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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050628 ID=TCONS_00050628|Name=TCONS_00050628|organism=Clytia hemisphaerica|type=transcript|length=1389bp
ATTAAGAATCCTTCATTTCAAGAATGGCTGCCTTTGCCTTTGAAAATTTA
GAAGTCATTTGCAAGCAAATCAATCTTGCTAAAGAAAAGTGTTTTTGCTA
TAACATTAACTTTTACGAACACGGACAGAAAATCGATTTTTGTGCTTTCT
TAAACACAACTTCTGAGATCGAACGCAGAAAGAGAATACCGCACATATAT
GGGGACAAtattcaaaacgaggctaaaaccaaAGACATAGTTTTCGCAGC
CATTATAGTTTTGGTTTCGATCGTTGGTATCCTTGGTAACtctattgttt
tgatgtttcctcaaagaaagaaaaagtcaacTCATCTGAAATTAACGTAT
TCGCTGGCATCAACAGACTTAATCTCATCAGTAACTTTCATAGTCCTTTT
AACGCCCACCTTTTGGACCAAAGAATGGGTTTATGGAGAAGTTGGATGTA
AAACCCTTCTACCTTTAATGTTGAATCAATCAAGCTTTGCAATAGGTATC
ATTTTGATCATAGCCATCGAGAGATTCTTCGGAATTGTTAAACCCTTCAA
AATTGGCATATCAACAAATTTCAGATGTATGATGTGTTTGGCGATCAATT
TTGTTCTTGCTTTCTGTTCTGCTATTCCCTACATCAAACATTTACACGTC
AACCCCGAAACAGAAAAATGCACTGAAATGTGGAAACATGAAGGCTATGC
CATCATTTATTCAGGTTTCATTCTGGTCTTCTTTTTTATCGTCCCTATCA
TCACAATCGGTGTTCTGTACTGGAAGATAATTGTCACATTGAAAAATCAA
GCGCTCACTTTCAAATTTCTTAACGGTTCTTACGTCAGTGAGAACTACGC
AAAGCGTATTGAGTACAATAAAAGAACTATCAAAAACTTATTTGGAGTGG
TGTTACTGTTTGTGTTGTTCAATTTACCTAACAAGGTCAAATGGATCATA
TTTGACACCAGCAGCGGTGGCATGCACGGTACAGAGAATGCACTGACAAG
TTGGTCCAAATTTGTATCTAATTTGTTGGCGTTTTTTTGCGTGCTGATCA
ACCCGTTGGTGTATACTTTCAGTGACAAACGATTTCGAAGTGATGTATGG
GTCTTTTTCATAACAAAATTAATTTGTAGGCGAAGAAAACAAAGACAAGT
TGAAATGGAAATGGGTGTCAGGAGGGTGATCAACACAGGCCTCACTGAAG
TTGCGTCAAAACAACCTAACTAGAACCTCTCCTCTTGTACACGGGTATTA
CTATTGTTTTATTACCGAGTGTGACAGTCATGGTGGAAAATACCCCCTCC
CGTTGATAATAGGAACACCAAAAATGCTTGATAATAATACACCGAAAAAC
TCTCAGTTCTTGTCCAAAAGTTTTCGGACAGGTACACAC Run BLAST on NCBI protein sequence of TCONS_00050628-protein >TCONS_00050628-protein ID=TCONS_00050628-protein|Name=TCONS_00050628-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MAAFAFENLEVICKQINLAKEKCFCYNINFYEHGQKIDFCAFLNTTSEIE
RRKRIPHIYGDNIQNEAKTKDIVFAAIIVLVSIVGILGNSIVLMFPQRKK
KSTHLKLTYSLASTDLISSVTFIVLLTPTFWTKEWVYGEVGCKTLLPLML
NQSSFAIGIILIIAIERFFGIVKPFKIGISTNFRCMMCLAINFVLAFCSA
IPYIKHLHVNPETEKCTEMWKHEGYAIIYSGFILVFFFIVPIITIGVLYW
KIIVTLKNQALTFKFLNGSYVSENYAKRIEYNKRTIKNLFGVVLLFVLFN
LPNKVKWIIFDTSSGGMHGTENALTSWSKFVSNLLAFFCVLINPLVYTFS
DKRFRSDVWVFFITKLICRRRKQRQVEMEMGVRRVINTGLTEVASKQPN Run BLAST on NCBI transcript from alignment at scaffold_18:22424..23812 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050628 ID=TCONS_00050628|Name=TCONS_00050628|organism=Clytia hemisphaerica|type=transcript|length=1389bp|location=Sequence derived from alignment at scaffold_18:22424..23812 (Clytia hemisphaerica)
GTGTGTACCTGTCCGAAAACTTTTGGACAAGAACTGAGAGTTTTTCGGTG
TATTATTATCAAGCATTTTTGGTGTTCCTATTATCAACGGGAGGGGGTAT
TTTCCACCATGACTGTCACACTCGGTAATAAAACAATAGTAATACCCGTG
TACAAGAGGAGAGGTTCTAGTTAGGTTGTTTTGACGCAACTTCAGTGAGG
CCTGTGTTGATCACCCTCCTGACACCCATTTCCATTTCAACTTGTCTTTG
TTTTCTTCGCCTACAAATTAATTTTGTTATGAAAAAGACCCATACATCAC
TTCGAAATCGTTTGTCACTGAAAGTATACACCAACGGGTTGATCAGCACG
CAAAAAAACGCCAACAAATTAGATACAAATTTGGACCAACTTGTCAGTGC
ATTCTCTGTACCGTGCATGCCACCGCTGCTGGTGTCAAATATGATCCATT
