGAT GATGGCGTCATTACGATCAAAATTGAGTGGATCAACCATCCGAACTTGCG GCAATGTCATCCGAAGAAGTTTGTCAACACAAAGTTCGCAGAAATCTTTC GTTGTTCCCGCCATCGCTAGCTCCATCGCTGTCATCACAGCAGGGGGTAC GGCTGCTTATGCTTACAACCAAATGAAAAACAACAACTGTGGTATCCTTC CTGTCCTTGAGGCTTCTGCTGTGTGGGAAGGCAAATCCGTAGTTAAGCAA GGACGTCAAATGTTGGGTGAGACAAATCCTTTAGCTTCAAAACCAGGGTC TATCCGTGGTGATTTTTCCATTGATCTTGGCAGAAATGTCATCCACGGAA GTGATTCAGTTGAATCAGCCAATACTGAAATCTCCTTATGGTTCAAAGAA TCTGAATTGATGAATTATACTCTTCCGTTGGAAAGCATGGTGTTCGAGTG AGCTGATATGCCTTTGCTGAGTGAACATTATGGTGATTTGAAAAGCAAAC CATTCTTCCCTGGACTCGTCAAGTTCATCAGTTCAGGACCCGTTGTTGCC ATGCCAACCACAAAAGCAGCAGTGAGAGAACGAACCTTCATTATGATCAA GCCTGATGGTGTAAAACGAGGTCTTGTTGCCGATATCATCAAACGATTTG AACAGCGCGGATACAAATTGGTTGCTATGAAAATGATGATGATGGCGTCA TTACGATCAAAATTGAGTGGATCAACCATCCGAACTTGCGGCAATGTCAT CCGAAGAAGTTTGTCAACACAAAGTTCGCAGAAATCTTTCGTTGTTCCCG CCATCGCTAGCTCCATCGCTGTCATCACAGCAGGGGGTACGGCTGCTTAT GCTTACAACCAAATGAAAAACAACAACTGTGGTATCCTTCCTGTCCTTGA GGCTTCTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00050627-exon-scaffold_18-1575043694:276552..276941 | TCONS_00050627-exon-scaffold_18-1575043694:276552..276941 | Clytia hemisphaerica | exon |
TCONS_00050627-exon-scaffold_18-1575043694:275035..275172 | TCONS_00050627-exon-scaffold_18-1575043694:275035..275172 | Clytia hemisphaerica | exon |
TCONS_00050627-exon-scaffold_18-1575043694:274306..274407 | TCONS_00050627-exon-scaffold_18-1575043694:274306..274407 | Clytia hemisphaerica | exon |
TCONS_00050627-exon-scaffold_18-1575043694:273007..273565 | TCONS_00050627-exon-scaffold_18-1575043694:273007..273565 | Clytia hemisphaerica | exon |
TCONS_00050627-exon-scaffold_18-1575043694:272810..272814 | TCONS_00050627-exon-scaffold_18-1575043694:272810..272814 | Clytia hemisphaerica | exon |
TCONS_00050627-exon-scaffold_18-1510915933:276552..276941 | TCONS_00050627-exon-scaffold_18-1510915933:276552..276941 | Clytia hemisphaerica | exon |
TCONS_00050627-exon-scaffold_18-1510915933:275035..275172 | TCONS_00050627-exon-scaffold_18-1510915933:275035..275172 | Clytia hemisphaerica | exon |
TCONS_00050627-exon-scaffold_18-1510915933:274306..274407 | TCONS_00050627-exon-scaffold_18-1510915933:274306..274407 | Clytia hemisphaerica | exon |
TCONS_00050627-exon-scaffold_18-1510915933:273007..273565 | TCONS_00050627-exon-scaffold_18-1510915933:273007..273565 | Clytia hemisphaerica | exon |
TCONS_00050627-exon-scaffold_18-1510915933:272810..272814 | TCONS_00050627-exon-scaffold_18-1510915933:272810..272814 | Clytia hemisphaerica | exon |
TCONS_00050627-exon-scaffold_18-1491911889:276552..276941 | TCONS_00050627-exon-scaffold_18-1491911889:276552..276941 | Clytia hemisphaerica | exon |
TCONS_00050627-exon-scaffold_18-1491911889:275035..275172 | TCONS_00050627-exon-scaffold_18-1491911889:275035..275172 | Clytia hemisphaerica | exon |
TCONS_00050627-exon-scaffold_18-1491911889:274306..274407 | TCONS_00050627-exon-scaffold_18-1491911889:274306..274407 | Clytia hemisphaerica | exon |
TCONS_00050627-exon-scaffold_18-1491911889:273007..273565 | TCONS_00050627-exon-scaffold_18-1491911889:273007..273565 | Clytia hemisphaerica | exon |
TCONS_00050627-exon-scaffold_18-1491911889:272810..272814 | TCONS_00050627-exon-scaffold_18-1491911889:272810..272814 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_18 | supercontig | scaffold_18:272810..276941 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0006228 | UTP biosynthetic process |
GO:0006241 | CTP biosynthetic process |
GO:0006165 | nucleoside diphosphate phosphorylation |
GO:0006183 | GTP biosynthetic process |
Vocabulary: Molecular Function
Term | Definition |
GO:0004550 | nucleoside diphosphate kinase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006241 |
CTP biosynthetic process |
biological_process |
GO:0006183 |
GTP biosynthetic process |
biological_process |
GO:0006165 |
nucleoside diphosphate phosphorylation |
biological_process |
GO:0006228 |
UTP biosynthetic process |
molecular_function |
GO:0004550 |
nucleoside diphosphate kinase activity |
Blast
BLAST of TCONS_00050627 vs. Swiss-Prot (Human)
Match: NDKA (Nucleoside diphosphate kinase A OS=Homo sapiens GN=NME1 PE=1 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 1.770e-67 Identity = 99/148 (66.89%), Postives = 118/148 (79.73%), Query Frame = 1
Query: 415 ERTFIMIKPDGVKRGLVADIIKRFEQRGYKLVAMKMMMADMPLLSEHYGDLKSKPFFPGLVKFISSGPVVAMVWEGKSVVKQGRQMLGETNPLASKPGSIRGDFSIDLGRNVIHGSDSVESANTEISLWFKESELMNYTLPLESMVFE 858
ERTFI IKPDGV+RGLV +IIKRFEQ+G++LV +K M A LL EHY DLK +PFF GLVK++ SGPVVAMVWEG +VVK GR MLGETNP SKPG+IRGDF I +GRN+IHGSDSVESA EI LWF EL++YT ++ ++E
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
The following BLAST results are available for this feature:
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