TCONS_00050629 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050629
Unique NameTCONS_00050629
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050629 ID=TCONS_00050629|Name=TCONS_00050629|organism=Clytia hemisphaerica|type=transcript|length=599bp
CCATCCACTCATTGTCAATGCTGGGGAGAGTGATAGCATCCTGAGCTTGG
TCGTTGAactttatgtttttattttgagaaaaagacaTTTTAAACGATGA
GAACATAATCACTGAACcataacaaaatcaaaaacataaatCCATAACAA
AATCAAAAGTCAAGGAAACGAAagacatcaaaatcaaaaaacagaTCACC
AAACATTTATGCAGAAATCATGGCATTTGAGgcgtaaaaaatatattttt
caactaaaGGCTTCGGGACACGAAAAGTGtttgtcccatggtttcttttt
ttgtttcatggtacacaaagtgagggaaatacccaaaagacacgctgatt
ttgtccctggaaCAATGGAACAAAAttgattcaaataaaaaacttctggt
gtccccaagccttaaaattCCTGTTATTCGGTAAATTTTATACTATCGTC
CATGAAACGACTTCAAAAAATTGAGCCCCCACAAATTCGAATTCGCTGCA
CGCTTGCTAGGGTAGGCctgtagatttagaacgccatggtgGAATTAAAT
AAACAGAAAAAGGACAACAAAACAAGAgactttttcagtttgaaaatTG
Run BLAST on NCBI

transcript from alignment at scaffold_18:26199..26797

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050629 ID=TCONS_00050629|Name=TCONS_00050629|organism=Clytia hemisphaerica|type=transcript|length=599bp|location=Sequence derived from alignment at scaffold_18:26199..26797 (Clytia hemisphaerica)
CAattttcaaactgaaaaagtcTCTTGTTTTGTTGTCCTTTTTCTGTTTA
TTTAATTCcaccatggcgttctaaatctacagGCCTACCCTAGCAAGCGT
GCAGCGAATTCGAATTTGTGGGGGCTCAATTTTTTGAAGTCGTTTCATGG
ACGATAGTATAAAATTTACCGAATAACAGGaattttaaggcttggggaca
ccagaagttttttatttgaatcaaTTTTGTTCCATTGttccagggacaaa
atcagcgtgtcttttgggtatttccctcactttgtgtaccatgaaacaaa
aaaagaaaccatgggacaaaCACTTTTCGTGTCCCGAAGCCtttagttga
aaaatatattttttacgcCTCAAATGCCATGATTTCTGCATAAATGTTTG
GTGAtctgttttttgattttgatgtctTTCGTTTCCTTGACTTTTGATTT
TGTTATGGatttatgtttttgattttgttatgGTTCAGTGATTATGTTCT
CATCGTTTAAAAtgtctttttctcaaaataaaaacataaagtTCAACGAC
CAAGCTCAGGATGCTATCACTCTCCCCAGCATTGACAATGAGTGGATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032070XLOC_032070Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050629-exon-scaffold_18-1491911889:26199..26797TCONS_00050629-exon-scaffold_18-1491911889:26199..26797Clytia hemisphaericaexon
TCONS_00050629-exon-scaffold_18-1510915933:26199..26797TCONS_00050629-exon-scaffold_18-1510915933:26199..26797Clytia hemisphaericaexon
TCONS_00050629-exon-scaffold_18-1575043694:26199..26797TCONS_00050629-exon-scaffold_18-1575043694:26199..26797Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:26199..26797 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.104533	0	0	0.247454	0.122676	0.292728	0.117526	0	0.242788	0.382901	0	0.128198	2.14581	0.568917	0.209211	0.222522	0.0687407	0.211462	0.440262	0.406647	0	0.129636	0	0.0953096	0.0979834	0.0874997	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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