TGACCTTGTTAGGTAAATTGAACAACACAAACAGTAACACCACTCCAAAT
AAGTTTTTGATAGTTCTTTTATTGTACTCAATACGCTTTGCGTAGTTCTC
ACTGACGTAAGAACCGTTAAGAAATTTGAAAGTGAGCGCTTGATTTTTCA
ATGTGACAATTATCTTCCAGTACAGAACACCGATTGTGATGATAGGGACG
ATAAAAAAGAAGACCAGAATGAAACCTGAATAAATGATGGCATAGCCTTC
ATGTTTCCACATTTCAGTGCATTTTTCTGTTTCGGGGTTGACGTGTAAAT
GTTTGATGTAGGGAATAGCAGAACAGAAAGCAAGAACAAAATTGATCGCC
AAACACATCATACATCTGAAATTTGTTGATATGCCAATTTTGAAGGGTTT
AACAATTCCGAAGAATCTCTCGATGGCTATGATCAAAATGATACCTATTG
CAAAGCTTGATTGATTCAACATTAAAGGTAGAAGGGTTTTACATCCAACT
TCTCCATAAACCCATTCTTTGGTCCAAAAGGTGGGCGTTAAAAGGACTAT
GAAAGTTACTGATGAGATTAAGTCTGTTGATGCCAGCGAATACGTTAATT
TCAGATGAgttgactttttctttctttgaggaaacatcaaaacaatagaG
TTACCAAGGATACCAACGATCGAAACCAAAACTATAATGGCTGCGAAAAC
TATGTCTttggttttagcctcgttttgaataTTGTCCCCATATATGTGCG
GTATTCTCTTTCTGCGTTCGATCTCAGAAGTTGTGTTTAAGAAAGCACAA
AAATCGATTTTCTGTCCGTGTTCGTAAAAGTTAATGTTATAGCAAAAACA
CTTTTCTTTAGCAAGATTGATTTGCTTGCAAATGACTTCTAAATTTTCAA
AGGCAAAGGCAGCCATTCTTGAAATGAAGGATTCTTAAT Coding sequence (CDS) from alignment at scaffold_18:22424..23812 >TCONS_00050628 ID=TCONS_00050628|Name=TCONS_00050628|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_18:22424..23812 (Clytia hemisphaerica)
CTAGTTAGGTTGTTTTGACGCAACTTCAGTGAGGCCTGTGTTGATCACCC
TCCTGACACCCATTTCCATTTCAACTTGTCTTTGTTTTCTTCGCCTACAA
ATTAATTTTGTTATGAAAAAGACCCATACATCACTTCGAAATCGTTTGTC
ACTGAAAGTATACACCAACGGGTTGATCAGCACGCAAAAAAACGCCAACA
AATTAGATACAAATTTGGACCAACTTGTCAGTGCATTCTCTGTACCGTGC
ATGCCACCGCTGCTGGTGTCAAATATGATCCATTTGACCTTGTTAGGTAA
ATTGAACAACACAAACAGTAACACCACTCCAAATAAGTTTTTGATAGTTC
TTTTATTGTACTCAATACGCTTTGCGTAGTTCTCACTGACGTAAGAACCG
TTAAGAAATTTGAAAGTGAGCGCTTGATTTTTCAATGTGACAATTATCTT
CCAGTACAGAACACCGATTGTGATGATAGGGACGATAAAAAAGAAGACCA
GAATGAAACCTGAATAAATGATGGCATAGCCTTCATGTTTCCACATTTCA
GTGCATTTTTCTGTTTCGGGGTTGACGTGTAAATGTTTGATGTAGGGAAT
AGCAGAACAGAAAGCAAGAACAAAATTGATCGCCAAACACATCATACATC
TGAAATTTGTTGATATGCCAATTTTGAAGGGTTTAACAATTCCGAAGAAT
CTCTCGATGGCTATGATCAAAATGATACCTATTGCAAAGCTTGATTGATT
CAACATTAAAGGTAGAAGGGTTTTACATCCAACTTCTCCATAAACCCATT
CTTTGGTCCAAAAGGTGGGCGTTAAAAGGACTATGAAAGTTACTGATGAG
ATTAAGTCTGTTGATGCCAGCGAATACGTTAATTTCAGATGAgttgactt
tttctttctttgaggaaacatcaaaacaatagaGTTACCAAGGATACCAA
CGATCGAAACCAAAACTATAATGGCTGCGAAAACTATGTCTttggtttta
gcctcgttttgaataTTGTCCCCATATATGTGCGGTATTCTCTTTCTGCG
TTCGATCTCAGAAGTTGTGTTTAAGAAAGCACAAAAATCGATTTTCTGTC
CGTGTTCGTAAAAGTTAATGTTATAGCAAAAACACTTTTCTTTAGCAAGA
TTGATTTGCTTGCAAATGACTTCTAAATTTTCAAAGGCAAAGGCAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050628-exon-scaffold_18-1491911889:22424..23812 | TCONS_00050628-exon-scaffold_18-1491911889:22424..23812 | Clytia hemisphaerica | exon |
| TCONS_00050628-exon-scaffold_18-1510915933:22424..23812 | TCONS_00050628-exon-scaffold_18-1510915933:22424..23812 | Clytia hemisphaerica | exon |
| TCONS_00050628-exon-scaffold_18-1575043694:22424..23812 | TCONS_00050628-exon-scaffold_18-1575043694:22424..23812 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:22424..23812 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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